DK944013 |
Clone id |
YMU02A01NGRL0004_L08 |
Library |
YMU02 |
Length |
471 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_L08. 5' end sequence. |
Accession |
DK944013 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1376Contig1 |
Sequence |
GAAGGTTAGTGGTGGAGATGCTCGATTTCAAGTGTTGCTGTCAATGCAAACCCCTCACAA TCTTTTGCTTGTCATGAATCAGGATGTGGCATGTCATCATATCGCGAAGGGTTATGATCG TTCTTTATTGCCACGGGTACTCATGGCTCACGGCGGTCAAGCGGGGCGTGCGAAAGATGC ATTAGAAGAGTTCACTCAATGTTTCAATCAAGAGAAGCTGCTGAAGAAAGGAGCTGAAGT TTGTCTGGTATGGAGGCCTGATGATACGCTTGTTGTCATAATTGACTCAAGAGTTTGTGG AGTGATTCAATCTTCAATACTTTGTCAGGCTTTATTTGACATGTATTTAGGACCGAACTC AATATTCAAAAGGTACCGCAGTATGTCATTCACTTTCCATAACAATCCTGTCACATAAGG GTGGGAATTAATGGAAGAGATAGTCATAATAGTGCTTTTGAAGTTCATTTT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q9P2K9 |
Definition |
sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens |
Align length |
55 |
Score (bit) |
32.3 |
E-value |
1.1 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944013|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_L08, 5' (471 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Hom... 32 1.1 sp|P04760|ACHG_MOUSE Acetylcholine receptor subunit gamma OS=Mus... 32 1.4 sp|P07510|ACHG_HUMAN Acetylcholine receptor subunit gamma OS=Hom... 32 1.4 sp|P13536|ACHG_BOVIN Acetylcholine receptor subunit gamma OS=Bos... 31 2.4 sp|Q9SAR0|1A16_ARATH 1-aminocyclopropane-1-carboxylate synthase ... 30 5.4 sp|P0A4Y8|ARGR_MYCTU Arginine repressor OS=Mycobacterium tubercu... 30 6.9 sp|A5U314|ARGR_MYCTA Arginine repressor OS=Mycobacterium tubercu... 30 6.9 sp|A1KJ74|ARGR_MYCBP Arginine repressor OS=Mycobacterium bovis (... 30 6.9 sp|P0A4Y9|ARGR_MYCBO Arginine repressor OS=Mycobacterium bovis G... 30 6.9 sp|P27486|1A1C_DIACA 1-aminocyclopropane-1-carboxylate synthase ... 30 7.1 sp|P18916|ACHG_RAT Acetylcholine receptor subunit gamma OS=Rattu... 29 9.1 sp|P18485|1A12_SOLLC 1-aminocyclopropane-1-carboxylate synthase ... 29 9.3 sp|Q06429|1A11_ARATH 1-aminocyclopropane-1-carboxylate synthase-... 29 9.3
>sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens GN=PTCHD2 PE=2 SV=2 Length = 1392
Score = 32.3 bits (72), Expect = 1.1 Identities = 14/55 (25%), Positives = 30/55 (54%) Frame = +2
Query: 167 RAKDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQA 331 R + L++ Q + +L++G + C W+ +V + S +CG++ S ++C A Sbjct: 1142 RWESFLQQQLQALPEGSVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLLICVA 1196
>sp|P04760|ACHG_MOUSE Acetylcholine receptor subunit gamma OS=Mus musculus GN=Chrng PE=2 SV=1 Length = 519
Score = 32.0 bits (71), Expect = 1.4 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +2
Query: 245 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFD----MYLGPNSIFKRYRSMSFTF 397 +VWRPD +++++ V GV + ++ C L +Y P +IF+ S+S T+ Sbjct: 106 MVWRPD----IVLENNVDGVFEVALYCNVLVSPDGCIYWLPPAIFRSSCSISVTY 156
>sp|P07510|ACHG_HUMAN Acetylcholine receptor subunit gamma OS=Homo sapiens GN=CHRNG PE=1 SV=2 Length = 517
Score = 32.0 bits (71), Expect = 1.4 Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%) Frame = +2
Query: 245 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFD----MYLGPNSIFKRYRSMSFTF 397 +VWRPD +++++ V GV + ++ C L +Y P +IF+ S+S T+ Sbjct: 106 MVWRPD----IVLENNVDGVFEVALYCNVLVSPDGCIYWLPPAIFRSACSISVTY 156
>sp|P13536|ACHG_BOVIN Acetylcholine receptor subunit gamma OS=Bos taurus GN=CHRNG PE=2 SV=1 Length = 519
