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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944024
Clone id YMU02A01NGRL0004_L21
Library
Length 270
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_L21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGACATTGAAGCAGAAGAAGA
AAGAGACCTATTTCCCAAAGCGAAAATATGCTCTGAAGGCTTGATGAGGTGTTATTTTGT
GCGGAAGATTGTTTCTGATACTAGCCAAGAGAGAATGGCTAGGGTTTTGTAATCAGACAG
CTGATTTAGGCTTACTTCAACATTGAGTCTTTCATGTCTTGGATGGTGCTCCATTTGACC
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O74904
Definition sp|O74904|RL35_SCHPO 60S ribosomal protein L35 OS=Schizosaccharomyces pombe
Align length 20
Score (bit) 36.2
E-value 0.053
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944024|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L21, 5'
         (200 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O74904|RL35_SCHPO 60S ribosomal protein L35 OS=Schizosaccharo...    36   0.053
sp|Q9M5L0|RL35_EUPES 60S ribosomal protein L35 OS=Euphorbia esul...    32   0.76 
sp|Q9LZ41|RL354_ARATH 60S ribosomal protein L35-4 OS=Arabidopsis...    32   0.99 
sp|O80626|RL352_ARATH 60S ribosomal protein L35-2 OS=Arabidopsis...    32   1.3  
sp|Q9SF53|RL351_ARATH 60S ribosomal protein L35-1 OS=Arabidopsis...    32   1.3  
sp|P39741|RL35_YEAST 60S ribosomal protein L35 OS=Saccharomyces ...    31   1.7  
sp|A6NE52|K1875_HUMAN WD repeat-containing protein KIAA1875 OS=H...    31   2.2  
sp|Q9M3D2|RL353_ARATH 60S ribosomal protein L35-3 OS=Arabidopsis...    30   2.9  
sp|P52817|RL35_BABBO 60S ribosomal protein L35 OS=Babesia bovis ...    30   4.9  
sp|Q69CJ9|RL35_OPHHA 60S ribosomal protein L35 OS=Ophiophagus ha...    29   6.4  
sp|Q98TF7|RL35_CHICK 60S ribosomal protein L35 OS=Gallus gallus ...    29   6.4  
sp|P17078|RL35_RAT 60S ribosomal protein L35 OS=Rattus norvegicu...    29   8.4  
sp|Q6ZWV7|RL35_MOUSE 60S ribosomal protein L35 OS=Mus musculus G...    29   8.4  
sp|P42766|RL35_HUMAN 60S ribosomal protein L35 OS=Homo sapiens G...    29   8.4  
sp|Q3MHM7|RL35_BOVIN 60S ribosomal protein L35 OS=Bos taurus GN=...    29   8.4  

>sp|O74904|RL35_SCHPO 60S ribosomal protein L35
           OS=Schizosaccharomyces pombe GN=rpl35 PE=1 SV=1
          Length = 122

 Score = 36.2 bits (82), Expect = 0.053
 Identities = 17/20 (85%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           TLKQ KKE YFP RKYALKA
Sbjct: 103 TLKQIKKERYFPLRKYALKA 122


>sp|Q9M5L0|RL35_EUPES 60S ribosomal protein L35 OS=Euphorbia esula
           GN=RPL35 PE=2 SV=1
          Length = 123

 Score = 32.3 bits (72), Expect = 0.76
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALK 58
           T ++KKKE YFP RKYA+K
Sbjct: 104 TEREKKKEMYFPMRKYAIK 122


>sp|Q9LZ41|RL354_ARATH 60S ribosomal protein L35-4 OS=Arabidopsis
           thaliana GN=RPL35D PE=2 SV=1
          Length = 123

 Score = 32.0 bits (71), Expect = 0.99
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALK 58
           T ++KKKE YFP RKYA+K
Sbjct: 104 TEREKKKEMYFPVRKYAIK 122


>sp|O80626|RL352_ARATH 60S ribosomal protein L35-2 OS=Arabidopsis
           thaliana GN=RPL35B PE=2 SV=1
          Length = 123

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALK 58
           T ++KKKE YFP RKYA+K
Sbjct: 104 TEREKKKEMYFPIRKYAIK 122


