DK944010
Clone id YMU02A01NGRL0004_L05
Library
Length 457
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_L05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
CATTCAAGGGGGTTGCTCTACAGGCTCAGGTGGCGAGGACGTGGCAGCAAGAGCTTTTTC
ATGCGTTGTTCTGCTCGTTTAATGCCGCAGGCGGGCTTCTCAAGGTCGTTGGAGGCGATC
GTGCAGGCTGAGGTTATGAGCACTGATTGTGTTGCTCTTCGTGGTTCAGTACACGTGCTG
AATGGAGCACGAGACATGTAATTTCCATGTACTTATTGTAGCCTATATGACAGGCCAGAA
AGGGCAGAAAAATGCTTTGTAATAGGTTCTTGTTTCGGGTGGTTATCATTATATTGTGTC
ATGGCAGCAAGTATGAGGATTTGTTTTGATGTATGAGCTTTTGAGCTACATTATCTAGTG
GAAGATTCTTTGTCTGTCCTGCTTTGTACAAGCTTTTGAGCTACATTATCTAGTGGAAGA
TTCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6IR37
Definition sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus musculus
Align length 26
Score (bit) 32.3
E-value 0.82
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944010|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L05, 5'
(427 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=M... 32 0.82
sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein... 30 3.1
sp|Q9UKN1|MUC12_HUMAN Mucin-12 OS=Homo sapiens GN=MUC12 PE=1 SV=2 30 5.2
sp|Q6T4R5|NHS_HUMAN Nance-Horan syndrome protein OS=Homo sapiens... 29 7.0
sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus ... 29 8.8
sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus m... 29 8.8
sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo ... 29 8.8

>sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus
musculus GN=Zdhhc24 PE=2 SV=2
Length = 284

Score = 32.3 bits (72), Expect = 0.82
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1

Query: 238 LACHIGYNKYMEITCLVLHSARVLNH 161
L C +G++ Y CL+LHSA VL H
Sbjct: 127 LGCCVGFHNYRPFLCLLLHSAGVLLH 152


>sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein
tatB homolog OS=Pseudomonas stutzeri (strain A1501)
GN=tatB PE=3 SV=1
Length = 139

Score = 30.4 bits (67), Expect = 3.1
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = -1

Query: 187 LHSARVLNHEEQHNQCS*PQPARSPPTTLRSPPA 86
LH+ R+L+ E + Q P PA +P T SPP+
Sbjct: 63 LHNERILDLEREMKQSIMPPPASNPAATPPSPPS 96


>sp|Q9UKN1|MUC12_HUMAN Mucin-12 OS=Homo sapiens GN=MUC12 PE=1 SV=2
Length = 5478

Score = 29.6 bits (65), Expect = 5.2
Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
Frame = -3

Query: 386 QSRTDKESSTR*CSSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLSYRLQ*VH 207
+SRT S+T SS T+ ++ T Y+ + T HF S S R +
Sbjct: 1939 ESRTSHSSTTHTISSPPSTTSALV--EEPTSYHSS--PGSTATTHFPDSSTTSGRSEEST 1994

Query: 206 GNYMSRAPFSTCTEPRRATQSVLITSACT--IASNDLEKPA 90
++ S+ T P R+T SVL+ + T I+S +E A
Sbjct: 1995 ASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSMETTA 2035


>sp|Q6T4R5|NHS_HUMAN Nance-Horan syndrome protein OS=Homo sapiens
GN=NHS PE=1 SV=1
Length = 1630

Score = 29.3 bits (64), Expect = 7.0
Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
Frame = -1

Query: 379 GQTKNLPLDNVAQKLIHQNKSSYLLP*HNIMITTRNK-----NLLQSIFLPFLACHIGYN 215
GQ P+ N+ L Q S LP + T K ++ S +P +G++
Sbjct: 298 GQRPKNPIHNIPSTLDKQTNWSKALP----LPTPEEKMKQDAQVISSCIIPINVTGVGFD 353

Query: 214 KYMEITCLVLHSARVLNHEEQ 152
+ I C ++HS VL +
Sbjct: 354 REASIRCSLVHSQSVLQRRRK 374


>sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus
norvegicus GN=Git1 PE=1 SV=1
Length = 770

Score = 28.9 bits (63), Expect = 8.8
Identities = 29/118 (24%), Positives = 42/118 (35%)
Frame = -3

Query: 407 NVAQKLVQSRTDKESSTR*CSSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLS 228
N+ + L ++ K S CS K H L + M P EP+ L+ +
Sbjct: 664 NIQELLRAAQEFKHDSFVPCSEKIH-----LAVTEMASLFPKRPALEPVRSSLRLLNASA 718

Query: 227 YRLQ*VHGNYMSRAPFSTCTEPRRATQSVLITSACTIASNDLEKPACGIKRAEQRMKK 54
YRLQ S + EP L+T + D+ K A + R KK
Sbjct: 719 YRLQ-------SECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTREKK 769


>sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus
musculus GN=Git1 PE=1 SV=1
Length = 770

