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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944003
Clone id YMU02A01NGRL0004_K18
Library
Length 393
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_K18. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
TGCATGTGACATGTCTTGTGCTTCTAGGGAGGTTTTAACGTAGTAGGAACAATCGAGGTG
TTTGGTGATCTATCTCACATAAATTCTGGGTTCCTTCATAAGTTGCAAGCAAACTGACGT
GTTGCTTTGTGTGGTTAAGGCTTCAGATTACGGGCAGCACAGGAGTACAGATGGGTAACC
TTTTTCCATCAGGCATTTCAATTTGCCCTGTATACAAAATGTGCACCAAAAAGGAGGGGT
GACTGCATCCTCTCAATTCAAGTTTGGGTACACTATCTCTTTTAAACCGTTACATTTGTG
CCTATGACATTGTTCTCAATCCCTACAACATATTGGTTCCAGTAGTAGGACCCATTCTTT
GGCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A4XR36
Definition sp|A4XR36|MOAC_PSEMY Molybdenum cofactor biosynthesis protein C OS=Pseudomonas mendocina (strain ymp)
Align length 35
Score (bit) 29.6
E-value 4.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944003|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_K18, 5'
         (363 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A4XR36|MOAC_PSEMY Molybdenum cofactor biosynthesis protein C ...    30   4.9  
sp|P48423|GAP1_DROME GTPase-activating protein OS=Drosophila mel...    30   4.9  
sp|Q66D58|MOAC_YERPS Molybdenum cofactor biosynthesis protein C ...    29   6.4  
sp|A4TNP7|MOAC_YERPP Molybdenum cofactor biosynthesis protein C ...    29   6.4  
sp|Q1CFR2|MOAC_YERPN Molybdenum cofactor biosynthesis protein C ...    29   6.4  
sp|Q8ZGW4|MOAC_YERPE Molybdenum cofactor biosynthesis protein C ...    29   6.4  
sp|Q1C938|MOAC_YERPA Molybdenum cofactor biosynthesis protein C ...    29   6.4  
sp|A7FKM0|MOAC_YERP3 Molybdenum cofactor biosynthesis protein C ...    29   6.4  
sp|A8GBD6|MOAC_SERP5 Molybdenum cofactor biosynthesis protein C ...    29   6.4  

>sp|A4XR36|MOAC_PSEMY Molybdenum cofactor biosynthesis protein C
           OS=Pseudomonas mendocina (strain ymp) GN=moaC PE=3 SV=1
          Length = 158

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 11/35 (31%), Positives = 20/35 (57%)
 Frame = +3

Query: 120 CCFVWLRLQITGSTGVQMGNLFPSGISICPVYKMC 224
           C  +  R +++G TGV+M  L  + ++   +Y MC
Sbjct: 93  CVHITARCKLSGQTGVEMEALTAASVAALTIYDMC 127


>sp|P48423|GAP1_DROME GTPase-activating protein OS=Drosophila
           melanogaster GN=Gap1 PE=2 SV=2
          Length = 1163

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 15/38 (39%), Positives = 22/38 (57%)
 Frame = -3

Query: 193 PDGKRLPICTPVLPVI*SLNHTKQHVSLLATYEGTQNL 80
           P G RL + + +  +  +LN+T  HV  LATY+   NL
Sbjct: 443 PPGTRLSVDSTIGSLRLNLNYTADHVFPLATYDDLMNL 480


>sp|Q66D58|MOAC_YERPS Molybdenum cofactor biosynthesis protein C
           OS=Yersinia pseudotuberculosis GN=moaC PE=3 SV=1
          Length = 159

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 TCCFVWLRLQITGSTGVQMGNLFPSGISICPVYKMC 224
           TCC      ++TG TGV+M  L  + ++   +Y MC
Sbjct: 101 TCC------RLTGKTGVEMEALTAASVAALTIYDMC 130


>sp|A4TNP7|MOAC_YERPP Molybdenum cofactor biosynthesis protein C
           OS=Yersinia pestis (strain Pestoides F) GN=moaC PE=3
           SV=1
          Length = 159

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 TCCFVWLRLQITGSTGVQMGNLFPSGISICPVYKMC 224
           TCC      ++TG TGV+M  L  + ++   +Y MC
Sbjct: 101 TCC------RLTGKTGVEMEALTAASVAALTIYDMC 130


>sp|Q1CFR2|MOAC_YERPN Molybdenum cofactor biosynthesis protein C
           OS=Yersinia pestis bv. Antiqua (strain Nepal516) GN=moaC
           PE=3 SV=1
          Length = 159

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 TCCFVWLRLQITGSTGVQMGNLFPSGISICPVYKMC 224
           TCC      ++TG TGV+M  L  + ++   +Y MC
Sbjct: 101 TCC------RLTGKTGVEMEALTAASVAALTIYDMC 130


>sp|Q8ZGW4|MOAC_YERPE Molybdenum cofactor biosynthesis protein C
           OS=Yersinia pestis GN=moaC PE=3 SV=1
          Length = 159