Score = 31.2 bits (69), Expect = 2.4 Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%) Frame = +2
Query: 245 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFD----MYLGPNSIFKRYRSMSFTF 397 +VWRPD +++++ V GV + ++ C L +Y P +IF+ +S TF Sbjct: 106 MVWRPD----IVLENNVDGVFEVALYCNVLVSPDGCVYWLPPAIFRSSCPVSVTF 156
>sp|Q9SAR0|1A16_ARATH 1-aminocyclopropane-1-carboxylate synthase 6 OS=Arabidopsis thaliana GN=ACS6 PE=1 SV=2 Length = 495
Score = 30.0 bits (66), Expect = 5.4 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1
Query: 13 WRCSISSVAVNANPSQSFACHESG 84 WR + V +N +P SF CHE G Sbjct: 388 WRVIVHQVKLNVSPGGSFHCHEPG 411
>sp|P0A4Y8|ARGR_MYCTU Arginine repressor OS=Mycobacterium tuberculosis GN=argR PE=1 SV=1 Length = 170
Score = 29.6 bits (65), Expect = 6.9 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +2
Query: 5 VSGGDARF-----QVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVL 142 VSGG R ++L+S NL ++ A H++A DR+ LP+V+ Sbjct: 90 VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVV 140
>sp|A5U314|ARGR_MYCTA Arginine repressor OS=Mycobacterium tuberculosis (strain ATCC 25177 / H37Ra) GN=argR PE=3 SV=1 Length = 170
Score = 29.6 bits (65), Expect = 6.9 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +2
Query: 5 VSGGDARF-----QVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVL 142 VSGG R ++L+S NL ++ A H++A DR+ LP+V+ Sbjct: 90 VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVV 140
>sp|A1KJ74|ARGR_MYCBP Arginine repressor OS=Mycobacterium bovis (strain BCG / Pasteur 1173P2) GN=argR PE=3 SV=1 Length = 170
Score = 29.6 bits (65), Expect = 6.9 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +2
Query: 5 VSGGDARF-----QVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVL 142 VSGG R ++L+S NL ++ A H++A DR+ LP+V+ Sbjct: 90 VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVV 140
>sp|P0A4Y9|ARGR_MYCBO Arginine repressor OS=Mycobacterium bovis GN=argR PE=3 SV=1 Length = 170
Score = 29.6 bits (65), Expect = 6.9 Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = +2
Query: 5 VSGGDARF-----QVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVL 142 VSGG R ++L+S NL ++ A H++A DR+ LP+V+ Sbjct: 90 VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVV 140
>sp|P27486|1A1C_DIACA 1-aminocyclopropane-1-carboxylate synthase OS=Dianthus caryophyllus GN=ACS2 PE=2 SV=1 Length = 517
Score = 29.6 bits (65), Expect = 7.1 Identities = 11/24 (45%), Positives = 14/24 (58%) Frame = +1
Query: 13 WRCSISSVAVNANPSQSFACHESG 84 WR I+ V +N +P SF C E G Sbjct: 385 WRVIINEVKINVSPGSSFLCSEPG 408
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RME8 |
Definition |
tr|A9RME8|A9RME8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
114 |
Score (bit) |
150.0 |
E-value |
4.0e-35 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944013|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_L08, 5' (471 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RME8|A9RME8_PHYPA Predicted protein OS=Physcomitrella paten... 150 4e-35 tr|A9NXH6|A9NXH6_PICSI Putative uncharacterized protein OS=Picea... 50 4e-05 tr|A9SYP7|A9SYP7_PHYPA Predicted protein (Fragment) OS=Physcomit... 49 2e-04 tr|B6TFR7|B6TFR7_MAIZE Chalcone isomerase OS=Zea mays PE=2 SV=1 47 4e-04 tr|B6SSF1|B6SSF1_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.002 tr|B4F9M5|B4F9M5_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.002 tr|A9TWY8|A9TWY8_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.002 tr|A9SD96|A9SD96_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.003 tr|A7PUA6|A7PUA6_VITVI Chromosome chr7 scaffold_31, whole genome... 