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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944010
Clone id YMU02A01NGRL0004_L05
Library
Length 457
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_L05. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CATTCAAGGGGGTTGCTCTACAGGCTCAGGTGGCGAGGACGTGGCAGCAAGAGCTTTTTC
ATGCGTTGTTCTGCTCGTTTAATGCCGCAGGCGGGCTTCTCAAGGTCGTTGGAGGCGATC
GTGCAGGCTGAGGTTATGAGCACTGATTGTGTTGCTCTTCGTGGTTCAGTACACGTGCTG
AATGGAGCACGAGACATGTAATTTCCATGTACTTATTGTAGCCTATATGACAGGCCAGAA
AGGGCAGAAAAATGCTTTGTAATAGGTTCTTGTTTCGGGTGGTTATCATTATATTGTGTC
ATGGCAGCAAGTATGAGGATTTGTTTTGATGTATGAGCTTTTGAGCTACATTATCTAGTG
GAAGATTCTTTGTCTGTCCTGCTTTGTACAAGCTTTTGAGCTACATTATCTAGTGGAAGA
TTCTCTCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6IR37
Definition sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus musculus
Align length 26
Score (bit) 32.3
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944010|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L05, 5'
         (427 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=M...    32   0.82 
sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein...    30   3.1  
sp|Q9UKN1|MUC12_HUMAN Mucin-12 OS=Homo sapiens GN=MUC12 PE=1 SV=2      30   5.2  
sp|Q6T4R5|NHS_HUMAN Nance-Horan syndrome protein OS=Homo sapiens...    29   7.0  
sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus ...    29   8.8  
sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus m...    29   8.8  
sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo ...    29   8.8  

>sp|Q6IR37|ZDH24_MOUSE Probable palmitoyltransferase ZDHHC24 OS=Mus
           musculus GN=Zdhhc24 PE=2 SV=2
          Length = 284

 Score = 32.3 bits (72), Expect = 0.82
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 238 LACHIGYNKYMEITCLVLHSARVLNH 161
           L C +G++ Y    CL+LHSA VL H
Sbjct: 127 LGCCVGFHNYRPFLCLLLHSAGVLLH 152


>sp|A4VGD9|TATB_PSEU5 Sec-independent protein translocase protein
           tatB homolog OS=Pseudomonas stutzeri (strain A1501)
           GN=tatB PE=3 SV=1
          Length = 139

 Score = 30.4 bits (67), Expect = 3.1
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = -1

Query: 187 LHSARVLNHEEQHNQCS*PQPARSPPTTLRSPPA 86
           LH+ R+L+ E +  Q   P PA +P  T  SPP+
Sbjct: 63  LHNERILDLEREMKQSIMPPPASNPAATPPSPPS 96


>sp|Q9UKN1|MUC12_HUMAN Mucin-12 OS=Homo sapiens GN=MUC12 PE=1 SV=2
          Length = 5478

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 29/101 (28%), Positives = 45/101 (44%), Gaps = 2/101 (1%)
 Frame = -3

Query: 386  QSRTDKESSTR*CSSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLSYRLQ*VH 207
            +SRT   S+T   SS   T+  ++     T Y+ +       T HF   S  S R +   
Sbjct: 1939 ESRTSHSSTTHTISSPPSTTSALV--EEPTSYHSS--PGSTATTHFPDSSTTSGRSEEST 1994

Query: 206  GNYMSRAPFSTCTEPRRATQSVLITSACT--IASNDLEKPA 90
             ++ S+    T   P R+T SVL+  + T  I+S  +E  A
Sbjct: 1995 ASHSSQDATGTIVLPARSTTSVLLGESTTSPISSGSMETTA 2035


>sp|Q6T4R5|NHS_HUMAN Nance-Horan syndrome protein OS=Homo sapiens
           GN=NHS PE=1 SV=1
          Length = 1630

 Score = 29.3 bits (64), Expect = 7.0
 Identities = 20/81 (24%), Positives = 33/81 (40%), Gaps = 5/81 (6%)
 Frame = -1

Query: 379 GQTKNLPLDNVAQKLIHQNKSSYLLP*HNIMITTRNK-----NLLQSIFLPFLACHIGYN 215
           GQ    P+ N+   L  Q   S  LP    + T   K      ++ S  +P     +G++
Sbjct: 298 GQRPKNPIHNIPSTLDKQTNWSKALP----LPTPEEKMKQDAQVISSCIIPINVTGVGFD 353

Query: 214 KYMEITCLVLHSARVLNHEEQ 152
           +   I C ++HS  VL    +
Sbjct: 354 REASIRCSLVHSQSVLQRRRK 374


>sp|Q9Z272|GIT1_RAT ARF GTPase-activating protein GIT1 OS=Rattus
           norvegicus GN=Git1 PE=1 SV=1
          Length = 770

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 29/118 (24%), Positives = 42/118 (35%)
 Frame = -3

Query: 407 NVAQKLVQSRTDKESSTR*CSSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLS 228
           N+ + L  ++  K  S   CS K H     L +  M       P  EP+      L+  +
Sbjct: 664 NIQELLRAAQEFKHDSFVPCSEKIH-----LAVTEMASLFPKRPALEPVRSSLRLLNASA 718

Query: 227 YRLQ*VHGNYMSRAPFSTCTEPRRATQSVLITSACTIASNDLEKPACGIKRAEQRMKK 54
           YRLQ       S    +   EP       L+T      + D+ K A  +     R KK
Sbjct: 719 YRLQ-------SECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTREKK 769


