DK944024
Clone id YMU02A01NGRL0004_L21
Library
Length 270
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_L21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGACATTGAAGCAGAAGAAGA
AAGAGACCTATTTCCCAAAGCGAAAATATGCTCTGAAGGCTTGATGAGGTGTTATTTTGT
GCGGAAGATTGTTTCTGATACTAGCCAAGAGAGAATGGCTAGGGTTTTGTAATCAGACAG
CTGATTTAGGCTTACTTCAACATTGAGTCTTTCATGTCTTGGATGGTGCTCCATTTGACC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O74904
Definition sp|O74904|RL35_SCHPO 60S ribosomal protein L35 OS=Schizosaccharomyces pombe
Align length 20
Score (bit) 36.2
E-value 0.053
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944024|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L21, 5'
(200 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|O74904|RL35_SCHPO 60S ribosomal protein L35 OS=Schizosaccharo... 36 0.053
sp|Q9M5L0|RL35_EUPES 60S ribosomal protein L35 OS=Euphorbia esul... 32 0.76
sp|Q9LZ41|RL354_ARATH 60S ribosomal protein L35-4 OS=Arabidopsis... 32 0.99
sp|O80626|RL352_ARATH 60S ribosomal protein L35-2 OS=Arabidopsis... 32 1.3
sp|Q9SF53|RL351_ARATH 60S ribosomal protein L35-1 OS=Arabidopsis... 32 1.3
sp|P39741|RL35_YEAST 60S ribosomal protein L35 OS=Saccharomyces ... 31 1.7
sp|A6NE52|K1875_HUMAN WD repeat-containing protein KIAA1875 OS=H... 31 2.2
sp|Q9M3D2|RL353_ARATH 60S ribosomal protein L35-3 OS=Arabidopsis... 30 2.9
sp|P52817|RL35_BABBO 60S ribosomal protein L35 OS=Babesia bovis ... 30 4.9
sp|Q69CJ9|RL35_OPHHA 60S ribosomal protein L35 OS=Ophiophagus ha... 29 6.4
sp|Q98TF7|RL35_CHICK 60S ribosomal protein L35 OS=Gallus gallus ... 29 6.4
sp|P17078|RL35_RAT 60S ribosomal protein L35 OS=Rattus norvegicu... 29 8.4
sp|Q6ZWV7|RL35_MOUSE 60S ribosomal protein L35 OS=Mus musculus G... 29 8.4
sp|P42766|RL35_HUMAN 60S ribosomal protein L35 OS=Homo sapiens G... 29 8.4
sp|Q3MHM7|RL35_BOVIN 60S ribosomal protein L35 OS=Bos taurus GN=... 29 8.4

>sp|O74904|RL35_SCHPO 60S ribosomal protein L35
OS=Schizosaccharomyces pombe GN=rpl35 PE=1 SV=1
Length = 122

Score = 36.2 bits (82), Expect = 0.053
Identities = 17/20 (85%), Positives = 17/20 (85%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
TLKQ KKE YFP RKYALKA
Sbjct: 103 TLKQIKKERYFPLRKYALKA 122


>sp|Q9M5L0|RL35_EUPES 60S ribosomal protein L35 OS=Euphorbia esula
GN=RPL35 PE=2 SV=1
Length = 123

Score = 32.3 bits (72), Expect = 0.76
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALK 58
T ++KKKE YFP RKYA+K
Sbjct: 104 TEREKKKEMYFPMRKYAIK 122


>sp|Q9LZ41|RL354_ARATH 60S ribosomal protein L35-4 OS=Arabidopsis
thaliana GN=RPL35D PE=2 SV=1
Length = 123

Score = 32.0 bits (71), Expect = 0.99
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALK 58
T ++KKKE YFP RKYA+K
Sbjct: 104 TEREKKKEMYFPVRKYAIK 122


>sp|O80626|RL352_ARATH 60S ribosomal protein L35-2 OS=Arabidopsis
thaliana GN=RPL35B PE=2 SV=1
Length = 123

Score = 31.6 bits (70), Expect = 1.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALK 58
T ++KKKE YFP RKYA+K
Sbjct: 104 TEREKKKEMYFPIRKYAIK 122


>sp|Q9SF53|RL351_ARATH 60S ribosomal protein L35-1 OS=Arabidopsis
thaliana GN=RPL35A PE=2 SV=1
Length = 123

