DK944018 |
Clone id |
YMU02A01NGRL0004_L13 |
Library |
YMU02 |
Length |
552 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_L13. 5' end sequence. |
Accession |
DK944018 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
GAGATAGAGTGGAAGCCAGTTCCTGTGGAGGAGATCTGTTTGAGATTCTTCCAGATCATC TTATTGTAGAGGTGCTCACAAGATTGCCAGTGGTTAGTTGGGTCTCCGCTGCTTGTGTGC AAAAGAGGTGGGCAGCTCTTTTTAGGAGTGAGAGTCTATGGCAAACAGCTCTCAGGAAAC GTTGGCCTAATGCAGAGAGGGATCGAAGATGGCCTGGACCCATAGGACGGGGGTCCCACA AAAGACAGTATATAGCTTTACACACAAGCAATTATCTCTTCAGCTTTGAGGATCAAGATG GGGACATTCATGAGTTGGTTGGTCATGCTTATCTTTTTCTCAAGGAGCAGCTTCAGGTAT CGGCACCCTTATCATATGGATTGCTTCATGGGACTGTTATAGATCAATTTCTTGCTTGTG GAAAAAAGGGACACTTGGCGCACGAACTAGCGTCTCAGATATGGTTGGCTGTAATTGACA ATCTCGATGAAAGTGAGCATACGTTTCATCTCCTCATGCAGATTGTGGAAGAATGGGAGG TATTCCTTCCCT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q3ECE2 |
Definition |
sp|Q3ECE2|FB85_ARATH Putative F-box protein At1g70960 OS=Arabidopsis thaliana |
Align length |
53 |
Score (bit) |
41.6 |
E-value |
0.003 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RB52 |
Definition |
tr|A9RB52|A9RB52_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
192 |
Score (bit) |
233.0 |
E-value |
7.0e-60 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944018|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_L13, 5' (552 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9RB52|A9RB52_PHYPA Predicted protein OS=Physcomitrella paten... 233 7e-60 tr|B8BD36|B8BD36_ORYSI Putative uncharacterized protein OS=Oryza... 197 2e-49 tr|A3C0A2|A3C0A2_ORYSJ Putative uncharacterized protein OS=Oryza... 197 2e-49 tr|A5BN92|A5BN92_VITVI Putative uncharacterized protein OS=Vitis... 197 3e-49 tr|A7Q4A6|A7Q4A6_VITVI Chromosome chr9 scaffold_49, whole genome... 197 4e-49 tr|B6UI71|B6UI71_MAIZE Lipid binding protein OS=Zea mays PE=2 SV=1 196 9e-49 tr|Q3EB36|Q3EB36_ARATH Uncharacterized protein At3g20270.1 OS=Ar... 169 1e-40 tr|Q0J0J3|Q0J0J3_ORYSJ Os09g0497600 protein OS=Oryza sativa subs... 91 5e-17 tr|A5BDA3|A5BDA3_VITVI Putative uncharacterized protein OS=Vitis... 70 6e-11 tr|A9LY11|A9LY11_9TRAC Putative F-box GID2 protein OS=Selaginell... 44 0.004 tr|Q7XQP8|Q7XQP8_ORYSA OSJNBa0084A10.7 protein OS=Oryza sativa G... 43 0.013 tr|Q307Q9|Q307Q9_ORYSI Defense-related F-box protein OS=Oryza sa... 43 0.013 tr|Q0JD50|Q0JD50_ORYSJ Os04g0431200 protein OS=Oryza sativa subs... 43 0.013 tr|Q01JR6|Q01JR6_ORYSA OSIGBa0160I14.7 protein OS=Oryza sativa G... 43 0.013 tr|B8ATZ5|B8ATZ5_ORYSI Putative uncharacterized protein OS=Oryza... 43 0.013 tr|B6U5W1|B6U5W1_MAIZE F-box only protein 9 OS=Zea mays PE=2 SV=1 43 0.013 tr|B6TB56|B6TB56_MAIZE F-box only protein 9 OS=Zea mays PE=2 SV=1 43 0.013 tr|A3ATZ7|A3ATZ7_ORYSJ Putative uncharacterized protein OS=Oryza... 