>sp|Q68FF6|GIT1_MOUSE ARF GTPase-activating protein GIT1 OS=Mus
           musculus GN=Git1 PE=1 SV=1
          Length = 770

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 29/118 (24%), Positives = 42/118 (35%)
 Frame = -3

Query: 407 NVAQKLVQSRTDKESSTR*CSSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLS 228
           N+ + L  ++  K  S   CS K H     L +  M       P  EP+      L+  +
Sbjct: 664 NIQELLRAAQEFKHDSFVPCSEKIH-----LAVTEMASLFPKRPALEPVRSSLRLLNASA 718

Query: 227 YRLQ*VHGNYMSRAPFSTCTEPRRATQSVLITSACTIASNDLEKPACGIKRAEQRMKK 54
           YRLQ       S    +   EP       L+T      + D+ K A  +     R KK
Sbjct: 719 YRLQ-------SECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTREKK 769


>sp|Q9Y2X7|GIT1_HUMAN ARF GTPase-activating protein GIT1 OS=Homo
           sapiens GN=GIT1 PE=1 SV=2
          Length = 761

 Score = 28.9 bits (63), Expect = 8.8
 Identities = 29/118 (24%), Positives = 42/118 (35%)
 Frame = -3

Query: 407 NVAQKLVQSRTDKESSTR*CSSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLS 228
           N+ + L  ++  K  S   CS K H     L +  M       P  EP+      L+  +
Sbjct: 655 NIQELLRAAQEFKHDSFVPCSEKIH-----LAVTEMASLFPKRPALEPVRSSLRLLNASA 709

Query: 227 YRLQ*VHGNYMSRAPFSTCTEPRRATQSVLITSACTIASNDLEKPACGIKRAEQRMKK 54
           YRLQ       S    +   EP       L+T      + D+ K A  +     R KK
Sbjct: 710 YRLQ-------SECRKTVPPEPGAPVDFQLLTQQVIQCAYDIAKAAKQLVTITTREKK 760
tr_hit_id B6PLH6
Definition tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae
Align length 60
Score (bit) 36.2
E-value 0.82
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944010|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L05, 5'
         (427 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein OS=Branc...    36   0.82 
tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein OS=Branc...    35   1.9  
tr|Q91810|Q91810_XENLA Proline rich protein OS=Xenopus laevis GN...    33   9.4  
tr|Q640C2|Q640C2_XENLA LOC397922 protein OS=Xenopus laevis GN=LO...    33   9.4  
tr|A2BEM9|A2BEM9_DANRE Novel protein containing a DHHC zinc fing...    33   9.4  

>tr|B6PLH6|B6PLH6_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_108391 PE=4 SV=1
          Length = 1131

 Score = 36.2 bits (82), Expect = 0.82
 Identities = 20/60 (33%), Positives = 31/60 (51%)
 Frame = -3

Query: 347 SSKAHTSKQILILAAMTQYNDNHPKQEPITKHFSALSGLSYRLQ*VHGNYMSRAPFSTCT 168
           S ++   +Q+ ++A + QY+  HP+  P+ + F  LS L         NY SRAP  T T
Sbjct: 91  SFRSFRLEQVRLVACVCQYSSEHPQALPMDQLFQGLSQLPKTETTDISNYFSRAPEETTT 150


>tr|B6PLA8|B6PLA8_BRAFL Putative uncharacterized protein
           OS=Branchiostoma floridae GN=BRAFLDRAFT_116539 PE=4 SV=1
          Length = 370

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 22/71 (30%), Positives = 33/71 (46%), Gaps = 6/71 (8%)
 Frame = -1

Query: 232 CHIGYNKYMEITCLVLHSARVLNHEEQHNQ------CS*PQPARSPPTTLRSPPAALNEQ 71
           C  G +K+ E  C +  S   +N + ++N       C   +P   P   L SPPA  N Q
Sbjct: 106 CDCGNSKFPENKCKLDPSKAPVNTDNKYNHNFHGLYCICDRPYPDPDDEL-SPPAFFNPQ 164

Query: 70  NNA*KSSCCHV 38
           NN    +CC++
Sbjct: 165 NNTKSYTCCNL 175


>tr|Q91810|Q91810_XENLA Proline rich protein OS=Xenopus laevis
           GN=wipf2 PE=2 SV=1
          Length = 379

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 151 HNQCS*PQPARSPPTTLRSPPAALNE 74
           H+Q   P P R PPT+L  PP+ +NE
Sbjct: 241 HSQPPPPPPYRQPPTSLNGPPSPINE 266


>tr|Q640C2|Q640C2_XENLA LOC397922 protein OS=Xenopus laevis
           GN=LOC397922 PE=2 SV=1
          Length = 431

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = -1

Query: 151 HNQCS*PQPARSPPTTLRSPPAALNE 74
           H+Q   P P R PPT+L  PP+ +NE
Sbjct: 241 HSQPPPPPPYRQPPTSLNGPPSPINE 266


>tr|A2BEM9|A2BEM9_DANRE Novel protein containing a DHHC zinc finger
           domain (Fragment) OS=Danio rerio GN=CH211-137I24.2-001
           PE=4 SV=1
          Length = 362

 Score = 32.7 bits (73), Expect = 9.4
 Identities = 18/48 (37%), Positives = 24/48 (50%)
 Frame = +1

Query: 157 LRGSVHVLNGARDM*FPCTYCSLYDRPERAEKCFVIGSCFGWLSLYCV 300
           LR  V  L G +D+   C  C L  RP RA  C + G+C   +  +CV
Sbjct: 169 LRNGVSHLKGEKDVKKKCPVCQLV-RPPRAGHCRICGACVLRMDHHCV 215