DK944013
Clone id YMU02A01NGRL0004_L08
Library
Length 471
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_L08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGGTTAGTGGTGGAGATGCTCGATTTCAAGTGTTGCTGTCAATGCAAACCCCTCACAA
TCTTTTGCTTGTCATGAATCAGGATGTGGCATGTCATCATATCGCGAAGGGTTATGATCG
TTCTTTATTGCCACGGGTACTCATGGCTCACGGCGGTCAAGCGGGGCGTGCGAAAGATGC
ATTAGAAGAGTTCACTCAATGTTTCAATCAAGAGAAGCTGCTGAAGAAAGGAGCTGAAGT
TTGTCTGGTATGGAGGCCTGATGATACGCTTGTTGTCATAATTGACTCAAGAGTTTGTGG
AGTGATTCAATCTTCAATACTTTGTCAGGCTTTATTTGACATGTATTTAGGACCGAACTC
AATATTCAAAAGGTACCGCAGTATGTCATTCACTTTCCATAACAATCCTGTCACATAAGG
GTGGGAATTAATGGAAGAGATAGTCATAATAGTGCTTTTGAAGTTCATTTT
■■Homology search results ■■ -
sp_hit_id Q9P2K9
Definition sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo sapiens
Align length 55
Score (bit) 32.3
E-value 1.1
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944013|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L08, 5'
(471 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Hom... 32 1.1
sp|P04760|ACHG_MOUSE Acetylcholine receptor subunit gamma OS=Mus... 32 1.4
sp|P07510|ACHG_HUMAN Acetylcholine receptor subunit gamma OS=Hom... 32 1.4
sp|P13536|ACHG_BOVIN Acetylcholine receptor subunit gamma OS=Bos... 31 2.4
sp|Q9SAR0|1A16_ARATH 1-aminocyclopropane-1-carboxylate synthase ... 30 5.4
sp|P0A4Y8|ARGR_MYCTU Arginine repressor OS=Mycobacterium tubercu... 30 6.9
sp|A5U314|ARGR_MYCTA Arginine repressor OS=Mycobacterium tubercu... 30 6.9
sp|A1KJ74|ARGR_MYCBP Arginine repressor OS=Mycobacterium bovis (... 30 6.9
sp|P0A4Y9|ARGR_MYCBO Arginine repressor OS=Mycobacterium bovis G... 30 6.9
sp|P27486|1A1C_DIACA 1-aminocyclopropane-1-carboxylate synthase ... 30 7.1
sp|P18916|ACHG_RAT Acetylcholine receptor subunit gamma OS=Rattu... 29 9.1
sp|P18485|1A12_SOLLC 1-aminocyclopropane-1-carboxylate synthase ... 29 9.3
sp|Q06429|1A11_ARATH 1-aminocyclopropane-1-carboxylate synthase-... 29 9.3

>sp|Q9P2K9|PTHD2_HUMAN Patched domain-containing protein 2 OS=Homo
sapiens GN=PTCHD2 PE=2 SV=2
Length = 1392

Score = 32.3 bits (72), Expect = 1.1
Identities = 14/55 (25%), Positives = 30/55 (54%)
Frame = +2

Query: 167 RAKDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQA 331
R + L++ Q + +L++G + C W+ +V + S +CG++ S ++C A
Sbjct: 1142 RWESFLQQQLQALPEGSVLRRGFQTCEHWKQIFMEIVGVQSALCGLVLSLLICVA 1196


>sp|P04760|ACHG_MOUSE Acetylcholine receptor subunit gamma OS=Mus
musculus GN=Chrng PE=2 SV=1
Length = 519

Score = 32.0 bits (71), Expect = 1.4
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2

Query: 245 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFD----MYLGPNSIFKRYRSMSFTF 397
+VWRPD +++++ V GV + ++ C L +Y P +IF+ S+S T+
Sbjct: 106 MVWRPD----IVLENNVDGVFEVALYCNVLVSPDGCIYWLPPAIFRSSCSISVTY 156