43 0.013 tr|B8PEB1|B8PEB1_9APHY Predicted protein OS=Postia placenta Mad-... 42 0.016 tr|B6TE19|B6TE19_MAIZE F-box protein GID2 OS=Zea mays PE=2 SV=1 40 0.063 tr|A3A8C9|A3A8C9_ORYSJ Putative uncharacterized protein OS=Oryza... 40 0.082 tr|A2X6G7|A2X6G7_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.082 tr|B7FL96|B7FL96_MEDTR Putative uncharacterized protein OS=Medic... 40 0.11 tr|A9SN35|A9SN35_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.11 tr|A9LY25|A9LY25_PHYPA F-box GID2-like protein OS=Physcomitrella... 40 0.11 tr|A2Z0V9|A2Z0V9_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.11 tr|A2XH26|A2XH26_ORYSI Putative uncharacterized protein OS=Oryza... 40 0.11 tr|A7NVE5|A7NVE5_VITVI Chromosome chr18 scaffold_1, whole genome... 39 0.18 tr|B6LR30|B6LR30_BRAFL Putative uncharacterized protein OS=Branc... 39 0.18 tr|B6L1M5|B6L1M5_BRAFL Putative uncharacterized protein OS=Branc... 39 0.18
>tr|A9RB52|A9RB52_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_63769 PE=4 SV=1 Length = 499
Score = 233 bits (593), Expect = 7e-60 Identities = 107/192 (55%), Positives = 144/192 (75%), Gaps = 10/192 (5%) Frame = +3
Query: 6 RVEASSCGG---------DLFEILPDHLIVEVLTRLPVVSWVSAACVQKRWAALFRSESL 158 +++ +SCG D + LPDHL++E+L R+P W+ AACV+KRW A+F+ + L Sbjct: 258 KIQTASCGLQPDSEEGGIDYMDKLPDHLLIEILVRVPTSDWIVAACVKKRWGAIFQGDGL 317
Query: 159 WQTALRKRWPNAERDRRWPGPIGRGSHKRQYIALHTSNYLFSFEDQDGDIHELVGHAYLF 338 WQTAL +RWP A +RWPGPIGRGS KR++ AL+ S+ L F++ ++ E+ GH YL+ Sbjct: 318 WQTALIRRWPGAGNAKRWPGPIGRGSAKRRFTALNVSSSLL-FQNSKSEVDEMAGHVYLY 376
Query: 339 LKEQLQVSA-PLSYGLLHGTVIDQFLACGKKGHLAHELASQIWLAVIDNLDESEHTFHLL 515 LKEQL+++ PLSYGLLHGT+IDQFLACGK AH++ASQIW+AV+ NL+E+E TFHLL Sbjct: 377 LKEQLELATLPLSYGLLHGTIIDQFLACGKNSEEAHDVASQIWVAVLGNLEETERTFHLL 436
Query: 516 MQIVEEWEVFLP 551 M+I EEWEVFLP Sbjct: 437 MRIAEEWEVFLP 448
>tr|B8BD36|B8BD36_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_31899 PE=4 SV=1 Length = 243
Score = 197 bits (502), Expect = 2e-49 Identities = 93/171 (54%), Positives = 121/171 (70%) Frame = +3
Query: 39 FEILPDHLIVEVLTRLPVVSWVSAACVQKRWAALFRSESLWQTALRKRWPNAERDRRWPG 218 F LP+HL+VE+ RLP WV +CV K WA++F+ E +WQTA+ + WP+A +RWPG Sbjct: 25 FGRLPEHLLVEIFIRLPTCEWVQISCVSKHWASIFQGECMWQTAIARNWPSAGLRKRWPG 84
Query: 219 PIGRGSHKRQYIALHTSNYLFSFEDQDGDIHELVGHAYLFLKEQLQVSAPLSYGLLHGTV 398 PI RGS +R++ AL+ S L S GDI ELVGH YL+LKEQL+ +LHGT+ Sbjct: 85 PIPRGSARRRFQALYVSQNLVS---SGGDIDELVGHTYLYLKEQLERPVVAPSSILHGTI 141
Query: 399 IDQFLACGKKGHLAHELASQIWLAVIDNLDESEHTFHLLMQIVEEWEVFLP 551 IDQF+ACG+ G AHELAS+IWLAVIDNL+E++ TF LL + +E E FLP Sbjct: 142 IDQFIACGRTGEKAHELASKIWLAVIDNLEENQQTFLLLKHLSQEGEFFLP 192
>tr|A3C0A2|A3C0A2_ORYSJ Putative uncharacterized protein OS=Oryza sativa subsp. japonica GN=OsJ_028724 PE=4 SV=1 Length = 251
