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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944015
Clone id YMU02A01NGRL0004_L10
Library
Length 283
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_L10. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GCTCTGCCAAGGATATGATGGAGCTAATTTCTTTAGTGAAAGAGCAAGTGAGGTCCAAGT
TTGGGGTAGAACTTGAAGAAGAATTCATCTACATTCCCTTTAGATGAGGTATATCAAGCC
AACATTTTGGTCTCCACATGCAGAGTTTTTAATTAATGCCCCAAGAGAGGTCATTTTCTT
GCAAGGTATACTGGATAGGTCATTTGTTCTAACAGGGCTTTAATTTTAATGTCATGGCTC
TATATAATCATTCCAAAAAAAAAAAAAAGAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q6MAQ1
Definition sp|Q6MAQ1|MURB_PARUW UDP-N-acetylenolpyruvoylglucosamine reductase OS=Protochlamydia amoebophila (strain UWE25)
Align length 33
Score (bit) 36.2
E-value 0.052
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944015|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L10, 5'
         (254 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q6MAQ1|MURB_PARUW UDP-N-acetylenolpyruvoylglucosamine reducta...    36   0.052
sp|Q8RDQ3|MURB_FUSNN UDP-N-acetylenolpyruvoylglucosamine reducta...    36   0.052
sp|Q180P9|MURB_CLOD6 UDP-N-acetylenolpyruvoylglucosamine reducta...    35   0.12 
sp|Q890Y6|MURB_CLOTE UDP-N-acetylenolpyruvoylglucosamine reducta...    34   0.20 
sp|Q6HEQ5|MURB1_BACHK UDP-N-acetylenolpyruvoylglucosamine reduct...    34   0.20 
sp|Q81WD1|MURB1_BACAN UDP-N-acetylenolpyruvoylglucosamine reduct...    34   0.20 
sp|A0PYB4|MURB_CLONN UDP-N-acetylenolpyruvoylglucosamine reducta...    34   0.26 
sp|Q660S4|MURB_BORGA UDP-N-acetylenolpyruvoylglucosamine reducta...    33   0.44 
sp|A0LNZ0|MURB_SYNFM UDP-N-acetylenolpyruvoylglucosamine reducta...    33   0.57 
sp|Q97LP4|MURB_CLOAB UDP-N-acetylenolpyruvoylglucosamine reducta...    33   0.57 
sp|O51544|MURB_BORBU UDP-N-acetylenolpyruvoylglucosamine reducta...    33   0.57 
sp|A5ILF5|MURB_THEP1 UDP-N-acetylenolpyruvoylglucosamine reducta...    32   0.97 
sp|Q9X239|MURB_THEMA UDP-N-acetylenolpyruvoylglucosamine reducta...    32   0.97 
sp|Q636B7|MURB1_BACCZ UDP-N-acetylenolpyruvoylglucosamine reduct...    32   0.97 
sp|Q01NJ5|MURB_SOLUE UDP-N-acetylenolpyruvoylglucosamine reducta...    32   1.3  
sp|Q5WAV8|MURB_BACSK UDP-N-acetylenolpyruvoylglucosamine reducta...    31   1.7  
sp|A8MLW8|MURB_ALKOO UDP-N-acetylenolpyruvoylglucosamine reducta...    31   2.2  
sp|A3DBM4|MURB_CLOTH UDP-N-acetylenolpyruvoylglucosamine reducta...    30   2.8  
sp|A9KSS3|MURB_CLOPH UDP-N-acetylenolpyruvoylglucosamine reducta...    30   2.8  
sp|Q822B0|MURB_CHLCV UDP-N-acetylenolpyruvoylglucosamine reducta...    30   2.8  
sp|Q0AY75|MURB_SYNWW UDP-N-acetylenolpyruvoylglucosamine reducta...    30   3.7  
sp|A5N360|MURB_CLOK5 UDP-N-acetylenolpyruvoylglucosamine reducta...    30   4.8  
sp|Q255M5|MURB_CHLFF UDP-N-acetylenolpyruvoylglucosamine reducta...    30   4.8  
sp|Q9X6Y8|MURB_BORPE UDP-N-acetylenolpyruvoylglucosamine reducta...    29   6.3  
sp|Q7W509|MURB_BORPA UDP-N-acetylenolpyruvoylglucosamine reducta...    29   6.3  
sp|Q7MYE5|MURB_PHOLL UDP-N-acetylenolpyruvoylglucosamine reducta...    29   8.3  
sp|A4ILI2|MURB_GEOTN UDP-N-acetylenolpyruvoylglucosamine reducta...    29   8.3  
sp|Q2IG34|MURB_ANADE UDP-N-acetylenolpyruvoylglucosamine reducta...    29   8.3  