>sp|P07510|ACHG_HUMAN Acetylcholine receptor subunit gamma OS=Homo
sapiens GN=CHRNG PE=1 SV=2
Length = 517

Score = 32.0 bits (71), Expect = 1.4
Identities = 17/55 (30%), Positives = 31/55 (56%), Gaps = 4/55 (7%)
Frame = +2

Query: 245 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFD----MYLGPNSIFKRYRSMSFTF 397
+VWRPD +++++ V GV + ++ C L +Y P +IF+ S+S T+
Sbjct: 106 MVWRPD----IVLENNVDGVFEVALYCNVLVSPDGCIYWLPPAIFRSACSISVTY 156


>sp|P13536|ACHG_BOVIN Acetylcholine receptor subunit gamma OS=Bos
taurus GN=CHRNG PE=2 SV=1
Length = 519

Score = 31.2 bits (69), Expect = 2.4
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 4/55 (7%)
Frame = +2

Query: 245 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFD----MYLGPNSIFKRYRSMSFTF 397
+VWRPD +++++ V GV + ++ C L +Y P +IF+ +S TF
Sbjct: 106 MVWRPD----IVLENNVDGVFEVALYCNVLVSPDGCVYWLPPAIFRSSCPVSVTF 156


>sp|Q9SAR0|1A16_ARATH 1-aminocyclopropane-1-carboxylate synthase 6
OS=Arabidopsis thaliana GN=ACS6 PE=1 SV=2
Length = 495

Score = 30.0 bits (66), Expect = 5.4
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1

Query: 13 WRCSISSVAVNANPSQSFACHESG 84
WR + V +N +P SF CHE G
Sbjct: 388 WRVIVHQVKLNVSPGGSFHCHEPG 411


>sp|P0A4Y8|ARGR_MYCTU Arginine repressor OS=Mycobacterium
tuberculosis GN=argR PE=1 SV=1
Length = 170

Score = 29.6 bits (65), Expect = 6.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2

Query: 5 VSGGDARF-----QVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVL 142
VSGG R ++L+S NL ++ A H++A DR+ LP+V+
Sbjct: 90 VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVV 140


>sp|A5U314|ARGR_MYCTA Arginine repressor OS=Mycobacterium
tuberculosis (strain ATCC 25177 / H37Ra) GN=argR PE=3
SV=1
Length = 170

Score = 29.6 bits (65), Expect = 6.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2

Query: 5 VSGGDARF-----QVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVL 142
VSGG R ++L+S NL ++ A H++A DR+ LP+V+
Sbjct: 90 VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVV 140


>sp|A1KJ74|ARGR_MYCBP Arginine repressor OS=Mycobacterium bovis
(strain BCG / Pasteur 1173P2) GN=argR PE=3 SV=1
Length = 170

Score = 29.6 bits (65), Expect = 6.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2

Query: 5 VSGGDARF-----QVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVL 142
VSGG R ++L+S NL ++ A H++A DR+ LP+V+
Sbjct: 90 VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVV 140


>sp|P0A4Y9|ARGR_MYCBO Arginine repressor OS=Mycobacterium bovis
GN=argR PE=3 SV=1
Length = 170

Score = 29.6 bits (65), Expect = 6.9
Identities = 17/51 (33%), Positives = 27/51 (52%), Gaps = 5/51 (9%)
Frame = +2

Query: 5 VSGGDARF-----QVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVL 142
VSGG R ++L+S NL ++ A H++A DR+ LP+V+
Sbjct: 90 VSGGTDRMARLLGELLVSTDDSGNLAVLRTPPGAAHYLASAIDRAALPQVV 140


>sp|P27486|1A1C_DIACA 1-aminocyclopropane-1-carboxylate synthase
OS=Dianthus caryophyllus GN=ACS2 PE=2 SV=1
Length = 517

