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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944006
Clone id YMU02A01NGRL0004_K22
Library
Length 281
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_K22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAAAGCAGTGGTATCAACGCAGAGTGGCCATGGCGGACCCGGGGGTGGTCACGGAGGTCA
TCACTAGATCCAGCCTCTTCTCCTACCCTCACTCTATACATATCATGAGTACGTGCTCGC
TTTGAGCGCTGAGCTCCCCTTCCTTCCTGTTTGTAAGTATTCGAATGTTCGAAAGGTGAA
TAAAGTAGGCTAATATGTTGTAAGTTGCCTGTTTTGCTTATCTTCGTCATCTTACCTAAT
GTAATGTGGCCTTTAAGTCTATAAAAGGTTTATTTTTCTGA
■■Homology search results ■■ -
sp_hit_id O74381
Definition sp|O74381|POF9_SCHPO F-box protein pof9 OS=Schizosaccharomyces pombe
Align length 28
Score (bit) 30.4
E-value 2.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944006|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_K22, 5'
         (250 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O74381|POF9_SCHPO F-box protein pof9 OS=Schizosaccharomyces p...    30   2.8  
sp|O94892|ZN432_HUMAN Zinc finger protein 432 OS=Homo sapiens GN...    30   4.9  
sp|P19524|MYO2_YEAST Myosin-2 OS=Saccharomyces cerevisiae GN=MYO...    29   6.3  
sp|Q875X3|MYO2A_SACCA Myosin-2A OS=Saccharomyces castellii GN=MY...    29   8.3  

>sp|O74381|POF9_SCHPO F-box protein pof9 OS=Schizosaccharomyces
           pombe GN=pof9 PE=1 SV=1
          Length = 467

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 2   ADPGVVTEVITRSSLFSYPHSIHIMSTC 85
           +DP +V++  T  ++ S PH IH   TC
Sbjct: 383 SDPSIVSDPRTARNIVSIPHQIHFSGTC 410


>sp|O94892|ZN432_HUMAN Zinc finger protein 432 OS=Homo sapiens
           GN=ZNF432 PE=1 SV=1
          Length = 652

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
 Frame = -1

Query: 154 LYSPFEHSNTYKQEGRGAQRSKRARTHDMYRVRVGEEAGSS----DDLRDHPRV 5
           LYS  + S + K     +Q SK  RTH++ +  V  E G +      L DH RV
Sbjct: 173 LYSAAKFSVSTKANSTKSQVSKHQRTHEIEKNHVCSECGKAFVKKSQLTDHERV 226


>sp|P19524|MYO2_YEAST Myosin-2 OS=Saccharomyces cerevisiae GN=MYO2
           PE=1 SV=1
          Length = 1574

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -2

Query: 171 YNILAYFIHLSNIRILTNRKEGELSAQSEHVLMIC 67
           + ILA  +H+ NI I   R +  LSA   ++ + C
Sbjct: 335 FKILAALLHIGNIEIKKTRNDASLSADEPNLKLAC 369


>sp|Q875X3|MYO2A_SACCA Myosin-2A OS=Saccharomyces castellii GN=MYO2A
           PE=3 SV=2
          Length = 1567

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = -2

Query: 183 KQATYNILAYFIHLSNIRILTNRKEGELSAQSEHVLMIC 67
           +Q  + ILA  +H+ NI I   R +  LS+   ++ + C
Sbjct: 334 QQHIFKILAALLHIGNIEIKKTRNDSSLSSDEPNLKIAC 372
tr_hit_id Q4DYB4
Definition tr|Q4DYB4|Q4DYB4_TRYCR Putative uncharacterized protein OS=Trypanosoma cruzi
Align length 61
Score (bit) 35.0
E-value 1.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944006|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_K22, 5'
         (250 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4DYB4|Q4DYB4_TRYCR Putative uncharacterized protein OS=Trypa...    35   1.9  
tr|Q2TLS1|Q2TLS1_GINBI Dehydrin OS=Ginkgo biloba PE=2 SV=1             33   5.5  
tr|Q4XZA8|Q4XZA8_PLACH Putative uncharacterized protein OS=Plasm...    33   5.5  
tr|Q6DEM1|Q6DEM1_DANRE Snrp70 protein (Fragment) OS=Danio rerio ...    33   7.2  
tr|Q1LBL2|Q1LBL2_RALME Carbonic anhydrase OS=Ralstonia metallidu...    33   9.4  

