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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944041
Clone id YMU02A01NGRL0004_M19
Library
Length 186
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_M19. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTACAAGTTGTATTCAGAGAAAAACCAGTGGAAAATCCGCGGGTCTTTGCCGATACACTA
CACGTAAAAATCGTCGTAACACACCCGCTCGGCTGGAGTTAGAGAAGTATTGCTTCCATT
GTCACAAGCATACCTTGCACAAAGAGTCGAAGAAACAAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id Q85FK1
Definition sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS=Adiantum capillus-veneris
Align length 49
Score (bit) 109.0
E-value 4.0e-24
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944041|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_M19, 5'
         (149 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic OS...   109   4e-24
sp|B1VKE2|RK33_CRYJA 50S ribosomal protein L33, chloroplastic OS...    72   9e-13
sp|B2XWM6|RK33_FAGEA 50S ribosomal protein L33, chloroplastic OS...    69   1e-11
sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic OS...    67   2e-11
sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic OS...    67   4e-11
sp|A4QKV2|RK33_CRUWA 50S ribosomal protein L33, chloroplastic OS...    67   4e-11
sp|A4QKL3|RK33_CAPBU 50S ribosomal protein L33, chloroplastic OS...    67   4e-11
sp|A4GYT2|RK33_POPTR 50S ribosomal protein L33, chloroplastic OS...    66   6e-11
sp|Q14FD6|RK33_POPAL 50S ribosomal protein L33, chloroplastic OS...    66   6e-11
sp|Q2L929|RK33_GOSHI 50S ribosomal protein L33, chloroplastic OS...    66   6e-11
sp|A0ZZ56|RK33_GOSBA 50S ribosomal protein L33, chloroplastic OS...    66   6e-11
sp|Q09MF7|RK33_CITSI 50S ribosomal protein L33, chloroplastic OS...    66   6e-11
sp|A4QJV2|RK33_OLIPU 50S ribosomal protein L33, chloroplastic OS...    65   8e-11
sp|A4QLV4|RK33_NASOF 50S ribosomal protein L33, chloroplastic OS...    65   8e-11
sp|B1NWH1|RK33_MANES 50S ribosomal protein L33, chloroplastic OS...    65   8e-11
sp|B1A956|RK33_CARPA 50S ribosomal protein L33, chloroplastic OS...    65   8e-11
sp|A4QKC6|RK33_BARVE 50S ribosomal protein L33, chloroplastic OS...    65   8e-11
sp|P56796|RK33_ARATH 50S ribosomal protein L33, chloroplastic OS...    65   8e-11
sp|A4QK39|RK33_ARAHI 50S ribosomal protein L33, chloroplastic OS...    65   8e-11
sp|Q6YXM3|RK33_PHYPA 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|Q09WZ6|RK33_MORIN 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|A4QLL5|RK33_LOBMA 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|Q06GX6|RK33_DRIGR 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|A6MM57|RK33_BUXMI 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|Q0ZIZ9|RK33_VITVI 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|Q32RT8|RK33_STAPU 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|P41612|RK33_PINTH 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|Q7GUD1|RK33_PINKO 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|P0C457|RK33_ORYSJ 50S ribosomal protein L33, chloroplastic OS...    65   1e-10
sp|P0C456|RK33_ORYSI 50S ribosomal protein L33, chloroplastic OS...    65   1e-10

>sp|Q85FK1|RK33_ADICA 50S ribosomal protein L33, chloroplastic
           OS=Adiantum capillus-veneris GN=rpl33 PE=2 SV=2
          Length = 66

 Score =  109 bits (273), Expect = 4e-24
 Identities = 49/49 (100%), Positives = 49/49 (100%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKES 149
           TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKES
Sbjct: 16  TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKES 64