Score = 197 bits (502), Expect = 2e-49 Identities = 93/171 (54%), Positives = 121/171 (70%) Frame = +3
Query: 39 FEILPDHLIVEVLTRLPVVSWVSAACVQKRWAALFRSESLWQTALRKRWPNAERDRRWPG 218 F LP+HL+VE+ RLP WV +CV K WA++F+ E +WQTA+ + WP+A +RWPG Sbjct: 33 FGRLPEHLLVEIFIRLPTCEWVQISCVSKHWASIFQGECMWQTAIARNWPSAGLRKRWPG 92
Query: 219 PIGRGSHKRQYIALHTSNYLFSFEDQDGDIHELVGHAYLFLKEQLQVSAPLSYGLLHGTV 398 PI RGS +R++ AL+ S L S GDI ELVGH YL+LKEQL+ +LHGT+ Sbjct: 93 PIPRGSARRRFQALYVSQNLVS---SGGDIDELVGHTYLYLKEQLERPVVAPSSILHGTI 149
Query: 399 IDQFLACGKKGHLAHELASQIWLAVIDNLDESEHTFHLLMQIVEEWEVFLP 551 IDQF+ACG+ G AHELAS+IWLAVIDNL+E++ TF LL + +E E FLP Sbjct: 150 IDQFIACGRTGEKAHELASKIWLAVIDNLEENQQTFLLLKHLSQEGEFFLP 200
>tr|A5BN92|A5BN92_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_007010 PE=4 SV=1 Length = 432
Score = 197 bits (501), Expect = 3e-49 Identities = 98/173 (56%), Positives = 126/173 (72%), Gaps = 2/173 (1%) Frame = +3
Query: 39 FEILPDHLIVEVLTRLPVVSWVSAACVQKRWAALFRSESLWQTALRKRWPNAERDRRWPG 218 F LPDHL++E+ R+P W + V K WA FR ESLWQTAL + +P A + +RWPG Sbjct: 213 FAKLPDHLLIEIFVRVPHSEWAQISSVSKLWAKQFREESLWQTALVRSFPLASQAKRWPG 272
Query: 219 PIGRGSHKRQYIALHTSNYLFSFEDQDGDIHELVGHAYLFLKEQLQVS--APLSYGLLHG 392 PI RG KR+Y AL S ++F+ DG++ E+VGH YLFLKEQLQ+S AP S G+LHG Sbjct: 273 PIPRGLSKRRYAALCVSKHIFTL---DGEMDEIVGHTYLFLKEQLQLSTMAP-SSGILHG 328
Query: 393 TVIDQFLACGKKGHLAHELASQIWLAVIDNLDESEHTFHLLMQIVEEWEVFLP 551 T+IDQF+ACGK +AHELASQIWLAV+DNL+E+ +TF LL + +E +VFLP Sbjct: 329 TIIDQFIACGKSRDVAHELASQIWLAVLDNLEENHNTFFLLKRFAQEGDVFLP 381
>tr|A7Q4A6|A7Q4A6_VITVI Chromosome chr9 scaffold_49, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00029613001 PE=4 SV=1 Length = 236
Score = 197 bits (500), Expect = 4e-49 Identities = 98/173 (56%), Positives = 126/173 (72%), Gaps = 2/173 (1%) Frame = +3
Query: 39 FEILPDHLIVEVLTRLPVVSWVSAACVQKRWAALFRSESLWQTALRKRWPNAERDRRWPG 218 F LPDHL++E+ R+P W + V K WA FR ESLWQTAL + +P A + +RWPG Sbjct: 17 FAKLPDHLLIEIFVRVPHSEWAQISSVSKLWAKQFREESLWQTALVRSFPLASQAKRWPG 76
Query: 219 PIGRGSHKRQYIALHTSNYLFSFEDQDGDIHELVGHAYLFLKEQLQVS--APLSYGLLHG 392 PI RG KR+Y AL S ++F+ DG++ E+VGH YLFLKEQLQ+S AP S G+LHG Sbjct: 77 PIPRGLSKRRYAALCVSKHIFTL---DGEMDEIVGHTYLFLKEQLQLSTMAP-SSGILHG 132
Query: 393 TVIDQFLACGKKGHLAHELASQIWLAVIDNLDESEHTFHLLMQIVEEWEVFLP 551 T+IDQF+ACGK +AHELASQIWLAV+DNL+E+ +TF LL + +E +VFLP Sbjct: 133 TIIDQFIACGKSRDVAHELASQIWLAVLDNLEENHYTFLLLKRFAQEGDVFLP 185
>tr|B6UI71|B6UI71_MAIZE Lipid binding protein OS=Zea mays PE=2 SV=1 Length = 227
Score = 196 bits (497), Expect = 9e-49 Identities = 91/168 (54%), Positives = 121/168 (72%) Frame = +3
Query: 48 LPDHLIVEVLTRLPVVSWVSAACVQKRWAALFRSESLWQTALRKRWPNAERDRRWPGPIG 227 LP+HLI+E+L RLPV WV ACV K WA++F+ E +WQTA+ + WP+A +RWPGPI Sbjct: 12 LPEHLIIEILIRLPVYEWVQLACVNKHWASIFQGECVWQTAIARNWPSAGLQKRWPGPIP 71