Score = 29.6 bits (65), Expect = 7.1
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = +1

Query: 13 WRCSISSVAVNANPSQSFACHESG 84
WR I+ V +N +P SF C E G
Sbjct: 385 WRVIINEVKINVSPGSSFLCSEPG 408


tr_hit_id A9RME8
Definition tr|A9RME8|A9RME8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 114
Score (bit) 150.0
E-value 4.0e-35
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944013|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L08, 5'
(471 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9RME8|A9RME8_PHYPA Predicted protein OS=Physcomitrella paten... 150 4e-35
tr|A9NXH6|A9NXH6_PICSI Putative uncharacterized protein OS=Picea... 50 4e-05
tr|A9SYP7|A9SYP7_PHYPA Predicted protein (Fragment) OS=Physcomit... 49 2e-04
tr|B6TFR7|B6TFR7_MAIZE Chalcone isomerase OS=Zea mays PE=2 SV=1 47 4e-04
tr|B6SSF1|B6SSF1_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.002
tr|B4F9M5|B4F9M5_MAIZE Putative uncharacterized protein OS=Zea m... 45 0.002
tr|A9TWY8|A9TWY8_PHYPA Predicted protein OS=Physcomitrella paten... 45 0.002
tr|A9SD96|A9SD96_PHYPA Predicted protein OS=Physcomitrella paten... 44 0.003
tr|A7PUA6|A7PUA6_VITVI Chromosome chr7 scaffold_31, whole genome... 44 0.005
tr|A5AE11|A5AE11_VITVI Putative uncharacterized protein OS=Vitis... 44 0.005
tr|Q0D5A7|Q0D5A7_ORYSJ Os07g0571600 protein OS=Oryza sativa subs... 43 0.009
tr|A3BLC6|A3BLC6_ORYSJ Putative uncharacterized protein OS=Oryza... 43 0.009
tr|A2YMU6|A2YMU6_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.009
tr|Q69SP9|Q69SP9_ORYSJ Os06g0203600 protein OS=Oryza sativa subs... 42 0.012
tr|A3B9E9|A3B9E9_ORYSJ Putative uncharacterized protein OS=Oryza... 42 0.012
tr|A2YAF8|A2YAF8_ORYSI Putative uncharacterized protein OS=Oryza... 42 0.012
tr|Q6K7H0|Q6K7H0_ORYSJ Os02g0778500 protein OS=Oryza sativa subs... 41 0.026
tr|B8AJH7|B8AJH7_ORYSI Putative uncharacterized protein OS=Oryza... 41 0.026
tr|A3ABX6|A3ABX6_ORYSJ Putative uncharacterized protein OS=Oryza... 41 0.026
tr|Q9M1X2|Q9M1X2_ARATH Putative uncharacterized protein F16M2_20... 41 0.034
tr|B4FY11|B4FY11_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.034
tr|B4FI80|B4FI80_MAIZE Putative uncharacterized protein OS=Zea m... 41 0.034
tr|A7P4U7|A7P4U7_VITVI Chromosome chr4 scaffold_6, whole genome ... 40 0.076
tr|B8C2M0|B8C2M0_THAPS Predicted protein OS=Thalassiosira pseudo... 38 0.29
tr|B6SV98|B6SV98_MAIZE Putative uncharacterized protein OS=Zea m... 37 0.50
tr|A8HZA4|A8HZA4_CHLRE Predicted protein OS=Chlamydomonas reinha... 37 0.50
tr|Q8LFP0|Q8LFP0_ARATH Chalcone isomerase, putative OS=Arabidops... 37 0.65
tr|B7G763|B7G763_PHATR Predicted protein OS=Phaeodactylum tricor... 37 0.65
tr|Q9C8L2|Q9C8L2_ARATH Chalcone isomerase, putative; 94270-95700... 36 0.84
tr|A7P2A5|A7P2A5_VITVI Chromosome chr19 scaffold_4, whole genome... 36 0.84

