DK943973
Clone id YMU02A01NGRL0004_I23
Library
Length 762
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_I23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
AACTCTCTGCCTTGTGCACTCGCTGATCATCTCTAGACCGGCAGTAGCAATGGCGAGCTC
TGTGGCTTCTTTGGCAGTTGCTGCTCCCTCGTGCGCCCCGGCAGAGAGCCTATCTAAGAG
CTTCTCCGGCCTCAGGCCCACTACCCTCGCTGCCCCCAAGAGCGCCAACCCGCTCTCCAT
CTCCAACGGCAGCCGCGTGAGCGCCATGCTTGTGTGGAAGCCGTATGACAACAAGAAGTT
CGAGATTCTGTCCTACTTGCCGCCTTTGACAAGCGAGCAGATTGCGAAGCAGGTGGACTT
CATGGTCCGGAAGGGCTGGACCCCCTGCATTGAGTTCGACAAAATCGGAAGCGTATACCG
AGAGCACTTCCACGGCAGCGGCTACTACGATGGGCGGTACTGGGTGATGTGGAAGCTGCC
CATGTTTGGCTGCCAAGATGCCGCTGCTGTGCTGCGTGAAATTGCAGAGTGCGCCAAGGA
GTATCCTGAAGCCTTCATCCGCGTGCTGGGCTTTGACGCTNAGAGGCAGGTGCAGGTCTC
CGGCTTCCTTGTCCAGAAGCCCTCTGTCTAAACTTTCTTAAAGCAAGCCAATTTAGTTGG
CATGAATGCCTGCTTCCCATTTCCCACTGGCGCCCAAACAAGCTTGGCTCTTATGAGCCT
TTTGTGTCCCCAGCCCCCTTTGCATACCATAAAGAAAACAACCTTCCCCGGGGGGGTGGC
TTGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q40250
Definition sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain, chloroplastic OS=Lactuca sativa
Align length 157
Score (bit) 181.0
E-value 4.0e-45
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943973|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_I23, 5'
(724 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chai... 181 4e-45
sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chai... 179 2e-44
sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small cha... 177 5e-44
sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small cha... 177 5e-44
sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chai... 177 7e-44
sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chai... 177 7e-44
sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small ch... 177 7e-44
sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chai... 176 9e-44
sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chai... 176 9e-44
sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chai... 176 1e-43
sp|P19308|RBS2_LEMGI Ribulose bisphosphate carboxylase small cha... 176 1e-43
sp|Q96542|RBS_BETVE Ribulose bisphosphate carboxylase small chai... 175 3e-43
sp|Q43832|RBS2_SPIOL Ribulose bisphosphate carboxylase small cha... 174 3e-43
sp|O64416|RBS_MARPA Ribulose bisphosphate carboxylase small chai... 174 4e-43
sp|P19310|RBS4_LEMGI Ribulose bisphosphate carboxylase small cha... 174 4e-43
sp|Q39746|RBS4_FLAPR Ribulose bisphosphate carboxylase small cha... 174 4e-43
sp|P10796|RBS1B_ARATH Ribulose bisphosphate carboxylase small ch... 174 4e-43
sp|P24007|RBS_PYRPY Ribulose bisphosphate carboxylase small chai... 173 7e-43
sp|P05348|RBS_MAIZE Ribulose bisphosphate carboxylase small chai... 173 7e-43
sp|P00871|RBS1_WHEAT Ribulose bisphosphate carboxylase small cha... 173 7e-43
sp|P10798|RBS3B_ARATH Ribulose bisphosphate carboxylase small ch... 173 1e-42
sp|Q39744|RBS2_FLAPR Ribulose bisphosphate carboxylase small cha... 173 1e-42
sp|P00872|RBS1_LEMGI Ribulose bisphosphate carboxylase small cha... 173 1e-42
sp|P10797|RBS2B_ARATH Ribulose bisphosphate carboxylase small ch... 172 1e-42
sp|Q0INY7|RBS1_ORYSJ Ribulose bisphosphate carboxylase small cha... 172 1e-42
sp|A2Y205|RBS1_ORYSI Ribulose bisphosphate carboxylase small cha... 172 1e-42
sp|Q02980|RBS_MALSP Ribulose bisphosphate carboxylase small chai... 172 2e-42
sp|O65349|RBS_CAPAN Ribulose bisphosphate carboxylase small chai... 172 2e-42
sp|P19309|RBS3_LEMGI Ribulose bisphosphate carboxylase small cha... 172 2e-42
sp|P26667|RBS2_WHEAT Ribulose bisphosphate carboxylase small cha... 172 2e-42