>sp|Q6MAQ1|MURB_PARUW UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Protochlamydia amoebophila (strain UWE25) GN=murB
           PE=3 SV=1
          Length = 299

 Score = 36.2 bits (82), Expect = 0.052
 Identities = 14/33 (42%), Positives = 25/33 (75%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEEFIYIPF 101
           +++D++ LI L++E V++K G ELE E  Y+P+
Sbjct: 262 TSQDVLALIRLIQETVKAKTGAELESEIRYVPY 294


>sp|Q8RDQ3|MURB_FUSNN UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Fusobacterium nucleatum subsp. nucleatum GN=murB PE=3
           SV=1
          Length = 281

 Score = 36.2 bits (82), Expect = 0.052
 Identities = 14/29 (48%), Positives = 24/29 (82%)
 Frame = +3

Query: 9   KDMMELISLVKEQVRSKFGVELEEEFIYI 95
           KD++++++LVK+ V  KFG++LEEE I +
Sbjct: 252 KDIIDILTLVKKSVLEKFGIKLEEEIIIV 280


>sp|Q180P9|MURB_CLOD6 UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Clostridium difficile (strain 630) GN=murB PE=3 SV=1
          Length = 304

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEE 83
           SAKD+++LI ++K  V +KFGV LEEE
Sbjct: 271 SAKDILDLIYVIKSAVYAKFGVMLEEE 297


>sp|Q890Y6|MURB_CLOTE UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Clostridium tetani GN=murB PE=3 SV=1
          Length = 307

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 15/31 (48%), Positives = 24/31 (77%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEEFIYI 95
           SAKD++ +I++V++ V+SKF VEL  E + I
Sbjct: 271 SAKDILNVINIVQDTVKSKFDVELHTEVLII 301


>sp|Q6HEQ5|MURB1_BACHK UDP-N-acetylenolpyruvoylglucosamine reductase
           1 OS=Bacillus thuringiensis subsp. konkukian GN=murB1
           PE=3 SV=1
          Length = 301

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEE 83
           SA+D++ LI+L+K+ ++ KFGVE+  E
Sbjct: 269 SAQDVLSLIALIKQTIKDKFGVEMHTE 295


>sp|Q81WD1|MURB1_BACAN UDP-N-acetylenolpyruvoylglucosamine reductase
           1 OS=Bacillus anthracis GN=murB1 PE=3 SV=1
          Length = 301

 Score = 34.3 bits (77), Expect = 0.20
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEE 83
           SA+D++ LI+L+K+ ++ KFGVE+  E
Sbjct: 269 SAQDVLSLIALIKQTIKDKFGVEMHTE 295


>sp|A0PYB4|MURB_CLONN UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Clostridium novyi (strain NT) GN=murB PE=3 SV=1
          Length = 307

 Score = 33.9 bits (76), Expect = 0.26
 Identities = 15/27 (55%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEE 83
           SAKD+++LI +VK+ V+ KF VEL  E
Sbjct: 271 SAKDILDLIEVVKKTVKEKFNVELNTE 297


>sp|Q660S4|MURB_BORGA UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Borrelia garinii GN=murB PE=3 SV=1
          Length = 306

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 16/34 (47%), Positives = 23/34 (67%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEEFIYIPFR 104
           ++ D+  LI  VK +V SK G+ LEEE +YI F+
Sbjct: 269 TSNDIKSLIEKVKTEVYSKTGLLLEEEVLYIGFK 302


>sp|A0LNZ0|MURB_SYNFM UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Syntrophobacter fumaroxidans (strain DSM 10017 /
           MPOB) GN=murB PE=3 SV=1
          Length = 345

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 15/26 (57%), Positives = 20/26 (76%)
 Frame = +3

Query: 6   AKDMMELISLVKEQVRSKFGVELEEE 83
           A+D++ LISLV+ +V  KFGV LE E
Sbjct: 303 ARDILALISLVENEVFGKFGVRLERE 328


>sp|Q97LP4|MURB_CLOAB UDP-N-acetylenolpyruvoylglucosamine reductase
           OS=Clostridium acetobutylicum GN=murB PE=3 SV=1
          Length = 305