>tr|A9RME8|A9RME8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_159965 PE=4 SV=1
Length = 224

Score = 150 bits (378), Expect = 4e-35
Identities = 71/114 (62%), Positives = 94/114 (82%), Gaps = 1/114 (0%)
Frame = +2

Query: 62 LLLVMNQDVACHHIAKGYDRSLLPRVLMAHGG-QAGRAKDALEEFTQCFNQEKLLKKGAE 238
L+LVM++DVA HHIAKG+D+SLLPR+ A G + G KDAL +FT+CFN+EK LKKG+E
Sbjct: 104 LVLVMDKDVAGHHIAKGFDKSLLPRIRKAQAGSKRGSGKDALRDFTKCFNREKTLKKGSE 163

Query: 239 VCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNSIFKRYRSMSFTFH 400
V L+W PD+ LVV D+++ VI+S ILC+A+FDMYLG +SIF++YR+MSFTFH
Sbjct: 164 VALLWTPDNKLVVYFDNQMRAVIESPILCRAVFDMYLGEDSIFRKYRNMSFTFH 217


>tr|A9NXH6|A9NXH6_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 300

Score = 50.4 bits (119), Expect = 4e-05
Identities = 27/91 (29%), Positives = 48/91 (52%)
Frame = +2

Query: 101 IAKGYDRSLLPRVLMAHGGQAGRAKDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVI 280
+ ++ S+ R+ G Q K+ L+ FT F + L +G ++ + P L
Sbjct: 198 VRSAFEESIGSRLQKFSGSQN---KELLQRFTSQFKDDHKLPRGTKIHITRFPGHILQTK 254

Query: 281 IDSRVCGVIQSSILCQALFDMYLGPNSIFKR 373
ID + G IQS +LC++LFD+Y+G + + K+
Sbjct: 255 IDEKEVGSIQSQLLCRSLFDLYIGEDPLDKQ 285


>tr|A9SYP7|A9SYP7_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_137498 PE=4 SV=1
Length = 200

Score = 48.5 bits (114), Expect = 2e-04
Identities = 24/70 (34%), Positives = 38/70 (54%)
Frame = +2

Query: 176 DALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGP 355
+ L+ FT F + L KG + L P + L ID G +QSS+LC++LFD+Y+G
Sbjct: 121 ELLQRFTGAFTDDIKLPKGTIIDLTRLPGNVLQTKIDGTEVGSVQSSLLCRSLFDLYIGD 180

Query: 356 NSIFKRYRSM 385
+ K + +
Sbjct: 181 DPFDKEAKKL 190


>tr|B6TFR7|B6TFR7_MAIZE Chalcone isomerase OS=Zea mays PE=2 SV=1
Length = 274

Score = 47.4 bits (111), Expect = 4e-04
Identities = 28/87 (32%), Positives = 46/87 (52%)
Frame = +2

Query: 101 IAKGYDRSLLPRVLMAHGGQAGRAKDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVI 280
+ +++S+ R L GGQ K+ L+ F F E L KG+ + L + L +
Sbjct: 172 VRSAFEKSVGSR-LQKFGGQD--TKELLQSFVAVFKDEYKLPKGSVIELSRESNHVLKIC 228

Query: 281 IDSRVCGVIQSSILCQALFDMYLGPNS 361
I+ G IQS +LC++L D+Y+G +S
Sbjct: 229 IEGEEVGSIQSKLLCKSLLDLYIGDDS 255


>tr|B6SSF1|B6SSF1_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 425

Score = 45.1 bits (105), Expect = 0.002
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2

Query: 182 LEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 352
L+ F CF+++ + G ++ D L+ ID + G +QS LC+A FDMY+G
Sbjct: 346 LKTFGSCFSEDIRIPAGTKIDFRQTSDGQLITEIDGKQIGTVQSKDLCRAFFDMYIG 402