>sp|Q40250|RBS_LACSA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Lactuca sativa GN=RBCS PE=2 SV=1
Length = 181

Score = 181 bits (459), Expect = 4e-45
Identities = 86/157 (54%), Positives = 108/157 (68%), Gaps = 6/157 (3%)
Frame = +2

Query: 110 LSKSFSGLR-----PTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTS 274
L+ F+GL+ P T A + L SNG RV M VW P KK+E LSYLPPL+
Sbjct: 22 LAAPFTGLKSNVAFPVTKKANNDFSSLP-SNGGRVQCMKVWPPIGLKKYETLSYLPPLSD 80

Query: 275 EQIAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAV 451
E ++K++D+++R W PC+EF+ + G VYREH H GYYDGRYW MWKLPMFGC D+A V
Sbjct: 81 EALSKEIDYLIRNKWIPCLEFELEHGFVYREHHHSPGYYDGRYWTMWKLPMFGCTDSAQV 140

Query: 452 LREIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 562
++E+ EC KEYP AFIRV+GFD RQVQ F+V KP
Sbjct: 141 MKEVGECKKEYPNAFIRVIGFDNIRQVQCISFIVAKP 177


>sp|O48550|RBS_ZANAE Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Zantedeschia aethiopica GN=RBCS PE=2
SV=1
Length = 178

Score = 179 bits (453), Expect = 2e-44
Identities = 78/127 (61%), Positives = 95/127 (74%)
Frame = +2

Query: 182 SNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 361
SNG RV M VW P KKFE LSYLPPLT EQ+ ++VD+++R GW PCIEF K+G VYR
Sbjct: 49 SNGLRVRCMQVWPPEGKKKFETLSYLPPLTREQLGQEVDYLIRNGWIPCIEFCKVGFVYR 108

Query: 362 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVS 541
E+ + GYYDGRYW MWKLPMFGC D++ VL+E+ EC+K YP+ F R++GFD RQVQ
Sbjct: 109 EYHNSPGYYDGRYWTMWKLPMFGCTDSSQVLKEVDECSKAYPDYFNRIIGFDNTRQVQCI 168

Query: 542 GFLVQKP 562
FL KP
Sbjct: 169 SFLTYKP 175


>sp|P19312|RBS6_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5B, chloroplastic OS=Lemna gibba GN=SSU5B PE=3 SV=1
Length = 177

Score = 177 bits (449), Expect = 5e-44
Identities = 86/152 (56%), Positives = 104/152 (68%), Gaps = 4/152 (2%)
Frame = +2

Query: 122 FSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAK 289
F+GLR + A K+ N LS SNG RVS M VW P KKFE LSYLPPL+ E +AK
Sbjct: 26 FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 290 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 469
+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86 EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 470 CAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
K YPE F+R++GFD RQVQ F+ KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P19311|RBS5_LEMGI Ribulose bisphosphate carboxylase small chain
SSU5A, chloroplastic OS=Lemna gibba GN=SSU5A PE=3 SV=1
Length = 177

Score = 177 bits (449), Expect = 5e-44
Identities = 86/152 (56%), Positives = 104/152 (68%), Gaps = 4/152 (2%)
Frame = +2

