DK943978 |
Clone id |
YMU02A01NGRL0004_J07 |
Library |
YMU02 |
Length |
582 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_J07. 5' end sequence. |
Accession |
DK943978 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL999Contig1 |
Sequence |
AAACGCGATGAGCGGAGGCGGAGGTGCAGGATCTAAAACTCCTGCTGATTTTCTCAAATC TATACGTGGCCGTCCTGTGGTCGTCAAGCTAAACTCGGGAGTCGATTATCGAGGTATTTT AGCTTGTCTTGATGGCTATATGAACATTGCAATGGAGCAAACGGAGGAATATGTAAATGG GCAACTGAAGAACAAGTATGGAGATGCCTTTATTAGAGGGAATAATGTACTATACATCAG TACTTCCAAACGGACAATGAGCGAGGGAGCTTAAGCAGAGGATAGTGAGGGTGGTCTATC CTTTGATGGATCAAAATGGGCTTATTTGCTTTAGATCTGATTTGACATAGTCTCTCACGT GCATTGTGCAAATCAATAAATGACTGTGATTTATGGACAACATGAGGTATACTGAGGTAA TTCTTTTCTGAAGAGGGTGGGTGATATTAACTATGACTTACTGCATAGTTCTCCAACTGT TTCACTGCAGAATGGTTATCGACAATGCAAGCTTTTTCCAATGATAGTATATATTGACTT TATGAACTTGGAACTGATTAAAGAGTCCTGACTGGAACTGAT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P62313 |
Definition |
sp|P62313|LSM6_MOUSE U6 snRNA-associated Sm-like protein LSm6 OS=Mus musculus |
Align length |
75 |
Score (bit) |
140.0 |
E-value |
3.0e-33 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9P0Y1 |
Definition |
tr|A9P0Y1|A9P0Y1_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
91 |
Score (bit) |
166.0 |
E-value |
1.0e-39 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK943978|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_J07, 5' (582 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9P0Y1|A9P0Y1_PICSI Putative uncharacterized protein OS=Picea... 166 1e-39 tr|A9NPB2|A9NPB2_PICSI Putative uncharacterized protein OS=Picea... 166 1e-39 tr|B8AIQ3|B8AIQ3_ORYSI Putative uncharacterized protein OS=Oryza... 165 2e-39 tr|Q6K2E9|Q6K2E9_ORYSJ cDNA clone:001-016-D10, full insert seque... 164 3e-39 tr|Q0E0Z4|Q0E0Z4_ORYSJ Os02g0510100 protein (Fragment) OS=Oryza ... 164 3e-39 tr|A9PAG8|A9PAG8_POPTR Putative uncharacterized protein OS=Popul... 162 1e-38 tr|Q0JDN9|Q0JDN9_ORYSJ Os04g0388900 protein OS=Oryza sativa subs... 162 1e-38 tr|B8AT78|B8AT78_ORYSI Putative uncharacterized protein OS=Oryza... 162 1e-38 tr|A9PAM0|A9PAM0_POPTR Putative uncharacterized protein OS=Popul... 162 2e-38 tr|B4FCE3|B4FCE3_MAIZE Putative uncharacterized protein OS=Zea m... 161 3e-38 tr|A9RMX0|A9RMX0_PHYPA Predicted protein OS=Physcomitrella paten... 152 1e-35 tr|O22823|O22823_ARATH Putative small nuclear ribonucleoprotein ... 151 3e-35 tr|Q8LCS5|Q8LCS5_ARATH U6 snRNA-associated Sm-like protein OS=Ar... 147 3e-34 tr|Q9M1Z3|Q9M1Z3_ARATH U6 snRNA-associated Sm-like protein OS=Ar... 147 4e-34 tr|A9T4B1|A9T4B1_PHYPA Predicted protein OS=Physcomitrella paten... 147 4e-34 tr|Q66KU9|Q66KU9_XENLA MGC85411 protein OS=Xenopus laevis GN=lsm... 140 4e-32 tr|Q0VFB8|Q0VFB8_XENTR MGC147213 protein OS=Xenopus tropicalis G... 140 4e-32 tr|B5FY51|B5FY51_TAEGU Putative LSM6 homolog U6 small nuclear RN... 140 4e-32 tr|Q542U7|Q542U7_MOUSE LSM6 homolog, U6 small nuclear RNA associ... 140 4e-32 tr|Q148G9|Q148G9_BOVIN LSM6 homolog, U6 small nuclear RNA associ... 140 4e-32 tr|Q4W5J5|Q4W5J5_HUMAN Putative uncharacterized protein LSM6 (LS... 140 4e-32 tr|Q6IMW9|Q6IMW9_DANRE LSM6 homolog, U6 small nuclear RNA associ... 