Query: 228 RGSHKRQYIALHTSNYLFSFEDQDGDIHELVGHAYLFLKEQLQVSAPLSYGLLHGTVIDQ 407 RGS +R++ AL+ S L G+I ELVGH YL+LKEQL+ +LHGT+IDQ Sbjct: 72 RGSARRRFQALYVSENLVP---SGGEIDELVGHTYLYLKEQLERPVMPPSSILHGTIIDQ 128
Query: 408 FLACGKKGHLAHELASQIWLAVIDNLDESEHTFHLLMQIVEEWEVFLP 551 F+ACG G AH+LAS+IWLAVID+L+E++ TF LL ++ +E E FLP Sbjct: 129 FIACGNTGEKAHDLASKIWLAVIDSLEENQQTFLLLKRVAQEGEFFLP 176
>tr|Q3EB36|Q3EB36_ARATH Uncharacterized protein At3g20270.1 OS=Arabidopsis thaliana GN=At3g20270 PE=4 SV=1 Length = 722
Score = 169 bits (427), Expect = 1e-40 Identities = 76/171 (44%), Positives = 118/171 (69%) Frame = +3
Query: 39 FEILPDHLIVEVLTRLPVVSWVSAACVQKRWAALFRSESLWQTALRKRWPNAERDRRWPG 218 F L + L++E+ R+P+ +W +CV+K+WA LFR E LW AL + +P A + + W G Sbjct: 19 FGKLTEDLLIEIFIRIPITNWEQVSCVRKQWANLFRGECLWLAALNRAYPLASKTKSWIG 78
Query: 219 PIGRGSHKRQYIALHTSNYLFSFEDQDGDIHELVGHAYLFLKEQLQVSAPLSYGLLHGTV 398 PI +G KR+Y+AL+ S + +D D I E++GH Y+FL +QLQ+S + G+LHGT+ Sbjct: 79 PIRQGLSKRRYVALYISRNILGVDDTD--IDEMLGHIYVFLNDQLQLSTMPASGILHGTL 136
Query: 399 IDQFLACGKKGHLAHELASQIWLAVIDNLDESEHTFHLLMQIVEEWEVFLP 551 IDQ + CG+ A ELA++IWLA++DNL++++HTF +L I +E++ FLP Sbjct: 137 IDQLIVCGQSKEEAGELATKIWLALLDNLEDTKHTFTVLKSIAQEYDGFLP 187
>tr|Q0J0J3|Q0J0J3_ORYSJ Os09g0497600 protein OS=Oryza sativa subsp. japonica GN=Os09g0497600 PE=4 SV=1 Length = 79
Score = 90.5 bits (223), Expect = 5e-17 Identities = 36/69 (52%), Positives = 49/69 (71%) Frame = +3
Query: 39 FEILPDHLIVEVLTRLPVVSWVSAACVQKRWAALFRSESLWQTALRKRWPNAERDRRWPG 218 F LP+HL+VE+ RLP WV +CV K WA++F+ E +WQTA+ + WP+A +RWPG Sbjct: 8 FGRLPEHLLVEIFIRLPTCEWVQISCVSKHWASIFQGECMWQTAIARNWPSAGLRKRWPG 67
Query: 219 PIGRGSHKR 245 PI RGS +R Sbjct: 68 PIPRGSARR 76
>tr|A5BDA3|A5BDA3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_009864 PE=4 SV=1 Length = 180
Score = 70.5 bits (171), Expect = 6e-11 Identities = 42/90 (46%), Positives = 53/90 (58%), Gaps = 2/90 (2%) Frame = +3
Query: 231 GSHKRQYIALHTSNYLFSFE--DQDGDIHELVGHAYLFLKEQLQVSAPLSYGLLHGTVID 404 G H R H N+ E ++H V LFLKEQL++S S+ L GT+ID Sbjct: 62 GKHDRTLKPKHVDNHKREVEVYHLTRELH-FVSRTSLFLKEQLRLSTVTSF--LQGTLID 118
Query: 405 QFLACGKKGHLAHELASQIWLAVIDNLDES 494 QF+ACGK +AHELASQIWL V+ NL E+ Sbjct: 119 QFVACGKSRDVAHELASQIWLTVLGNLKEN 148
>tr|A9LY11|A9LY11_9TRAC Putative F-box GID2 protein OS=Selaginella moellendorffii PE=2 SV=1 Length = 158
Score = 44.3 bits (103), Expect = 0.004 Identities = 23/65 (35%), Positives = 34/65 (52%), Gaps = 5/65 (7%) Frame = +3
Query: 54 DHLIVEVLTRLPVVSWVSAACVQKRWAALFRSESLWQTALRKRWP--NAERDRRWPG--- 218 D +++EV L S +CV K+W+ + R E LW++ WP A+R RR G Sbjct: 11 DDMLLEVFKHLDAFSLARVSCVSKQWSGVARHEKLWESLCILHWPAAAAKRSRRSSGHKN 70
Query: 219 PIGRG 233 P+G G Sbjct: 71 PLGSG 75
|