Query: 122 FSGLRPTTL--AAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAK 289
F+GLR + A K+ N LS SNG RVS M VW P KKFE LSYLPPL+ E +AK
Sbjct: 26 FNGLRSSVAFPATRKANNDLSTLPSNGGRVSCMQVWPPEGLKKFETLSYLPPLSVEDLAK 85

Query: 290 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 469
+VD+++R W PCIEF K G VYRE+ GYYDGRYW MWKLPMFGC DA+ V+ E+ E
Sbjct: 86 EVDYLLRNDWVPCIEFSKEGFVYRENHASPGYYDGRYWTMWKLPMFGCTDASQVIAEVEE 145

Query: 470 CAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
K YPE F+R++GFD RQVQ F+ KP+
Sbjct: 146 AKKAYPEYFVRIIGFDNKRQVQCISFIAYKPT 177


>sp|P17673|RBS_TRIRP Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Trifolium repens GN=RBCS PE=3 SV=1
Length = 178

Score = 177 bits (448), Expect = 7e-44
Identities = 84/157 (53%), Positives = 110/157 (70%), Gaps = 4/157 (2%)
Frame = +2

Query: 110 LSKSFSGLRPTT-LAAPKSANPLS--ISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQ 280
L+ F+GL+ + K N ++ SNGSRV+ M VW P KKFE LSYLPPLT EQ
Sbjct: 21 LATPFTGLKSSAGFPVTKKNNDITSITSNGSRVNCMQVWPPVGKKKFETLSYLPPLTDEQ 80

Query: 281 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 457
+ K+V++++RKGW PC+EF+ + G V+R++ GYYDGRYW MW+LP+FG DAA VL+
Sbjct: 81 LLKEVEYLLRKGWVPCVEFELEKGFVHRQYNSSPGYYDGRYWTMWRLPLFGTTDAAQVLK 140

Query: 458 EIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPSV 568
E+AEC EYPEAFIR++GFD RQVQ F+ P V
Sbjct: 141 EVAECKAEYPEAFIRIIGFDNVRQVQCISFIASTPKV 177


>sp|P08705|RBS_HELAN Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Helianthus annuus GN=RBCS PE=2 SV=1
Length = 178

Score = 177 bits (448), Expect = 7e-44
Identities = 87/155 (56%), Positives = 109/155 (70%), Gaps = 8/155 (5%)
Frame = +2

Query: 122 FSGLR-----PTTLAAPKSANPLSI--SNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQ 280
F+GL+ PTT K AN S SNG RV M VW P KK+E LSYLPPLT Q
Sbjct: 25 FTGLKSNAAFPTT----KKANDFSTLPSNGGRVQCMKVWPPLGLKKYETLSYLPPLTETQ 80

Query: 281 IAKQVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLR 457
+AK+VD+++RK W PC+EF+ + G VYRE+ GYYDGRYW MWKLPMFGC D+A V++
Sbjct: 81 LAKEVDYLLRKKWVPCLEFELEHGFVYRENARSPGYYDGRYWTMWKLPMFGCTDSAQVMK 140

Query: 458 EIAECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 562
E+AEC KEYP+A+IR++GFD RQVQ F+ +P
Sbjct: 141 ELAECKKEYPQAWIRIIGFDNVRQVQCIMFIASRP 175


>sp|P10795|RBS1A_ARATH Ribulose bisphosphate carboxylase small chain
1A, chloroplastic OS=Arabidopsis thaliana GN=RBCS-1A
PE=1 SV=2
Length = 180

Score = 177 bits (448), Expect = 7e-44
Identities = 83/152 (54%), Positives = 107/152 (70%), Gaps = 5/152 (3%)
Frame = +2

Query: 122 FSGLRPTTL--AAPKSANPLS--ISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAK 289
F+GL+ + A K+ N ++ SNG RV+ M VW P KKFE LSYLP LT ++AK
Sbjct: 24 FNGLKSSAAFPATRKANNDITSITSNGGRVNCMQVWPPIGKKKFETLSYLPDLTDSELAK 83