>sp|B1VKE2|RK33_CRYJA 50S ribosomal protein L33, chloroplastic
           OS=Cryptomeria japonica GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 72.0 bits (175), Expect = 9e-13
 Identities = 31/48 (64%), Positives = 38/48 (79%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC Q   + KS G+ RYTTRKNRRNTP RLEL+K+C +C+KHT+H E
Sbjct: 16  TSCTQDSVNKKSPGISRYTTRKNRRNTPLRLELKKFCPYCYKHTIHGE 63


>sp|B2XWM6|RK33_FAGEA 50S ribosomal protein L33, chloroplastic
           OS=Fagopyrum esculentum subsp. ancestrale GN=rpl33 PE=3
           SV=1
          Length = 66

 Score = 68.6 bits (166), Expect = 1e-11
 Identities = 27/48 (56%), Positives = 39/48 (81%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC+++  + +S G+ RY T+KNRRNTP+RLEL K+C +C+KHT+H E
Sbjct: 16  TSCVRKNVNKESRGISRYITQKNRRNTPSRLELRKFCPYCYKHTIHGE 63


>sp|A4QLC7|RK33_LEPVR 50S ribosomal protein L33, chloroplastic
           OS=Lepidium virginicum GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 67.4 bits (163), Expect = 2e-11
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC++     +SAG+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 16  TSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCAYCYKHTIHGE 63


>sp|A4QL40|RK33_DRANE 50S ribosomal protein L33, chloroplastic
           OS=Draba nemorosa GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC++     +SAG+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 16  TSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63


>sp|A4QKV2|RK33_CRUWA 50S ribosomal protein L33, chloroplastic
           OS=Crucihimalaya wallichii GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC++     +SAG+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 16  TSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63


>sp|A4QKL3|RK33_CAPBU 50S ribosomal protein L33, chloroplastic
           OS=Capsella bursa-pastoris GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 66.6 bits (161), Expect = 4e-11
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC++     +SAG+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 16  TSCVRNDIKKESAGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63


>sp|A4GYT2|RK33_POPTR 50S ribosomal protein L33, chloroplastic
           OS=Populus trichocarpa GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 26/48 (54%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC+++  + KS G+ RY T+KNR N P+RLEL K+C +C+KHT+H E
Sbjct: 16  TSCVRKSVNKKSIGISRYITQKNRHNRPSRLELRKFCPYCYKHTIHGE 63


>sp|Q14FD6|RK33_POPAL 50S ribosomal protein L33, chloroplastic
           OS=Populus alba GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 26/48 (54%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC+++  + KS G+ RY T+KNR N P+RLEL K+C +C+KHT+H E
Sbjct: 16  TSCVRKSVNKKSIGISRYITQKNRHNRPSRLELRKFCPYCYKHTIHGE 63