139 9e-32 tr|Q4RKM2|Q4RKM2_TETNG Chromosome 18 SCAF15027, whole genome sho... 138 3e-31 tr|B6N340|B6N340_BRAFL Putative uncharacterized protein OS=Branc... 137 4e-31 tr|A8J2L7|A8J2L7_CHLRE U6 small ribonucleoprotein F OS=Chlamydom... 136 1e-30 tr|A7SUU3|A7SUU3_NEMVE Predicted protein OS=Nematostella vectens... 135 2e-30 tr|B3SA11|B3SA11_TRIAD Putative uncharacterized protein OS=Trich... 135 2e-30 tr|Q95XN6|Q95XN6_CAEEL Lsm sm-like protein protein 6 OS=Caenorha... 130 7e-29 tr|A8Y1N3|A8Y1N3_CAEBR CBR-LSM-6 protein OS=Caenorhabditis brigg... 130 7e-29 tr|Q7Q7G9|Q7Q7G9_ANOGA AGAP005314-PA OS=Anopheles gambiae GN=AGA... 129 1e-28
>tr|A9P0Y1|A9P0Y1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 91
Score = 166 bits (419), Expect = 1e-39 Identities = 83/91 (91%), Positives = 85/91 (93%), Gaps = 3/91 (3%) Frame = +2
Query: 8 MSGGGGAG---SKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 178 MSGGG G +KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN Sbjct: 1 MSGGGSGGGTSAKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 179 GQLKNKYGDAFIRGNNVLYISTSKRTMSEGA 271 GQLKNKYGDAFIRGNNVLYISTSKRT+ EGA Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLGEGA 91
>tr|A9NPB2|A9NPB2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 91
Score = 166 bits (419), Expect = 1e-39 Identities = 83/91 (91%), Positives = 86/91 (94%), Gaps = 3/91 (3%) Frame = +2
Query: 8 MSGGG---GAGSKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 178 MSGGG GA +KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN Sbjct: 1 MSGGGSGGGASAKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 179 GQLKNKYGDAFIRGNNVLYISTSKRTMSEGA 271 GQLKNKYGDAFIRGNNVLYISTSKR++ EGA Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRSLGEGA 91
>tr|B8AIQ3|B8AIQ3_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_07364 PE=4 SV=1 Length = 97
Score = 165 bits (417), Expect = 2e-39 Identities = 81/88 (92%), Positives = 86/88 (97%), Gaps = 1/88 (1%) Frame = +2
Query: 11 SGGGGAGS-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL 187 SGGGG G+ KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL Sbjct: 10 SGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL 69
Query: 188 KNKYGDAFIRGNNVLYISTSKRTMSEGA 271 KNKYGDAFIRGNNVLYISTSKRT+++GA Sbjct: 70 KNKYGDAFIRGNNVLYISTSKRTLTDGA 97
>tr|Q6K2E9|Q6K2E9_ORYSJ cDNA clone:001-016-D10, full insert sequence OS=Oryza sativa subsp. japonica GN=OSJNBa0052M16.37 PE=4 SV=1 Length = 101
Score = 164 bits (416), Expect = 3e-39 Identities = 79/86 (91%), Positives = 83/86 (96%) Frame = +2
Query: 14 GGGGAGSKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 193 GGGG KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN Sbjct: 16 GGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 75
Query: 194 KYGDAFIRGNNVLYISTSKRTMSEGA 271 KYGDAFIRGNNVLYISTSKRT+++GA Sbjct: 76 KYGDAFIRGNNVLYISTSKRTLTDGA 101
>tr|Q0E0Z4|Q0E0Z4_ORYSJ Os02g0510100 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os02g0510100 PE=4 SV=1 Length = 96
Score = 164 bits (416), Expect = 3e-39 Identities = 79/86 (91%), Positives = 83/86 (96%) Frame = +2