Score = 28.9 bits (63), Expect = 8.8
Identities = 29/118 (24%), Positives = 42/118 (35%)
Frame = -3

Query: 407 NVAQKLVQSRTDKESSTR*CSSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLS 228
N+ + L ++ K S CS K H L + M P EP+ L+ +
Sbjct: 664 NIQELLRAAQEFKHDSFVPCSEKIH-----LAVTEMASLFPKRPALEPVRSSLRLLNASA 718

Query: 227 YRLQ*VHGNYMSRAPFSTCTEPRRATQSVLITSACTIASNDLEKPACGIKRAEQRMKK 54
YRLQ S + EP L+T + D+ K A + R KK
Sbjct: 719 YRLQ-------SECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTREKK 769


>sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo
sapiens GN=GIT1 PE=1 SV=2
Length = 761

Score = 28.9 bits (63), Expect = 8.8
Identities = 29/118 (24%), Positives = 42/118 (35%)
Frame = -3

Query: 407 NVAQKLVQSRTDKESSTR*CSSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLS 228
N+ + L ++ K S CS K H L + M P EP+ L+ +
Sbjct: 655 NIQELLRAAQEFKHDSFVPCSEKIH-----LAVTEMASLFPKRPALEPVRSSLRLLNASA 709

Query: 227 YRLQ*VHGNYMSRAPFSTCTEPRRATQSVLITSACTIASNDLEKPACGIKRAEQRMKK 54
YRLQ S + EP L+T + D+ K A + R KK
Sbjct: 710 YRLQ-------SECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTREKK 760


tr_hit_id B6PLH6
Definition tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 60
Score (bit) 36.2
E-value 0.82
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944010|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L05, 5'
(427 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branc... 36 0.82
tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein OS=Branc... 35 1.9
tr|Q91810|Q91810_XENLA Proline rich protein OS=Xenopus laevis GN... 33 9.4
tr|Q640C2|Q640C2_XENLA LOC397922 protein OS=Xenopus laevis GN=LO... 33 9.4
tr|A2BEM9|A2BEM9_DANRE Novel protein containing a DHHC zinc fing... 33 9.4

>tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_108391 PE=4 SV=1
Length = 1131

Score = 36.2 bits (82), Expect = 0.82
Identities = 20/60 (33%), Positives = 31/60 (51%)
Frame = -3

Query: 347 SSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLSYRLQ*VHGNYMSRAPFSTCT 168
S ++ +Q+ ++A + QY+ HP+ P+ + F LS L NY SRAP T T
Sbjct: 91 SFRSFRLEQVRLVACVCQYSSEHPQALPMDQLFQGLSQLPKTETTDISNYFSRAPEETTT 150


>tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein
OS=Branchiostoma floridae GN=BRAFLDRAFT_116539 PE=4 SV=1
Length = 370

Score = 35.0 bits (79), Expect = 1.9
Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
Frame = -1

Query: 232 CHIGYNKYMEITCLVLHSARVLNHEEQHNQ------CS*PQPARSPPTTLRSPPAALNEQ 71
C G +K+ E C + S +N + ++N C +P P L SPPA N Q
Sbjct: 106 CDCGNSKFPENKCKLDPSKAPVNTDNKYNHNFHGLYCICDRPYPDPDDEL-SPPAFFNPQ 164

Query: 70 NNA*KSSCCHV 38
NN +CC++
Sbjct: 165 NNTKSYTCCNL 175


>tr|Q91810|Q91810_XENLA Proline rich protein OS=Xenopus laevis
GN=wipf2 PE=2 SV=1
Length = 379

Score = 32.7 bits (73), Expect = 9.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1

Query: 151 HNQCS*PQPARSPPTTLRSPPAALNE 74
H+Q P P R PPT+L PP+ +NE
Sbjct: 241 HSQPPPPPPYRQPPTSLNGPPSPINE 266


>tr|Q640C2|Q640C2_XENLA LOC397922 protein OS=Xenopus laevis
GN=LOC397922 PE=2 SV=1
Length = 431

Score = 32.7 bits (73), Expect = 9.4
Identities = 13/26 (50%), Positives = 17/26 (65%)
Frame = -1

Query: 151 HNQCS*PQPARSPPTTLRSPPAALNE 74
H+Q P P R PPT+L PP+ +NE
Sbjct: 241 HSQPPPPPPYRQPPTSLNGPPSPINE 266


>tr|A2BEM9|A2BEM9_DANRE Novel protein containing a DHHC zinc finger
domain (Fragment) OS=Danio rerio GN=CH211-137I24.2-001
PE=4 SV=1
Length = 362

Score = 32.7 bits (73), Expect = 9.4
Identities = 18/48 (37%), Positives = 24/48 (50%)
Frame = +1

Query: 157 LRGSVHVLNGARDM*FPCTYCSLYDRPERAEKCFVIGSCFGWLSLYCV 300
LR V L G +D+ C C L RP RA C + G+C + +CV
Sbjct: 169 LRNGVSHLKGEKDVKKKCPVCQLV-RPPRAGHCRICGACVLRMDHHCV 215