Score = 31.6 bits (70), Expect = 1.3
Identities = 13/19 (68%), Positives = 16/19 (84%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALK 58
T ++KKKE YFP RKYA+K
Sbjct: 104 TEREKKKEMYFPIRKYAIK 122


>sp|P39741|RL35_YEAST 60S ribosomal protein L35 OS=Saccharomyces
cerevisiae GN=RPL35A PE=1 SV=1
Length = 120

Score = 31.2 bits (69), Expect = 1.7
Identities = 13/20 (65%), Positives = 17/20 (85%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
T KQ+KK+ FP+RKYA+KA
Sbjct: 101 TEKQRKKQIAFPQRKYAIKA 120


>sp|A6NE52|K1875_HUMAN WD repeat-containing protein KIAA1875 OS=Homo
sapiens GN=KIAA1875 PE=2 SV=2
Length = 1622

Score = 30.8 bits (68), Expect = 2.2
Identities = 15/41 (36%), Positives = 24/41 (58%)
Frame = -1

Query: 125 TLAILSWLVSETIFRTK*HLIKPSEHIFALGNRSLSSSASM 3
TL++L WL S+T+F+T+ H P I + N +SS +
Sbjct: 578 TLSVLEWLSSKTVFQTEAHSPGPVVAIASTWNSIVSSGGDL 618


>sp|Q9M3D2|RL353_ARATH 60S ribosomal protein L35-3 OS=Arabidopsis
thaliana GN=RPL35C PE=2 SV=1
Length = 123

Score = 30.4 bits (67), Expect = 2.9
Identities = 12/19 (63%), Positives = 16/19 (84%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALK 58
T ++KKK+ YFP RKYA+K
Sbjct: 104 TEREKKKDMYFPIRKYAIK 122


>sp|P52817|RL35_BABBO 60S ribosomal protein L35 OS=Babesia bovis
GN=RPL35 PE=2 SV=1
Length = 123

Score = 29.6 bits (65), Expect = 4.9
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYAL 55
T+KQ+KK FPKRKYAL
Sbjct: 104 TIKQRKKCENFPKRKYAL 121


>sp|Q69CJ9|RL35_OPHHA 60S ribosomal protein L35 OS=Ophiophagus
hannah GN=RPL35 PE=2 SV=3
Length = 123

Score = 29.3 bits (64), Expect = 6.4
Identities = 12/20 (60%), Positives = 16/20 (80%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
T KQ++KE +P RKYA+KA
Sbjct: 104 TKKQQRKERLYPPRKYAVKA 123


tr_hit_id A9SXL8
Definition tr|A9SXL8|A9SXL8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 20
Score (bit) 37.0
E-value 0.49
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944024|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L21, 5'
(200 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9SXL8|A9SXL8_PHYPA Predicted protein OS=Physcomitrella paten... 37 0.49
tr|Q0UN15|Q0UN15_PHANO Putative uncharacterized protein OS=Phaeo... 36 1.1
tr|B8CAG2|B8CAG2_THAPS RL35, ribosomal protein 35 60S large ribo... 35 1.9
tr|B3TLM6|B3TLM6_ELAGV 60S ribosomal protein L35 OS=Elaeis guine... 35 1.9
tr|B6JWH3|B6JWH3_SCHJP 60S ribosomal protein L35 OS=Schizosaccha... 35 1.9
tr|A9SPV0|A9SPV0_PHYPA Predicted protein OS=Physcomitrella paten... 35 2.4
tr|B8P320|B8P320_9APHY 60S ribosomal protein L35 OS=Postia place... 34 4.1
tr|B7FN27|B7FN27_MEDTR Putative uncharacterized protein OS=Medic... 33 5.4
tr|A9RF60|A9RF60_PHYPA Predicted protein OS=Physcomitrella paten... 33 7.1
tr|A9NQ49|A9NQ49_PICSI Putative uncharacterized protein OS=Picea... 33 7.1
tr|A4RX94|A4RX94_OSTLU Ribosomal protein L35, component of cytos... 33 7.1
tr|Q6K667|Q6K667_ORYSJ Os02g0503400 protein OS=Oryza sativa subs... 33 9.2
tr|B8AIB7|B8AIB7_ORYSI Putative uncharacterized protein OS=Oryza... 33 9.2
tr|B6TIR8|B6TIR8_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=... 33 9.2
tr|B6T2K5|B6T2K5_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=... 33 9.2
tr|B6T0L1|B6T0L1_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=... 33 9.2
tr|B6SZ64|B6SZ64_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=... 33 9.2
tr|B6SX73|B6SX73_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=... 33 9.2
tr|A9NTY0|A9NTY0_PICSI Putative uncharacterized protein OS=Picea... 33 9.2
tr|A3A759|A3A759_ORYSJ Putative uncharacterized protein OS=Oryza... 33 9.2
tr|Q5BE02|Q5BE02_EMENI Putative uncharacterized protein OS=Emeri... 33 9.2
tr|B2VQQ5|B2VQQ5_PYRTR 60S ribosomal protein L35 OS=Pyrenophora ... 33 9.2