Query: 14 GGGGAGSKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 193 GGGG KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN Sbjct: 11 GGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 70
Query: 194 KYGDAFIRGNNVLYISTSKRTMSEGA 271 KYGDAFIRGNNVLYISTSKRT+++GA Sbjct: 71 KYGDAFIRGNNVLYISTSKRTLTDGA 96
>tr|A9PAG8|A9PAG8_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 91
Score = 162 bits (411), Expect = 1e-38 Identities = 82/91 (90%), Positives = 85/91 (93%), Gaps = 3/91 (3%) Frame = +2
Query: 8 MSGGGGAGS---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 178 MS GG GS KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN Sbjct: 1 MSSGGEKGSTTTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 179 GQLKNKYGDAFIRGNNVLYISTSKRTMSEGA 271 GQLKNKYGDAFIRGNNVLYISTSKRT+++GA Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
>tr|Q0JDN9|Q0JDN9_ORYSJ Os04g0388900 protein OS=Oryza sativa subsp. japonica GN=Os04g0388900 PE=4 SV=1 Length = 97
Score = 162 bits (410), Expect = 1e-38 Identities = 80/88 (90%), Positives = 85/88 (96%), Gaps = 1/88 (1%) Frame = +2
Query: 11 SGGGGAGS-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL 187 SGGGG G+ KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL Sbjct: 10 SGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL 69
Query: 188 KNKYGDAFIRGNNVLYISTSKRTMSEGA 271 KNKYGDAFIRGNNVLYISTSKRT+++ A Sbjct: 70 KNKYGDAFIRGNNVLYISTSKRTLTDDA 97
>tr|B8AT78|B8AT78_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_15663 PE=4 SV=1 Length = 97
Score = 162 bits (410), Expect = 1e-38 Identities = 80/88 (90%), Positives = 85/88 (96%), Gaps = 1/88 (1%) Frame = +2
Query: 11 SGGGGAGS-KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL 187 SGGGG G+ KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL Sbjct: 10 SGGGGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQL 69
Query: 188 KNKYGDAFIRGNNVLYISTSKRTMSEGA 271 KNKYGDAFIRGNNVLYISTSKRT+++ A Sbjct: 70 KNKYGDAFIRGNNVLYISTSKRTLTDDA 97
>tr|A9PAM0|A9PAM0_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 91
Score = 162 bits (409), Expect = 2e-38 Identities = 82/91 (90%), Positives = 85/91 (93%), Gaps = 3/91 (3%) Frame = +2
Query: 8 MSGGGGAGS---KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 178 MS GG GS KTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN Sbjct: 1 MSTGGEKGSATTKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVN 60
Query: 179 GQLKNKYGDAFIRGNNVLYISTSKRTMSEGA 271 GQLKNKYGDAFIRGNNVLYISTSKRT+++GA Sbjct: 61 GQLKNKYGDAFIRGNNVLYISTSKRTLADGA 91
>tr|B4FCE3|B4FCE3_MAIZE Putative uncharacterized protein OS=Zea mays PE=4 SV=1 Length = 95
Score = 161 bits (407), Expect = 3e-38 Identities = 77/86 (89%), Positives = 82/86 (95%) Frame = +2
Query: 14 GGGGAGSKTPADFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 193 G GG KTP+DFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN Sbjct: 10 GSGGGAVKTPSDFLKSIRGRPVVVKLNSGVDYRGILACLDGYMNIAMEQTEEYVNGQLKN 69
Query: 194 KYGDAFIRGNNVLYISTSKRTMSEGA 271 KYGDAFIRGNNVLYIST+KRT+++GA Sbjct: 70 KYGDAFIRGNNVLYISTTKRTLADGA 95
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