44 0.005 tr|A5AE11|A5AE11_VITVI Putative uncharacterized protein OS=Vitis... 44 0.005 tr|Q0D5A7|Q0D5A7_ORYSJ Os07g0571600 protein OS=Oryza sativa subs... 43 0.009 tr|A3BLC6|A3BLC6_ORYSJ Putative uncharacterized protein OS=Oryza... 43 0.009 tr|A2YMU6|A2YMU6_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.009 tr|Q69SP9|Q69SP9_ORYSJ Os06g0203600 protein OS=Oryza sativa subs... 42 0.012 tr|A3B9E9|A3B9E9_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.012 tr|A2YAF8|A2YAF8_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.012 tr|Q6K7H0|Q6K7H0_ORYSJ Os02g0778500 protein OS=Oryza sativa subs... 41 0.026 tr|B8AJH7|B8AJH7_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.026 tr|A3ABX6|A3ABX6_ORYSJ Putative uncharacterized protein OS=Oryza... 41 0.026 tr|Q9M1X2|Q9M1X2_ARATH Putative uncharacterized protein F16M2_20... 41 0.034 tr|B4FY11|B4FY11_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.034 tr|B4FI80|B4FI80_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.034 tr|A7P4U7|A7P4U7_VITVI Chromosome chr4 scaffold_6, whole genome ... 40 0.076 tr|B8C2M0|B8C2M0_THAPS Predicted protein OS=Thalassiosira pseudo... 38 0.29 tr|B6SV98|B6SV98_MAIZE Putative uncharacterized protein OS=Zea m... 37 0.50 tr|A8HZA4|A8HZA4_CHLRE Predicted protein OS=Chlamydomonas reinha... 37 0.50 tr|Q8LFP0|Q8LFP0_ARATH Chalcone isomerase, putative OS=Arabidops... 37 0.65 tr|B7G763|B7G763_PHATR Predicted protein OS=Phaeodactylum tricor... 37 0.65 tr|Q9C8L2|Q9C8L2_ARATH Chalcone isomerase, putative; 94270-95700... 36 0.84 tr|A7P2A5|A7P2A5_VITVI Chromosome chr19 scaffold_4, whole genome... 36 0.84
>tr|A9RME8|A9RME8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_159965 PE=4 SV=1 Length = 224
Score = 150 bits (378), Expect = 4e-35 Identities = 71/114 (62%), Positives = 94/114 (82%), Gaps = 1/114 (0%) Frame = +2
Query: 62 LLLVMNQDVACHHIAKGYDRSLLPRVLMAHGG-QAGRAKDALEEFTQCFNQEKLLKKGAE 238 L+LVM++DVA HHIAKG+D+SLLPR+ A G + G KDAL +FT+CFN+EK LKKG+E Sbjct: 104 LVLVMDKDVAGHHIAKGFDKSLLPRIRKAQAGSKRGSGKDALRDFTKCFNREKTLKKGSE 163
Query: 239 VCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNSIFKRYRSMSFTFH 400 V L+W PD+ LVV D+++ VI+S ILC+A+FDMYLG +SIF++YR+MSFTFH Sbjct: 164 VALLWTPDNKLVVYFDNQMRAVIESPILCRAVFDMYLGEDSIFRKYRNMSFTFH 217
>tr|A9NXH6|A9NXH6_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 300
Score = 50.4 bits (119), Expect = 4e-05 Identities = 27/91 (29%), Positives = 48/91 (52%) Frame = +2
Query: 101 IAKGYDRSLLPRVLMAHGGQAGRAKDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVI 280 + ++ S+ R+ G Q K+ L+ FT F + L +G ++ + P L Sbjct: 198 VRSAFEESIGSRLQKFSGSQN---KELLQRFTSQFKDDHKLPRGTKIHITRFPGHILQTK 254
Query: 281 IDSRVCGVIQSSILCQALFDMYLGPNSIFKR 373 ID + G IQS +LC++LFD+Y+G + + K+ Sbjct: 255 IDEKEVGSIQSQLLCRSLFDLYIGEDPLDKQ 285
>tr|A9SYP7|A9SYP7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_137498 PE=4 SV=1 Length = 200
Score = 48.5 bits (114), Expect = 2e-04 Identities = 24/70 (34%), Positives = 38/70 (54%) Frame = +2
Query: 176 DALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGP 355 + L+ FT F + L KG + L P + L ID G +QSS+LC++LFD+Y+G Sbjct: 121 ELLQRFTGAFTDDIKLPKGTIIDLTRLPGNVLQTKIDGTEVGSVQSSLLCRSLFDLYIGD 180
Query: 356 NSIFKRYRSM 385 + K + + Sbjct: 181 DPFDKEAKKL 190
>tr|B6TFR7|B6TFR7_MAIZE Chalcone isomerase OS=Zea mays PE=2 SV=1 Length = 274