Query: 290 QVDFMVRKGWTPCIEFD-KIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
+VD+++R W PC+EF+ + G VYREH + GYYDGRYW MWKLP+FGC D+A VL+E+
Sbjct: 84 EVDYLIRNKWIPCVEFELEHGFVYREHGNSPGYYDGRYWTMWKLPLFGCTDSAQVLKEVE 143

Query: 467 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 562
EC KEYP AFIR++GFD RQVQ F+ KP
Sbjct: 144 ECKKEYPNAFIRIIGFDNTRQVQCISFIAYKP 175


>sp|P16031|RBS_LARLA Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Larix laricina GN=RBCS PE=3 SV=1
Length = 189

Score = 176 bits (447), Expect = 9e-44
Identities = 78/127 (61%), Positives = 96/127 (75%)
Frame = +2

Query: 182 SNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 361
SNGSRV M VW PY NKKFE LSYLP LT EQ+ K+V+++++ W PC+EF++ G + R
Sbjct: 60 SNGSRVRCMQVWPPYANKKFETLSYLPRLTPEQLVKEVEYLLKNKWVPCLEFEEDGEIKR 119

Query: 362 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVS 541
+ + GYYDGRYWVMWKLPMFGC +A+ VL E+ ECAK YP AFIRV+GFD RQVQ
Sbjct: 120 VYGNSPGYYDGRYWVMWKLPMFGCTEASQVLNEVNECAKAYPNAFIRVIGFDNVRQVQCI 179

Query: 542 GFLVQKP 562
F+V KP
Sbjct: 180 SFIVHKP 186


>sp|Q40004|RBS_HORVU Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Hordeum vulgare PE=2 SV=1
Length = 174

Score = 176 bits (447), Expect = 9e-44
Identities = 79/150 (52%), Positives = 103/150 (68%), Gaps = 3/150 (2%)
Frame = +2

Query: 122 FSGLRPTT---LAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQ 292
F GL+ T ++ +A+ S+SNG R+ M VW KKFE LSYLPPL++E + KQ
Sbjct: 16 FQGLKSTAGLPVSRRSNASSASVSNGGRIRCMQVWPIEGIKKFETLSYLPPLSTEALLKQ 75

Query: 293 VDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAEC 472
VD+++R W PC+EF K+G ++REH GYYDGRYW MWKLPMFGC DA VL E+ E
Sbjct: 76 VDYLIRSKWVPCLEFSKVGFIFREHNASPGYYDGRYWTMWKLPMFGCTDATQVLNEVEEV 135

Query: 473 AKEYPEAFIRVLGFDAXRQVQVSGFLVQKP 562
KEYP+A++R++GFD RQVQ F+ KP
Sbjct: 136 KKEYPDAYVRIIGFDNMRQVQCVSFIAFKP 165


>sp|P10053|RBS_PINTH Ribulose bisphosphate carboxylase small chain,
chloroplastic OS=Pinus thunbergii GN=RBCS PE=2 SV=1
Length = 171

Score = 176 bits (446), Expect = 1e-43
Identities = 77/127 (60%), Positives = 95/127 (74%)
Frame = +2

Query: 182 SNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQVDFMVRKGWTPCIEFDKIGSVYR 361
SNG RV M VW P+ N KFE LSYLP LT EQ+ K+V++++R W PC+EFD GS+ R
Sbjct: 44 SNGGRVRCMQVWPPFGNPKFETLSYLPTLTEEQLVKEVEYLLRNKWVPCLEFDLEGSISR 103

Query: 362 EHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECAKEYPEAFIRVLGFDAXRQVQVS 541
++ GYYDGRYWVMWKLPMFGC +A+ V+ E+ ECAK YP+AFIRV+GFD RQVQ
Sbjct: 104 KYNRSPGYYDGRYWVMWKLPMFGCTEASQVINEVRECAKAYPKAFIRVIGFDNVRQVQCI 163