>tr|Q4DYB4|Q4DYB4_TRYCR Putative uncharacterized protein
           OS=Trypanosoma cruzi GN=Tc00.1047053511817.130 PE=4 SV=1
          Length = 418

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = -1

Query: 187 SKTGNLQHISLLYSPFEHSNTYKQEGRGAQRSKRARTHDMYRVRVGEEAGSSDDLRDHPR 8
           +KT N++  S +Y           E R  QRS   + +  Y   + E  G +D L DHP 
Sbjct: 29  AKTDNIESSSSVYDVAAREARANHEERKRQRSPHDKENTAYNPTINERNGPADMLSDHPS 88

Query: 7   V 5
           V
Sbjct: 89  V 89


>tr|Q2TLS1|Q2TLS1_GINBI Dehydrin OS=Ginkgo biloba PE=2 SV=1
          Length = 163

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 22/67 (32%), Positives = 32/67 (47%)
 Frame = -1

Query: 217 HITLGKMTKISKTGNLQHISLLYSPFEHSNTYKQEGRGAQRSKRARTHDMYRVRVGEEAG 38
           H  LGK+ +  KT      S   S  E     K+EG G ++ K  +   M RV  G+E G
Sbjct: 55  HGLLGKLHQGDKTSQGDKTSSGSSSEEDEGGEKKEGGGRRKKKGMKEKIMERVGGGKEEG 114

Query: 37  SSDDLRD 17
            S+ ++D
Sbjct: 115 KSEGMQD 121


>tr|Q4XZA8|Q4XZA8_PLACH Putative uncharacterized protein
           OS=Plasmodium chabaudi GN=PC000501.02.0 PE=4 SV=1
          Length = 1875

 Score = 33.5 bits (75), Expect = 5.5
 Identities = 21/85 (24%), Positives = 38/85 (44%), Gaps = 11/85 (12%)
 Frame = -1

Query: 226 LKGHITLGKMTKISKT--GNLQHISLLYSPFEHSNTY---------KQEGRGAQRSKRAR 80
           L  HI+   ++K+SKT   N + I +LY  F +  TY         K+EG          
Sbjct: 457 LYAHISFSDISKVSKTFYDNFEKIEILYFNFNNDKTYKKIYENIKKKKEGLRCDDLSENN 516

Query: 79  THDMYRVRVGEEAGSSDDLRDHPRV 5
           T  M  +++  ++G+    R+  ++
Sbjct: 517 TSKMNIIKLSHDSGAKKSEREFTKI 541


>tr|Q6DEM1|Q6DEM1_DANRE Snrp70 protein (Fragment) OS=Danio rerio
           GN=snrnp70 PE=2 SV=1
          Length = 306

 Score = 33.1 bits (74), Expect = 7.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = -1

Query: 121 KQEGRGAQRSKRARTHDMYRVRVGEEAGSSDDLRDHPRVR 2
           ++  R  +R +R R+H+  R   G+EAG S   R+  R R
Sbjct: 251 RRRSRSRERRRRTRSHERERAAAGDEAGGSSRRRERERER 290


>tr|Q1LBL2|Q1LBL2_RALME Carbonic anhydrase OS=Ralstonia
           metallidurans (strain CH34 / ATCC 43123 / DSM 2839)
           GN=Rmet_5605 PE=3 SV=1
          Length = 216

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 1/73 (1%)
 Frame = -1

Query: 220 GHITLGKMTKISKTGNLQHISLLYSPFEHSNTYKQEG-RGAQRSKRARTHDMYRVRVGEE 44
           GH   G MT ++    L H+  +    EH++  ++        S RAR  DM R  V E+
Sbjct: 97  GHSDCGAMTAVATCQCLDHMPAVEEWLEHASGARRISLTRPHASDRARVDDMVRENVIEQ 156

Query: 43  AGSSDDLRDHPRV 5
               D LR HP V
Sbjct: 157 L---DHLRTHPSV 166