DK943986
Clone id YMU02A01NGRL0004_J19
Library
Length 363
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_J19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TATCGTAGCGGGTATAGTTTAGTGGTAAAAATGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAAACTTTATCTTCGCAGAAAA
TATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCAT
TCATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAAT
ACTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGT
CTAAGATAGCTGACTCATCGTCACTAAACCTCAGAAAAAAAAAAAAAAAAAAAAAAAAAA
AAA
■■Homology search results ■■ -
sp_hit_id P33434
Definition sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
Align length 43
Score (bit) 31.2
E-value 1.7
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943986|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_J19, 5'
(334 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus ... 31 1.7
sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens ... 31 1.7
sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus GN... 31 1.7
sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegic... 31 2.2
sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus c... 29 6.4

>sp|P33434|MMP2_MOUSE 72 kDa type IV collagenase OS=Mus musculus
GN=Mmp2 PE=2 SV=1
Length = 662

Score = 31.2 bits (69), Expect = 1.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTFLPLN 17
W NKKT+IF DK + + + + DP K+ A +P N
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|P08253|MMP2_HUMAN 72 kDa type IV collagenase OS=Homo sapiens
GN=MMP2 PE=1 SV=2
Length = 660

Score = 31.2 bits (69), Expect = 1.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTFLPLN 17
W NKKT+IF DK + + + + DP K+ A +P N
Sbjct: 574 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 616


>sp|Q9GLE5|MMP2_BOVIN 72 kDa type IV collagenase OS=Bos taurus
GN=MMP2 PE=2 SV=1
Length = 661

Score = 31.2 bits (69), Expect = 1.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTFLPLN 17
W NKKT+IF DK + + + + DP K+ A +P N
Sbjct: 575 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPKLIADAWNAIPDN 617


>sp|P33436|MMP2_RAT 72 kDa type IV collagenase OS=Rattus norvegicus
GN=Mmp2 PE=2 SV=2
Length = 662

Score = 30.8 bits (68), Expect = 2.2
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTFLPLN 17
W NKKT+IF DK + + + + DP K+ A +P N
Sbjct: 576 WSKNKKTYIFSGDKFWRYNEVKKKMDPGFPKLIADSWNAIPDN 618


>sp|P50757|MMP2_RABIT 72 kDa type IV collagenase OS=Oryctolagus
cuniculus GN=MMP2 PE=2 SV=1
Length = 662

Score = 29.3 bits (64), Expect = 6.4
Identities = 13/41 (31%), Positives = 21/41 (51%)
Frame = -1

Query: 145 WRNNKKTHIFCEDKVFFFQLI*PRYDPSTIKITARRVTFLP 23
W NKKT+IF DK + + + + DP ++ A +P
Sbjct: 576 WSKNKKTYIFAGDKFWRYNEVKKKMDPGFPRLIADAWNAIP 616


tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK943986|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_J19, 5'
(334 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

***** No hits found ******