Query: 542 GFLVQKP 562
F+V KP
Sbjct: 164 SFIVHKP 170


tr_hit_id Q43110
Definition tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small chain OS=Pteris vittata
Align length 152
Score (bit) 280.0
E-value 5.0e-74
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943973|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_I23, 5'
(724 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small c... 280 5e-74
tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small c... 198 3e-49
tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small c... 197 6e-49
tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small c... 194 4e-48
tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small c... 193 1e-47
tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small c... 190 7e-47
tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small c... 190 7e-47
tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small c... 184 7e-45
tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small c... 183 9e-45
tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small c... 183 9e-45
tr|Q9SEB9|Q9SEB9_LACSA Ribulose bisphosphate carboxylase small c... 183 1e-44
tr|A9NZM2|A9NZM2_PICSI Ribulose bisphosphate carboxylase small c... 182 3e-44
tr|Q3LFQ4|Q3LFQ4_PANGI Ribulose bisphosphate carboxylase small c... 181 6e-44
tr|A9T9D5|A9T9D5_PHYPA Ribulose bisphosphate carboxylase small c... 181 6e-44
tr|A9TWU8|A9TWU8_PHYPA Ribulose bisphosphate carboxylase small c... 180 7e-44
tr|A9TVU8|A9TVU8_PHYPA Ribulose bisphosphate carboxylase small c... 179 1e-43
tr|A9SRS0|A9SRS0_PHYPA Ribulose bisphosphate carboxylase small c... 179 1e-43
tr|A9PI67|A9PI67_POPTR Ribulose bisphosphate carboxylase small c... 179 2e-43
tr|A9U4X8|A9U4X8_PHYPA Ribulose bisphosphate carboxylase small c... 178 3e-43
tr|A9U4X7|A9U4X7_PHYPA Ribulose bisphosphate carboxylase small c... 178 3e-43
tr|A9SCN2|A9SCN2_PHYPA Ribulose bisphosphate carboxylase small c... 177 5e-43
tr|Q9ZWG6|Q9ZWG6_HORVU Ribulose bisphosphate carboxylase small c... 177 8e-43
tr|Q0WVH4|Q0WVH4_ARATH Ribulose bisphosphate carboxylase small c... 177 8e-43
tr|Q9ZWG3|Q9ZWG3_9POAL Ribulose bisphosphate carboxylase small c... 176 1e-42
tr|Q9ZSS0|Q9ZSS0_9POAL Ribulose bisphosphate carboxylase small c... 176 1e-42
tr|Q9SDY9|Q9SDY9_9POAL Ribulose bisphosphate carboxylase small c... 176 1e-42
tr|Q9SBU5|Q9SBU5_9POAL Ribulose bisphosphate carboxylase small c... 176 1e-42
tr|Q5I8Y4|Q5I8Y4_9FABA Ribulose bisphosphate carboxylase small c... 176 1e-42
tr|A7LIT5|A7LIT5_9ROSI Ribulose bisphosphate carboxylase small c... 176 1e-42
tr|A5PJI4|A5PJI4_BOVIN Putative uncharacterized protein OS=Bos t... 176 1e-42

>tr|Q43110|Q43110_PTEVI Ribulose bisphosphate carboxylase small
chain OS=Pteris vittata GN=rbcS4 PE=3 SV=1
Length = 174

Score = 280 bits (717), Expect = 5e-74
Identities = 130/152 (85%), Positives = 142/152 (93%)
Frame = +2

Query: 110 LSKSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAK 289
LSKSFSGL+ TL APK ANPL+ISNGSR+SAMLVWKPYDNKKFE LSYLPPLT++QIAK
Sbjct: 22 LSKSFSGLKANTLFAPKCANPLAISNGSRISAMLVWKPYDNKKFETLSYLPPLTNDQIAK 81