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 14/27 (51%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEE 83
           +AKD+++LI  V+  V+SKF VEL+ E
Sbjct: 271 TAKDILDLIKFVQNTVKSKFNVELDTE 297
tr_hit_id A7PAR2
Definition tr|A7PAR2|A7PAR2_VITVI Chromosome chr14 scaffold_9, whole genome shotgun sequence OS=Vitis vinifera
Align length 31
Score (bit) 41.2
E-value 0.026
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944015|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L10, 5'
         (254 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7PAR2|A7PAR2_VITVI Chromosome chr14 scaffold_9, whole genome...    41   0.026
tr|A5B316|A5B316_VITVI Putative uncharacterized protein OS=Vitis...    41   0.026
tr|Q3LHI6|Q3LHI6_PHYPA MurB reductase OS=Physcomitrella patens s...    40   0.076
tr|A9SKV4|A9SKV4_PHYPA Predicted protein OS=Physcomitrella paten...    40   0.076
tr|B1B7S8|B1B7S8_CLOBO UDP-N-acetylenolpyruvoylglucosamine reduc...    36   1.1  
tr|B5E9K7|B5E9K7_GEOBB UDP-N-acetylenolpyruvoylglucosamine reduc...    35   1.4  
tr|A5TWY2|A5TWY2_FUSNP UDP-N-acetylmuramate dehydrogenase OS=Fus...    35   1.4  
tr|B1GYM7|B1GYM7_UNCTG UDP-N-acetylmuramate dehydrogenase OS=Unc...    35   1.9  
tr|B0N2G7|B0N2G7_9FIRM Putative uncharacterized protein OS=Clost...    35   2.5  
tr|A0RHT0|A0RHT0_BACAH UDP-N-acetylmuramate dehydrogenase OS=Bac...    34   3.2  
tr|B7JJZ7|B7JJZ7_BACCE UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B3ZRI2|B3ZRI2_BACCE UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B3Z6D1|B3Z6D1_BACCE UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B3YYM1|B3YYM1_BACCE UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B3J3R4|B3J3R4_BACAN UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B2ELP4|B2ELP4_9BACT UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B1UXJ0|B1UXJ0_BACAN UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B1GNI4|B1GNI4_BACAN UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B1F641|B1F641_BACAN UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B0QQ40|B0QQ40_BACAN UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B0Q7S0|B0Q7S0_BACAN UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B0AVU1|B0AVU1_BACAN UDP-N-acetylenolpyruvoylglucosamine reduc...    34   3.2  
tr|B8E323|B8E323_9BACT UDP-N-acetylenolpyruvoylglucosamine reduc...    34   4.2  
tr|B3K0X6|B3K0X6_9DELT UDP-N-acetylenolpyruvoylglucosamine reduc...    34   4.2  
tr|B0A740|B0A740_9CLOT Putative uncharacterized protein OS=Clost...    34   4.2  
tr|A7B239|A7B239_RUMGN Putative uncharacterized protein OS=Rumin...    34   4.2  
tr|B2A0L5|B2A0L5_NATTJ UDP-N-acetylenolpyruvoylglucosamine reduc...    33   5.5  
tr|A9VU71|A9VU71_BACWK UDP-N-acetylenolpyruvoylglucosamine reduc...    33   5.5  
tr|Q7P685|Q7P685_FUSNV UDP-N-acetylenolpyruvoylglucosamine reduc...    33   5.5  
tr|B2S0U6|B2S0U6_BORHD UDP-N-acetylenolpyruvoylglucosamine reduc...    33   7.2  

>tr|A7PAR2|A7PAR2_VITVI Chromosome chr14 scaffold_9, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038228001
           PE=4 SV=1
          Length = 344

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 17/31 (54%), Positives = 27/31 (87%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEEFIYI 95
           +++DM+ELI LVKE+V  +FGV+L+EE +Y+
Sbjct: 308 TSQDMLELIRLVKEKVYQRFGVQLKEEVLYV 338


>tr|A5B316|A5B316_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_017399 PE=4 SV=1
          Length = 677

 Score = 41.2 bits (95), Expect = 0.026
 Identities = 17/31 (54%), Positives = 27/31 (87%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEEFIYI 95
           +++DM+ELI LVKE+V  +FGV+L+EE +Y+
Sbjct: 641 TSQDMLELIRLVKEKVYQRFGVQLKEEVLYV 671