>sp|Q2L929|RK33_GOSHI 50S ribosomal protein L33, chloroplastic
           OS=Gossypium hirsutum GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 26/48 (54%), Positives = 38/48 (79%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC++   + +S G+ RY T+KNR NTP+RLEL+K+C +C+KHT+H E
Sbjct: 16  TSCVRNGVNKESTGISRYITQKNRHNTPSRLELKKFCPYCYKHTIHGE 63
tr_hit_id B7ZIQ6
Definition tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria davidiana
Align length 48
Score (bit) 68.6
E-value 2.0e-10
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944041|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_M19, 5'
         (149 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria david...    69   2e-10
tr|Q4FG88|Q4FG88_TYPLA 50S ribosomal protein L33 (Fragment) OS=T...    68   3e-10
tr|B7UCF6|B7UCF6_9POAL Rpl33 OS=Typha domingensis PE=4 SV=1            68   3e-10
tr|Q4FG87|Q4FG87_9ASPA 50S ribosomal protein L33 (Fragment) OS=Y...    66   8e-10
tr|Q4FG91|Q4FG91_GINBI 50S ribosomal protein L33 (Fragment) OS=G...    66   1e-09
tr|B8HWY6|B8HWY6_9CHRO Ribosomal protein L33 OS=Cyanothece sp. P...    65   1e-09
tr|B3IWG9|B3IWG9_TAKLE Ribosomal protein L33 OS=Takakia lepidozi...    65   1e-09
tr|B7KBE3|B7KBE3_9CHRO Ribosomal protein L33 OS=Cyanothece sp. P...    65   2e-09
tr|B5AH23|B5AH23_9ROSI Ribosomal protein L33 OS=Gonystylus banca...    65   2e-09
tr|Q4FG89|Q4FG89_RANMC 50S ribosomal protein L33 (Fragment) OS=R...    65   2e-09
tr|A7QCX0|A7QCX0_VITVI 50S ribosomal protein L33 OS=Vitis vinife...    65   2e-09
tr|A9QBB4|A9QBB4_ELAOL 50S ribosomal protein L33 (Fragment) OS=E...    64   3e-09
tr|Q4FG92|Q4FG92_ACOAM 50S ribosomal protein L33 (Fragment) OS=A...    64   4e-09
tr|A9QC76|A9QC76_TRACE 50S ribosomal protein L33 (Fragment) OS=T...    64   4e-09
tr|B2J0D4|B2J0D4_NOSP7 Ribosomal protein L33 OS=Nostoc punctifor...    64   5e-09
tr|B0LP34|B0LP34_9CARY 50S ribosomal protein L33 OS=Silene aegyp...    64   5e-09
tr|A9QBK7|A9QBK7_MUSAC 50S ribosomal protein L33 (Fragment) OS=M...    64   5e-09
tr|A0YR61|A0YR61_9CYAN 50S ribosomal protein L33 OS=Lyngbya sp. ...    63   6e-09
tr|B4Y1W1|B4Y1W1_AGRGI Ribosomal protein L33 OS=Agrostemma githa...    63   8e-09
tr|B8R469|B8R469_TRISU Ribosomal protein L33 OS=Trifolium subter...    62   1e-08
tr|A8YF81|A8YF81_MICAE 50S ribosomal protein L33 OS=Microcystis ...    62   1e-08
tr|B6RRU3|B6RRU3_9CARY Ribosomal protein L33 OS=Eudianthe laeta ...    62   1e-08
tr|B0LNQ8|B0LNQ8_SILLA 50S ribosomal protein L33 OS=Silene latif...    62   1e-08
tr|A9QBT0|A9QBT0_PASBI 50S ribosomal protein L33 (Fragment) OS=P...    62   1e-08
tr|Q4FG90|Q4FG90_NUPAD 50S ribosomal protein L33 (Fragment) OS=N...    62   2e-08
tr|B4Y1V9|B4Y1V9_9CARY Ribosomal protein L33 OS=Atocion rupestre...    62   2e-08
tr|B4Y1V7|B4Y1V7_9CARY Ribosomal protein L33 OS=Lychnis flos-cuc...    62   2e-08
tr|B4Y1V5|B4Y1V5_9CARY Ribosomal protein L33 OS=Lychnis flos-jov...    62   2e-08
tr|B4Y1V3|B4Y1V3_9CARY Ribosomal protein L33 OS=Petrocoptis pyre...    62   2e-08
tr|B0LP55|B0LP55_9CARY 50S ribosomal protein L33 OS=Silene atoci...    62   2e-08

>tr|B7ZIQ6|B7ZIQ6_KETDA Ribosomal protein L33 OS=Keteleeria
           davidiana GN=rpl33 PE=4 SV=1
          Length = 68

 Score = 68.6 bits (166), Expect = 2e-10
 Identities = 30/48 (62%), Positives = 36/48 (75%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC Q     K  G+ RYTTRKNRRNTP RLEL+K+C +C+KHT+H E
Sbjct: 16  TSCTQDSVYKKFPGISRYTTRKNRRNTPIRLELKKFCPYCYKHTIHGE 63


>tr|Q4FG88|Q4FG88_TYPLA 50S ribosomal protein L33 (Fragment)
           OS=Typha latifolia GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC++   + +S G+ RY T+KNR NTP+RLEL K+C +CHKHT+H E
Sbjct: 16  TSCVRNGVNKESPGISRYITQKNRHNTPSRLELRKFCRYCHKHTIHGE 63