Query: 290 QVDFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAE 469
QV++MVRKGWTPCIEFD IGSVYREHFHGSGYYDGRYW+MWKLPMFGC D+ +VLREIAE
Sbjct: 82 QVEYMVRKGWTPCIEFDTIGSVYREHFHGSGYYDGRYWIMWKLPMFGCTDSGSVLREIAE 141

Query: 470 CAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
CAKEYP AFIRVLGFDA RQVQV+GFLV+KPS
Sbjct: 142 CAKEYPTAFIRVLGFDAKRQVQVAGFLVKKPS 173


>tr|A9T3X7|A9T3X7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87752 PE=3 SV=1
Length = 179

Score = 198 bits (504), Expect = 3e-49
Identities = 93/153 (60%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQV 295
K FSGL+ TTL+A K+ S+ NGSRV M VW P KFE SYLPPLT +QIAKQV
Sbjct: 27 KQFSGLKSTTLSASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
DFM+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A VLREI
Sbjct: 87 DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 467 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
EC + +P ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9T3W5|A9T3W5_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_87740 PE=3 SV=1
Length = 179

Score = 197 bits (501), Expect = 6e-49
Identities = 93/153 (60%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQV 295
K FSGL+ TTL A K+ S+ NGSRV M VW P KFE SYLPPLT +QIAKQV
Sbjct: 27 KQFSGLKSTTLFASKARRLSSVHNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 86

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
DFM+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D+A VLREI
Sbjct: 87 DFMIQQNLIPCIEFDTVGSVSRTNFSGPGSSGYYDGRYWTMWKLPMFGCTDSAQVLREIQ 146

Query: 467 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
EC + +P ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 147 ECKQSFPSCWVRVLGFDSKKQVQICGFLVARPN 179


>tr|A9TCL7|A9TCL7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_221004 PE=3 SV=1
Length = 184

Score = 194 bits (494), Expect = 4e-48
Identities = 89/153 (58%), Positives = 113/153 (73%), Gaps = 3/153 (1%)
Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQV 295
K+FSGL+P TL + K+ ++ NGSRV M VW P KFE SYLPPLT +QIAKQV
Sbjct: 32 KAFSGLKPATLFSSKTQKLGAVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 92 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 467 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
EC ++P ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 152 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 184


>tr|Q9SXH1|Q9SXH1_PHYPA Ribulose bisphosphate carboxylase small
chain (Fragment) OS=Physcomitrella patens PE=2 SV=1
Length = 214

Score = 193 bits (490), Expect = 1e-47
Identities = 89/153 (58%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQV 295
K+FSGL+ TL + K+ S+ NGSRV M VW P KFE SYLPPLT +QIAKQV
Sbjct: 62 KAFSGLKSATLFSGKTQKLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDQIAKQV 121

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 122 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 181

Query: 467 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
EC ++P ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 182 ECKSQFPSCWVRVLGFDSKKQVQICGFLVSRPN 214


>tr|Q75WT7|Q75WT7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens GN=PprbcS1
PE=2 SV=1
Length = 184

Score = 190 bits (483), Expect = 7e-47
Identities = 88/153 (57%), Positives = 110/153 (71%), Gaps = 3/153 (1%)
Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQV 295
K+FSGL+ TL KS S+ NGSRV M VW P KFE SYLPPL+ +QIA+QV
Sbjct: 32 KAFSGLKSATLFTSKSQQLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLSDDQIARQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
D+M+++ PCIEFD +G+V R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 92 DYMIQQNLIPCIEFDTVGAVSRTNFSGSGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 151

Query: 467 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
EC YP ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 152 ECKTSYPSCWVRVLGFDSKKQVQICGFLVARPN 184


>tr|A9TT85|A9TT85_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_225236 PE=3 SV=1
Length = 183