>sp|Q9SF53|RL351_ARATH 60S ribosomal protein L35-1 OS=Arabidopsis
           thaliana GN=RPL35A PE=2 SV=1
          Length = 123

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 13/19 (68%), Positives = 16/19 (84%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALK 58
           T ++KKKE YFP RKYA+K
Sbjct: 104 TEREKKKEMYFPIRKYAIK 122


>sp|P39741|RL35_YEAST 60S ribosomal protein L35 OS=Saccharomyces
           cerevisiae GN=RPL35A PE=1 SV=1
          Length = 120

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 13/20 (65%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           T KQ+KK+  FP+RKYA+KA
Sbjct: 101 TEKQRKKQIAFPQRKYAIKA 120


>sp|A6NE52|K1875_HUMAN WD repeat-containing protein KIAA1875 OS=Homo
           sapiens GN=KIAA1875 PE=2 SV=2
          Length = 1622

 Score = 30.8 bits (68), Expect = 2.2
 Identities = 15/41 (36%), Positives = 24/41 (58%)
 Frame = -1

Query: 125 TLAILSWLVSETIFRTK*HLIKPSEHIFALGNRSLSSSASM 3
           TL++L WL S+T+F+T+ H   P   I +  N  +SS   +
Sbjct: 578 TLSVLEWLSSKTVFQTEAHSPGPVVAIASTWNSIVSSGGDL 618


>sp|Q9M3D2|RL353_ARATH 60S ribosomal protein L35-3 OS=Arabidopsis
           thaliana GN=RPL35C PE=2 SV=1
          Length = 123

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 12/19 (63%), Positives = 16/19 (84%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALK 58
           T ++KKK+ YFP RKYA+K
Sbjct: 104 TEREKKKDMYFPIRKYAIK 122


>sp|P52817|RL35_BABBO 60S ribosomal protein L35 OS=Babesia bovis
           GN=RPL35 PE=2 SV=1
          Length = 123

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYAL 55
           T+KQ+KK   FPKRKYAL
Sbjct: 104 TIKQRKKCENFPKRKYAL 121


>sp|Q69CJ9|RL35_OPHHA 60S ribosomal protein L35 OS=Ophiophagus
           hannah GN=RPL35 PE=2 SV=3
          Length = 123

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           T KQ++KE  +P RKYA+KA
Sbjct: 104 TKKQQRKERLYPPRKYAVKA 123
tr_hit_id A9SXL8
Definition tr|A9SXL8|A9SXL8_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 20
Score (bit) 37.0
E-value 0.49
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944024|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_L21, 5'
         (200 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9SXL8|A9SXL8_PHYPA Predicted protein OS=Physcomitrella paten...    37   0.49 
tr|Q0UN15|Q0UN15_PHANO Putative uncharacterized protein OS=Phaeo...    36   1.1  
tr|B8CAG2|B8CAG2_THAPS RL35, ribosomal protein 35 60S large ribo...    35   1.9  
tr|B3TLM6|B3TLM6_ELAGV 60S ribosomal protein L35 OS=Elaeis guine...    35   1.9  
tr|B6JWH3|B6JWH3_SCHJP 60S ribosomal protein L35 OS=Schizosaccha...    35   1.9  
tr|A9SPV0|A9SPV0_PHYPA Predicted protein OS=Physcomitrella paten...    35   2.4  
tr|B8P320|B8P320_9APHY 60S ribosomal protein L35 OS=Postia place...    34   4.1  
tr|B7FN27|B7FN27_MEDTR Putative uncharacterized protein OS=Medic...    33   5.4  
tr|A9RF60|A9RF60_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|A9NQ49|A9NQ49_PICSI Putative uncharacterized protein OS=Picea...    33   7.1  
tr|A4RX94|A4RX94_OSTLU Ribosomal protein L35, component of cytos...    33   7.1  
tr|Q6K667|Q6K667_ORYSJ Os02g0503400 protein OS=Oryza sativa subs...    33   9.2  
tr|B8AIB7|B8AIB7_ORYSI Putative uncharacterized protein OS=Oryza...    33   9.2  
tr|B6TIR8|B6TIR8_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    33   9.2  
tr|B6T2K5|B6T2K5_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    33   9.2  
tr|B6T0L1|B6T0L1_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    33   9.2  
tr|B6SZ64|B6SZ64_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    33   9.2  
tr|B6SX73|B6SX73_MAIZE 60S ribosomal protein L35 OS=Zea mays PE=...    33   9.2  
tr|A9NTY0|A9NTY0_PICSI Putative uncharacterized protein OS=Picea...    33   9.2  
tr|A3A759|A3A759_ORYSJ Putative uncharacterized protein OS=Oryza...    33   9.2  
tr|Q5BE02|Q5BE02_EMENI Putative uncharacterized protein OS=Emeri...    33   9.2  
tr|B2VQQ5|B2VQQ5_PYRTR 60S ribosomal protein L35 OS=Pyrenophora ...    33   9.2  