>tr|B4F9M5|B4F9M5_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 425

Score = 45.1 bits (105), Expect = 0.002
Identities = 20/57 (35%), Positives = 32/57 (56%)
Frame = +2

Query: 182 LEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 352
L+ F CF+++ + G ++ D L+ ID + G +QS LC+A FDMY+G
Sbjct: 346 LKTFGSCFSEDIRIPAGTKIDFRQTSDGQLITEIDGKQIGTVQSKDLCRAFFDMYIG 402


>tr|A9TWY8|A9TWY8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_172454 PE=4 SV=1
Length = 463

Score = 44.7 bits (104), Expect = 0.002
Identities = 27/100 (27%), Positives = 46/100 (46%)
Frame = +2

Query: 65 LLVMNQDVACHHIAKGYDRSLLPRVLMAHGGQAGRAKDALEEFTQCFNQEKLLKKGAEVC 244
L+V Q + + + SL R+ G + L+ F + + L KG+ +
Sbjct: 323 LVVHYQGLKMRMVRNAFHESLRNRLSKI----GGNGDEGLQTFCSYLSDDIRLHKGSTID 378

Query: 245 LVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLGPNSI 364
+ W+ L + I+ R GVI S CQA FD+Y+G + +
Sbjct: 379 VRWQVGGRLRIEIEGRRVGVIHSPPFCQAFFDLYIGDSPV 418


>tr|A9SD96|A9SD96_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_127780 PE=4 SV=1
Length = 217

Score = 44.3 bits (103), Expect = 0.003
Identities = 37/122 (30%), Positives = 58/122 (47%), Gaps = 6/122 (4%)
Frame = +2

Query: 17 DARFQVLLSMQTPHNLLLVMNQDVACHHIAKGYDRSLLPRVLMAHGGQAGRAKDALEEFT 196
+A FQ L L + + +DV D +L+PR+ + G G A AL EF
Sbjct: 83 EALFQELAQAPVEKALQIKLARDVDGATFWGALDEALVPRLTASGAGADGDA--ALAEFG 140

Query: 197 QCFNQEKLLKKGAEVCLVWRPDDTL-VVIIDSRVCGV-----IQSSILCQALFDMYLGPN 358
F + + L+KG + L W TL V I +S + I+S L AL+D++LG +
Sbjct: 141 NVF-KNRSLQKGYVITLTWVQPSTLRVTISESEAANLKTEASIESKALLSALYDVFLGTS 199

Query: 359 SI 364
++
Sbjct: 200 AV 201


>tr|A7PUA6|A7PUA6_VITVI Chromosome chr7 scaffold_31, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00023722001
PE=4 SV=1
Length = 331

Score = 43.5 bits (101), Expect = 0.005
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +2

Query: 173 KDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 352
K+ L FT F E + KG+ + L L ID + G IQS +LC+++ D+Y+G
Sbjct: 250 KELLHRFTSQFKDEYKIPKGSVIDLSRERGHVLRTTIDGKEVGNIQSQLLCRSILDLYIG 309

Query: 353 PNSIFKR 373
+ +R
Sbjct: 310 EDPFDRR 316


>tr|A5AE11|A5AE11_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_001830 PE=4 SV=1
Length = 293

Score = 43.5 bits (101), Expect = 0.005
Identities = 22/67 (32%), Positives = 35/67 (52%)
Frame = +2

Query: 173 KDALEEFTQCFNQEKLLKKGAEVCLVWRPDDTLVVIIDSRVCGVIQSSILCQALFDMYLG 352
K+ L FT F E + KG+ + L L ID + G IQS +LC+++ D+Y+G
Sbjct: 212 KELLHRFTSQFKDEYKIPKGSVIDLSRERGHVLRTTIDGKEVGNIQSQLLCRSILDLYIG 271

Query: 353 PNSIFKR 373
+ +R
Sbjct: 272 EDPFDRR 278