>tr|A9SXL8|A9SXL8_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_189477 PE=4 SV=1
Length = 123

Score = 37.0 bits (84), Expect = 0.49
Identities = 16/20 (80%), Positives = 18/20 (90%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
T KQKKKE YFPKRK+A+KA
Sbjct: 104 TEKQKKKEAYFPKRKFAVKA 123


>tr|Q0UN15|Q0UN15_PHANO Putative uncharacterized protein
OS=Phaeosphaeria nodorum GN=SNOG_06849 PE=4 SV=2
Length = 164

Score = 35.8 bits (81), Expect = 1.1
Identities = 15/20 (75%), Positives = 19/20 (95%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
T KQKKK+T+FP+RKYA+KA
Sbjct: 145 TEKQKKKQTHFPQRKYAVKA 164


>tr|B8CAG2|B8CAG2_THAPS RL35, ribosomal protein 35 60S large
ribosomal subunit OS=Thalassiosira pseudonana CCMP1335
GN=RL35 PE=4 SV=1
Length = 121

Score = 35.0 bits (79), Expect = 1.9
Identities = 14/20 (70%), Positives = 19/20 (95%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
TLKQ+KK+T+FP R+YA+KA
Sbjct: 102 TLKQQKKDTHFPMRRYAVKA 121


>tr|B3TLM6|B3TLM6_ELAGV 60S ribosomal protein L35 OS=Elaeis
guineensis var. tenera PE=2 SV=1
Length = 123

Score = 35.0 bits (79), Expect = 1.9
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
T +QKKKE YFP RKYA+KA
Sbjct: 104 TERQKKKEMYFPMRKYAIKA 123


>tr|B6JWH3|B6JWH3_SCHJP 60S ribosomal protein L35
OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_00749
PE=4 SV=1
Length = 122

Score = 35.0 bits (79), Expect = 1.9
Identities = 16/20 (80%), Positives = 17/20 (85%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
TLKQ KKE YFP RK+ALKA
Sbjct: 103 TLKQLKKERYFPLRKFALKA 122


>tr|A9SPV0|A9SPV0_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_214555 PE=4 SV=1
Length = 123

Score = 34.7 bits (78), Expect = 2.4
Identities = 15/20 (75%), Positives = 17/20 (85%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
T KQKKKE YFP RK+A+KA
Sbjct: 104 TEKQKKKEAYFPMRKFAVKA 123


>tr|B8P320|B8P320_9APHY 60S ribosomal protein L35 OS=Postia placenta
Mad-698-R GN=POSPLDRAFT_126854 PE=4 SV=1
Length = 126

Score = 33.9 bits (76), Expect = 4.1
Identities = 14/20 (70%), Positives = 18/20 (90%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
TLKQ+KK+ +FP RKYA+KA
Sbjct: 106 TLKQRKKDIHFPLRKYAVKA 125


>tr|B7FN27|B7FN27_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 123

Score = 33.5 bits (75), Expect = 5.4
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
T ++KKKE YFP RKYA+KA
Sbjct: 104 TEREKKKEIYFPVRKYAIKA 123


>tr|A9RF60|A9RF60_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_62237 PE=4 SV=1
Length = 123

Score = 33.1 bits (74), Expect = 7.1
Identities = 14/20 (70%), Positives = 17/20 (85%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALKA 61
T KQ+KKE YFP RK+A+KA
Sbjct: 104 TEKQEKKEAYFPMRKFAVKA 123


>tr|A9NQ49|A9NQ49_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 123

Score = 33.1 bits (74), Expect = 7.1
Identities = 14/19 (73%), Positives = 16/19 (84%)
Frame = +2

Query: 2 TLKQKKKETYFPKRKYALK 58
T +QKKKE YFP RKYA+K
Sbjct: 104 TERQKKKEMYFPMRKYAVK 122