>tr|A9SXL8|A9SXL8_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_189477 PE=4 SV=1
          Length = 123

 Score = 37.0 bits (84), Expect = 0.49
 Identities = 16/20 (80%), Positives = 18/20 (90%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           T KQKKKE YFPKRK+A+KA
Sbjct: 104 TEKQKKKEAYFPKRKFAVKA 123


>tr|Q0UN15|Q0UN15_PHANO Putative uncharacterized protein
           OS=Phaeosphaeria nodorum GN=SNOG_06849 PE=4 SV=2
          Length = 164

 Score = 35.8 bits (81), Expect = 1.1
 Identities = 15/20 (75%), Positives = 19/20 (95%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           T KQKKK+T+FP+RKYA+KA
Sbjct: 145 TEKQKKKQTHFPQRKYAVKA 164


>tr|B8CAG2|B8CAG2_THAPS RL35, ribosomal protein 35 60S large
           ribosomal subunit OS=Thalassiosira pseudonana CCMP1335
           GN=RL35 PE=4 SV=1
          Length = 121

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 14/20 (70%), Positives = 19/20 (95%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           TLKQ+KK+T+FP R+YA+KA
Sbjct: 102 TLKQQKKDTHFPMRRYAVKA 121


>tr|B3TLM6|B3TLM6_ELAGV 60S ribosomal protein L35 OS=Elaeis
           guineensis var. tenera PE=2 SV=1
          Length = 123

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           T +QKKKE YFP RKYA+KA
Sbjct: 104 TERQKKKEMYFPMRKYAIKA 123


>tr|B6JWH3|B6JWH3_SCHJP 60S ribosomal protein L35
           OS=Schizosaccharomyces japonicus yFS275 GN=SJAG_00749
           PE=4 SV=1
          Length = 122

 Score = 35.0 bits (79), Expect = 1.9
 Identities = 16/20 (80%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           TLKQ KKE YFP RK+ALKA
Sbjct: 103 TLKQLKKERYFPLRKFALKA 122


>tr|A9SPV0|A9SPV0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_214555 PE=4 SV=1
          Length = 123

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/20 (75%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           T KQKKKE YFP RK+A+KA
Sbjct: 104 TEKQKKKEAYFPMRKFAVKA 123


>tr|B8P320|B8P320_9APHY 60S ribosomal protein L35 OS=Postia placenta
           Mad-698-R GN=POSPLDRAFT_126854 PE=4 SV=1
          Length = 126

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 14/20 (70%), Positives = 18/20 (90%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           TLKQ+KK+ +FP RKYA+KA
Sbjct: 106 TLKQRKKDIHFPLRKYAVKA 125


>tr|B7FN27|B7FN27_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 123

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           T ++KKKE YFP RKYA+KA
Sbjct: 104 TEREKKKEIYFPVRKYAIKA 123


>tr|A9RF60|A9RF60_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_62237 PE=4 SV=1
          Length = 123

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/20 (70%), Positives = 17/20 (85%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALKA 61
           T KQ+KKE YFP RK+A+KA
Sbjct: 104 TEKQEKKEAYFPMRKFAVKA 123


>tr|A9NQ49|A9NQ49_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 123

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 14/19 (73%), Positives = 16/19 (84%)
 Frame = +2

Query: 2   TLKQKKKETYFPKRKYALK 58
           T +QKKKE YFP RKYA+K
Sbjct: 104 TERQKKKEMYFPMRKYAVK 122