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 TCCFVWLRLQITGSTGVQMGNLFPSGISICPVYKMC 224
           TCC      ++TG TGV+M  L  + ++   +Y MC
Sbjct: 101 TCC------RLTGKTGVEMEALTAASVAALTIYDMC 130


>sp|Q1C938|MOAC_YERPA Molybdenum cofactor biosynthesis protein C
           OS=Yersinia pestis bv. Antiqua (strain Antiqua) GN=moaC
           PE=3 SV=1
          Length = 159

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 TCCFVWLRLQITGSTGVQMGNLFPSGISICPVYKMC 224
           TCC      ++TG TGV+M  L  + ++   +Y MC
Sbjct: 101 TCC------RLTGKTGVEMEALTAASVAALTIYDMC 130


>sp|A7FKM0|MOAC_YERP3 Molybdenum cofactor biosynthesis protein C
           OS=Yersinia pseudotuberculosis serotype O:1b (strain IP
           31758) GN=moaC PE=3 SV=1
          Length = 159

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 TCCFVWLRLQITGSTGVQMGNLFPSGISICPVYKMC 224
           TCC      ++TG TGV+M  L  + ++   +Y MC
Sbjct: 101 TCC------RLTGKTGVEMEALTAASVAALTIYDMC 130


>sp|A8GBD6|MOAC_SERP5 Molybdenum cofactor biosynthesis protein C
           OS=Serratia proteamaculans (strain 568) GN=moaC PE=3
           SV=1
          Length = 159

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 13/36 (36%), Positives = 20/36 (55%)
 Frame = +3

Query: 117 TCCFVWLRLQITGSTGVQMGNLFPSGISICPVYKMC 224
           TCC      ++TG TGV+M  L  + ++   +Y MC
Sbjct: 101 TCC------RLTGKTGVEMEALTAASVAALTIYDMC 130
tr_hit_id Q9BJW5
Definition tr|Q9BJW5|Q9BJW5_CAEEL CLN-3.3 (Cln (Neuronal ceroid lipofuscinosis) related protein 3.3) OS=Caenorhabditis elegans
Align length 70
Score (bit) 34.3
E-value 3.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944003|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_K18, 5'
         (363 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9BJW5|Q9BJW5_CAEEL CLN-3.3 (Cln (Neuronal ceroid lipofuscino...    34   3.2  
tr|A8WQH0|A8WQH0_CAEBR CBR-CLN-3.3 protein OS=Caenorhabditis bri...    34   3.2  
tr|Q9GPK9|Q9GPK9_DICDI Putative calmodulin-binding protein CamBP...    33   7.1  

>tr|Q9BJW5|Q9BJW5_CAEEL CLN-3.3 (Cln (Neuronal ceroid
           lipofuscinosis) related protein 3.3) OS=Caenorhabditis
           elegans GN=cln-3.3 PE=2 SV=1
          Length = 417

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 18/70 (25%), Positives = 30/70 (42%)
 Frame = +1

Query: 130 CG*GFRLRAAQEYRWVTFFHQAFQFALYTKCAPKRRGDCILSIQVWVHYLF*TVTFVPMT 309
           C  GF L    +YRW   +   +QF ++   +  R    ++ + +W+ YL   +    M 
Sbjct: 281 CAHGFNLSLHSQYRW---YQVLYQFGVFVSRSSIR----LVELPMWMLYLLPFLQLTNML 333

Query: 310 LFSIPTTYWF 339
            F     YWF
Sbjct: 334 FFFFDALYWF 343


>tr|A8WQH0|A8WQH0_CAEBR CBR-CLN-3.3 protein OS=Caenorhabditis
           briggsae GN=Cbr-cln-3.3 PE=4 SV=2
          Length = 416

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 20/70 (28%), Positives = 27/70 (38%)
 Frame = +1

Query: 130 CG*GFRLRAAQEYRWVTFFHQAFQFALYTKCAPKRRGDCILSIQVWVHYLF*TVTFVPMT 309
           C  GF L    +YRW    +Q   FA        R    ++ + +WV YL   +    M 
Sbjct: 280 CKHGFNLSLHSQYRWYQVLYQFGVFA-------SRSSIKLIELPMWVLYLLPILQLSNML 332

Query: 310 LFSIPTTYWF 339
            F     YWF
Sbjct: 333 FFFFDALYWF 342


>tr|Q9GPK9|Q9GPK9_DICDI Putative calmodulin-binding protein CamBP64
           (Repeat containing protein) OS=Dictyostelium discoideum
           GN=DDB_0214923 PE=2 SV=1
          Length = 581

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)
 Frame = -1

Query: 345 LLEPICCRD*EQCHRHKC---NGLKEIVYPNLN*EDAVTPPFWCTFCIQGKLKCLMEKGY 175
           +LEPI C D ++C   +C   +G K  V PNL+             C+ G  KC      
Sbjct: 365 ILEPIDCDDNDECTVDECSITSGCKHTVCPNLDKSGKTE-----IKCVNG--KCQTRVKS 417

Query: 174 PSVLLCCP*S----EALTTQSNTSVCLQL 100
           P  L+ CP      E      N ++CL +
Sbjct: 418 PCELMTCPNDTICIENYNNTKNLTICLPI 446