>tr|Q3LHI6|Q3LHI6_PHYPA MurB reductase OS=Physcomitrella patens
           subsp. patens GN=MurB PE=2 SV=1
          Length = 382

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = +3

Query: 6   AKDMMELISLVKEQVRSKFGVELEEEFIYIPF 101
           ++D+  LI+LVKE+V  KFG+ L++E +YIP+
Sbjct: 345 SQDVQALIALVKEEVHKKFGLWLQDEVLYIPY 376


>tr|A9SKV4|A9SKV4_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_233561 PE=4 SV=1
          Length = 382

 Score = 39.7 bits (91), Expect = 0.076
 Identities = 16/32 (50%), Positives = 26/32 (81%)
 Frame = +3

Query: 6   AKDMMELISLVKEQVRSKFGVELEEEFIYIPF 101
           ++D+  LI+LVKE+V  KFG+ L++E +YIP+
Sbjct: 345 SQDVQALIALVKEEVHKKFGLWLQDEVLYIPY 376


>tr|B1B7S8|B1B7S8_CLOBO UDP-N-acetylenolpyruvoylglucosamine
           reductase OS=Clostridium botulinum C str. Eklund GN=murB
           PE=4 SV=1
          Length = 307

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 16/27 (59%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEE 83
           SAKD++ELI +VK++V+ KF VEL  E
Sbjct: 271 SAKDILELIEVVKKEVKEKFDVELNTE 297


>tr|B5E9K7|B5E9K7_GEOBB UDP-N-acetylenolpyruvoylglucosamine
           reductase OS=Geobacter bemidjiensis (strain Bem / ATCC
           BAA-1014 / DSM 16622) GN=Gbem_3180 PE=4 SV=1
          Length = 327

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 16/33 (48%), Positives = 24/33 (72%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEEFIYIPF 101
           SA++M+ L  LVK++VR+  GV+LEEE   + F
Sbjct: 287 SAQEMVRLAELVKDEVRASLGVQLEEEVSCVGF 319


>tr|A5TWY2|A5TWY2_FUSNP UDP-N-acetylmuramate dehydrogenase
           OS=Fusobacterium nucleatum subsp. polymorphum ATCC 10953
           GN=murB PE=4 SV=1
          Length = 281

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 14/29 (48%), Positives = 23/29 (79%)
 Frame = +3

Query: 9   KDMMELISLVKEQVRSKFGVELEEEFIYI 95
           KD+ ++++LVK+ V  KFG++LEEE I +
Sbjct: 252 KDITDILTLVKKSVLEKFGIKLEEEIIIV 280


>tr|B1GYM7|B1GYM7_UNCTG UDP-N-acetylmuramate dehydrogenase
           OS=Uncultured termite group 1 bacterium phylotype Rs-D17
           GN=TGRD_637 PE=4 SV=1
          Length = 290

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/26 (53%), Positives = 22/26 (84%)
 Frame = +3

Query: 6   AKDMMELISLVKEQVRSKFGVELEEE 83
           A+D++ LI+L+KE+V+ KFG+ LE E
Sbjct: 260 AEDVLALINLIKEKVKEKFGISLETE 285


>tr|B0N2G7|B0N2G7_9FIRM Putative uncharacterized protein
           OS=Clostridium ramosum DSM 1402 GN=CLORAM_01257 PE=4
           SV=1
          Length = 304

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 16/27 (59%), Positives = 21/27 (77%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEE 83
           SAKD+ +LI LV+E+V  KFGV+L  E
Sbjct: 271 SAKDIYDLIMLVQEKVNEKFGVKLRRE 297


>tr|A0RHT0|A0RHT0_BACAH UDP-N-acetylmuramate dehydrogenase
           OS=Bacillus thuringiensis (strain Al Hakam) GN=murB PE=4
           SV=1
          Length = 303

 Score = 34.3 bits (77), Expect = 3.2
 Identities = 13/27 (48%), Positives = 22/27 (81%)
 Frame = +3

Query: 3   SAKDMMELISLVKEQVRSKFGVELEEE 83
           SA+D++ LI+L+K+ ++ KFGVE+  E
Sbjct: 271 SAQDVLSLIALIKQTIKDKFGVEMHTE 297