>tr|B7UCF6|B7UCF6_9POAL Rpl33 OS=Typha domingensis PE=4 SV=1
          Length = 66

 Score = 67.8 bits (164), Expect = 3e-10
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC++   + +S G+ RY T+KNR NTP+RLEL K+C +CHKHT+H E
Sbjct: 16  TSCVRNGVNKESPGISRYITQKNRHNTPSRLELRKFCRYCHKHTIHGE 63


>tr|Q4FG87|Q4FG87_9ASPA 50S ribosomal protein L33 (Fragment)
           OS=Yucca schidigera GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 66.2 bits (160), Expect = 8e-10
 Identities = 27/48 (56%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSCIQ   + +S G+ RY T+KNR NTP+RL+L K+C +CHKHT++ E
Sbjct: 16  TSCIQNGVNKESPGISRYITQKNRHNTPSRLDLRKFCRYCHKHTIYGE 63


>tr|Q4FG91|Q4FG91_GINBI 50S ribosomal protein L33 (Fragment)
           OS=Ginkgo biloba GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 29/48 (60%), Positives = 35/48 (72%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC Q     K  G+ RYTTRKNRRNTP R EL+K+C +C+KHT+H E
Sbjct: 16  TSCNQDSVDKKFPGVSRYTTRKNRRNTPIRSELKKFCPYCYKHTIHGE 63


>tr|B8HWY6|B8HWY6_9CHRO Ribosomal protein L33 OS=Cyanothece sp. PCC
           7425 GN=Cyan7425_0903 PE=4 SV=1
          Length = 62

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 28/38 (73%), Positives = 33/38 (86%)
 Frame = +3

Query: 33  KSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           +SAG+ RYTT KNRRNT ARLEL K+C HC+KHT+HKE
Sbjct: 23  RSAGVSRYTTTKNRRNTTARLELNKFCPHCNKHTVHKE 60


>tr|B3IWG9|B3IWG9_TAKLE Ribosomal protein L33 OS=Takakia
           lepidozioides GN=rpl33 PE=4 SV=1
          Length = 65

 Score = 65.5 bits (158), Expect = 1e-09
 Identities = 30/48 (62%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC Q     K  G+ RYTT+KNRRNTP RLEL+K+C +C+KHT+HKE
Sbjct: 16  TSCAQNGEKIK-LGVSRYTTKKNRRNTPTRLELKKFCPYCNKHTIHKE 62


>tr|B7KBE3|B7KBE3_9CHRO Ribosomal protein L33 OS=Cyanothece sp. PCC
           7424 GN=PCC7424_3097 PE=4 SV=1
          Length = 64

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 27/38 (71%), Positives = 33/38 (86%)
 Frame = +3

Query: 33  KSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           +SAG+ RYTT KNRRNT  RLEL+K+C HC+KHT+HKE
Sbjct: 25  RSAGVSRYTTSKNRRNTTGRLELKKFCTHCNKHTVHKE 62


>tr|B5AH23|B5AH23_9ROSI Ribosomal protein L33 OS=Gonystylus bancanus
           GN=rpl33 PE=4 SV=1
          Length = 66

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 26/48 (54%), Positives = 37/48 (77%)
 Frame = +3

Query: 3   TSCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           TSC++   + +S G+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 16  TSCVRNGINKESTGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63


>tr|Q4FG89|Q4FG89_RANMC 50S ribosomal protein L33 (Fragment)
           OS=Ranunculus macranthus GN=rpl33 PE=3 SV=1
          Length = 66

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 26/47 (55%), Positives = 36/47 (76%)
 Frame = +3

Query: 6   SCIQRKTSGKSAGLCRYTTRKNRRNTPARLELEKYCFHCHKHTLHKE 146
           SC++   + KS G+ RY T+KNR NTP+RLEL K+C +C+KHT+H E
Sbjct: 17  SCVRNDINKKSRGISRYITQKNRHNTPSRLELRKFCPYCYKHTIHGE 63