Score = 47.4 bits (111), Expect = 4e-04 Identities = 28/87 (32%), Positives = 46/87 (52%) Frame = +2
Query: 101 IAKGYDRSLLPRVLMAHGGQAGRAKDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVI 280 + +++S+ R L GGQ K+ L+ F F E L KG+ + L + L + Sbjct: 172 VRSAFEKSVGSR-LQKFGGQD--TKELLQSFVAVFKDEYKLPKGSVIELSRESNHVLKIC 228
Query: 281 IDSRVCGVIQSSILCQALFDMYLGPNS 361 I+ G IQS +LC++L D+Y+G +S Sbjct: 229 IEGEEVGSIQSKLLCKSLLDLYIGDDS 255
>tr|B6SSF1|B6SSF1_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 425
Score = 45.1 bits (105), Expect = 0.002 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = +2
Query: 182 LEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 352 L+ F CF+++ + G ++ D L+ ID + G +QS LC+A FDMY+G Sbjct: 346 LKTFGSCFSEDIRIPAGTKIDFRQTSDGQLITEIDGKQIGTVQSKDLCRAFFDMYIG 402
>tr|B4F9M5|B4F9M5_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 425
Score = 45.1 bits (105), Expect = 0.002 Identities = 20/57 (35%), Positives = 32/57 (56%) Frame = +2
Query: 182 LEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 352 L+ F CF+++ + G ++ D L+ ID + G +QS LC+A FDMY+G Sbjct: 346 LKTFGSCFSEDIRIPAGTKIDFRQTSDGQLITEIDGKQIGTVQSKDLCRAFFDMYIG 402
>tr|A9TWY8|A9TWY8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_172454 PE=4 SV=1 Length = 463
Score = 44.7 bits (104), Expect = 0.002 Identities = 27/100 (27%), Positives = 46/100 (46%) Frame = +2
Query: 65 LLVMNQDVACHHIAKGYDRSLLPRVLMAHGGQAGRAKDALEEFTQCFNQEKLLKKGAEVC 244 L+V Q + + + SL R+ G + L+ F + + L KG+ + Sbjct: 323 LVVHYQGLKMRMVRNAFHESLRNRLSKI----GGNGDEGLQTFCSYLSDDIRLHKGSTID 378
Query: 245 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNSI 364 + W+ L + I+ R GVI S CQA FD+Y+G + + Sbjct: 379 VRWQVGGRLRIEIEGRRVGVIHSPPFCQAFFDLYIGDSPV 418
>tr|A9SD96|A9SD96_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_127780 PE=4 SV=1 Length = 217
Score = 44.3 bits (103), Expect = 0.003 Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 6/122 (4%) Frame = +2
Query: 17 DARFQVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVLMAHGGQAGRAKDALEEFT 196 +A FQ L L + + +DV D +L+PR+ + G G A AL EF Sbjct: 83 EALFQELAQAPVEKALQIKLARDVDGATFWGALDEALVPRLTASGAGADGDA--ALAEFG 140
Query: 197 QCFNQEKLLKKGAEVCLVWRPDDTL-VVIIDSRVCGV-----IQSSILCQALFDMYLGPN 358 F + + L+KG + L W TL V I +S + I+S L AL+D++LG + Sbjct: 141 NVF-KNRSLQKGYVITLTWVQPSTLRVTISESEAANLKTEASIESKALLSALYDVFLGTS 199
Query: 359 SI 364 ++ Sbjct: 200 AV 201
>tr|A7PUA6|A7PUA6_VITVI Chromosome chr7 scaffold_31, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00023722001 PE=4 SV=1 Length = 331
Score = 43.5 bits (101), Expect = 0.005 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = +2
Query: 173 KDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 352 K+ L FT F E + KG+ + L L ID + G IQS +LC+++ D+Y+G Sbjct: 250 KELLHRFTSQFKDEYKIPKGSVIDLSRERGHVLRTTIDGKEVGNIQSQLLCRSILDLYIG 309
Query: 353 PNSIFKR 373 + +R Sbjct: 310 EDPFDRR 316
>tr|A5AE11|A5AE11_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_001830 PE=4 SV=1 Length = 293
Score = 43.5 bits (101), Expect = 0.005 Identities = 22/67 (32%), Positives = 35/67 (52%) Frame = +2
Query: 173 KDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 352 K+ L FT F E + KG+ + L L ID + G IQS +LC+++ D+Y+G Sbjct: 212 KELLHRFTSQFKDEYKIPKGSVIDLSRERGHVLRTTIDGKEVGNIQSQLLCRSILDLYIG 271
Query: 353 PNSIFKR 373 + +R Sbjct: 272 EDPFDRR 278
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