Score = 190 bits (483), Expect = 7e-47
Identities = 87/153 (56%), Positives = 112/153 (73%), Gaps = 3/153 (1%)
Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQV 295
K+FSGL+ TL + ++ S+ NGSRV M VW P KFE SYLPPLT ++IAKQV
Sbjct: 31 KAFSGLKSATLFSSQAQTLSSVQNGSRVQCMQVWNPIGQPKFETFSYLPPLTDDEIAKQV 90

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHG---SGYYDGRYWVMWKLPMFGCQDAAAVLREIA 466
D+M+++ PCIEFD +GSV R +F G SGYYDGRYW MWKLPMFGC D++ VLREI
Sbjct: 91 DYMIQQNLIPCIEFDTVGSVSRTNFSGAGSSGYYDGRYWTMWKLPMFGCTDSSQVLREIQ 150

Query: 467 ECAKEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
EC ++P ++RVLGFD+ +QVQ+ GFLV +P+
Sbjct: 151 ECKTQFPSCWVRVLGFDSKKQVQICGFLVSRPN 183


>tr|A9RJ57|A9RJ57_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_115069 PE=3 SV=1
Length = 181

Score = 184 bits (466), Expect = 7e-45
Identities = 84/150 (56%), Positives = 106/150 (70%)
Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQV 295
K+FSGL+ T+ + K+ N S+ NGSRV M VW P KFE SYLPPL+ + IAKQV
Sbjct: 32 KAFSGLKSATVFSGKAQNSSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 475
++M+++ PC+EFD V R + GYYDGRYW MWKLPMFGCQD+A VLREI EC
Sbjct: 92 EYMIQQKLIPCLEFDNANGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 476 KEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9TKI7|A9TKI7_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_146969 PE=3 SV=1
Length = 181

Score = 183 bits (465), Expect = 9e-45
Identities = 85/150 (56%), Positives = 106/150 (70%)
Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQV 295
K+FSGL+ +TL + K+ + S+ NGSRV M VW P KFE SYLPPL+ + IAKQV
Sbjct: 32 KAFSGLKSSTLFSSKAQSLSSVQNGSRVQCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 475
D+M+++ PC+EFD V R + GYYDGRYW MWKLPMFGCQD A VLREI EC
Sbjct: 92 DYMIQQKLIPCLEFDNADGVSRTNNSSPGYYDGRYWTMWKLPMFGCQDPAQVLREIEECK 151

Query: 476 KEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181


>tr|A9S3R8|A9S3R8_PHYPA Ribulose bisphosphate carboxylase small
chain OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_123666 PE=3 SV=1
Length = 181

Score = 183 bits (465), Expect = 9e-45
Identities = 85/150 (56%), Positives = 107/150 (71%)
Frame = +2

Query: 116 KSFSGLRPTTLAAPKSANPLSISNGSRVSAMLVWKPYDNKKFEILSYLPPLTSEQIAKQV 295
K+FSGL+ TL + +S S+ NGSRV+ M VW P KFE SYLPPL+ + IAKQV
Sbjct: 32 KAFSGLKSATLFSSQSQQLSSVQNGSRVNCMQVWNPIGMTKFETFSYLPPLSDDAIAKQV 91

Query: 296 DFMVRKGWTPCIEFDKIGSVYREHFHGSGYYDGRYWVMWKLPMFGCQDAAAVLREIAECA 475
++M+++ PC+EFD V RE+ GYYDGRYW MWKLPMFGCQD+A VLREI EC
Sbjct: 92 EYMIQQKLIPCLEFDNSKGVTRENNSSPGYYDGRYWTMWKLPMFGCQDSAQVLREIEECK 151

Query: 476 KEYPEAFIRVLGFDAXRQVQVSGFLVQKPS 565
K +P F+RVLGFD +QVQ+ GFLV +P+
Sbjct: 152 KTFPGCFVRVLGFDNVKQVQICGFLVARPN 181