NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK943993
Clone id YMU02A01NGRL0004_K05
Library
Length 236
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_K05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTGCTATACAGGTGGTTTAGTACAAGTCGCTCACTTGTTACCTGTCAGAATTTGGAGGTT
GAAGAAAATGGGCTATACCCTCAATGGGTGCTTAAATAAAGCATGAGCATAGTAACTTCA
CATACATGCATTTTTGATTTATTTTGAGTCTTCGGCTCCTTGTTTCTATTTTTTGACTGC
ATGGATGTAGAGGAATGGCTTTAGTTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943993|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_K05, 5'
         (206 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id B3QEX9
Definition tr|B3QEX9|B3QEX9_RHOPT Putative uncharacterized protein OS=Rhodopseudomonas palustris (strain TIE-1)
Align length 50
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK943993|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_K05, 5'
         (206 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B3QEX9|B3QEX9_RHOPT Putative uncharacterized protein OS=Rhodo...    35   2.4  
tr|Q6CQM4|Q6CQM4_KLULA KLLA0D16005p OS=Kluyveromyces lactis GN=K...    34   4.1  

>tr|B3QEX9|B3QEX9_RHOPT Putative uncharacterized protein
           OS=Rhodopseudomonas palustris (strain TIE-1)
           GN=Rpal_3987 PE=4 SV=1
          Length = 134

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/50 (38%), Positives = 29/50 (58%)
 Frame = -2

Query: 205 TKAIPLHPCSQKIETRSRRLKINQKCMYVKLLCSCFI*APIEGIAHFLQP 56
           +K++PLH   Q + ++  R KI ++C  + +L   FI  P EGIAH   P
Sbjct: 65  SKSMPLHKNGQGLSSKLLRGKIIERCAQIFVLPCRFI-NPFEGIAHLQSP 113


>tr|Q6CQM4|Q6CQM4_KLULA KLLA0D16005p OS=Kluyveromyces lactis
           GN=KLLA0D16005g PE=4 SV=1
          Length = 1170

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 16/33 (48%), Positives = 25/33 (75%), Gaps = 1/33 (3%)
 Frame = -1

Query: 200 SHSSTSMQSKNRNKEPKTQNKS-KMHVCEVTML 105
           +H+S +MQ  NRN+E  TQ K+ +MH+C++T L
Sbjct: 735 AHASNAMQLFNRNEEILTQLKNCEMHICQLTSL 767