DK944046 |
Clone id |
YMU02A01NGRL0004_M24 |
Library |
YMU02 |
Length |
628 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_M24. 5' end sequence. |
Accession |
DK944046 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL128Contig1 |
Sequence |
ACCACACTCAACGGTTCTTCCCGAGCGTTTCTAATCCCCAGCCTTCCTGCGTGTTTGCAA GCTATGGAAGGTGTAGTGAGCGTGAGGGCGGCCACACCCACAGCCCTCTGTGTATCTACA ACGCCGTCCCCTGCGTCGTCTTCGCGCTCGTTGTCATACCGCCTCCCCGCCATCAGAGGA TCCCTTAAGCATCAGGGATGCAACACATCTAGCAGCTCCTCGCTTCAGGAGAGCCTACAG CGCATGGCTACCAAGATCACTCAAAACCCTACCCTTCGCAATGCTGCTTTCTTTGCGATG AATGCCCTCTGGGCAGTGCCAGCCATAGCTGCAGAAGTCGCAGCAGAGGCAGAAGAGAAG GGAAAGATTTTCGATTTTAATCTCACCCTCCCCATTATCGCGGCAGAGTTCCTGTTGCTC ATGGTGACTTTGGACAACATATGGTTTAAGCCTGTGGCCAAGGTTATGGATGACAGAGAT GAAGCCATCAGGCAGAAGCTTATGAGTGTGCGCGACAATTCCGACGAGATCAAGAAGCTG CAAGAGCAGGCTGAGGCGATCCTCAAGGCCGCACGTGCAGAGACCACGGCGGAGCTCAAC AAGATGAAGAGGGAGACGGCAGCAAAGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P31853 |
Definition |
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea |
Align length |
87 |
Score (bit) |
106.0 |
E-value |
9.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944046|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_M24, 5' (628 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spi... 106 9e-23 sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Por... 65 2e-10 sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Por... 65 4e-10 sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Gui... 64 5e-10 sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cya... 62 2e-09 sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. ... 60 7e-09 sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. ... 59 2e-08 sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odo... 57 6e-08 sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (stra... 57 8e-08 sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Gal... 57 1e-07 sp|Q02852|ATPX_ANTSP ATP synthase B' chain, chloroplastic OS=Ant... 57 1e-07 sp|Q40608|ATPX_OCHNE ATP synthase B' chain, chloroplastic OS=Och... 54 9e-07 sp|P27183|ATPX_SYNY3 ATP synthase B' chain OS=Synechocystis sp. ... 52 2e-06 sp|P48085|ATPX_CYAPA ATP synthase B' chain, cyanelle OS=Cyanopho... 52 3e-06 sp|P21904|ATPF_PROMO ATP synthase B chain, sodium ion specific O... 42 0.003 sp|P20601|ATPF_BACME ATP synthase B chain OS=Bacillus megaterium... 42 0.003 sp|P41172|ATPF_THIFE ATP synthase B chain OS=Thiobacillus ferroo... 35 0.32 sp|Q49Z54|ATPF_STAS1 ATP synthase B chain OS=Staphylococcus sapr... 34 0.54 sp|Q7A0C4|ATPF_STAAW ATP synthase B chain OS=Staphylococcus aure... 31 4.6 sp|Q6G7K3|ATPF_STAAS ATP synthase B chain OS=Staphylococcus aure... 31 4.6 sp|Q6GEW8|ATPF_STAAR ATP synthase B chain OS=Staphylococcus aure... 31 4.6 sp|Q7A4E7|ATPF_STAAN ATP synthase B chain OS=Staphylococcus aure... 31 4.6 sp|Q99SF1|ATPF_STAAM ATP synthase B chain OS=Staphylococcus aure... 31 4.6 sp|Q5HE93|ATPF_STAAC ATP synthase B chain OS=Staphylococcus aure... 31 4.6 sp|Q15858|SCN9A_HUMAN Sodium channel protein type 9 subunit alph... 31 6.0 sp|Q28644|SCN9A_RABIT Sodium channel protein type 9 subunit alph... 30 7.8 sp|Q62205|SCN9A_MOUSE Sodium channel protein type 9 subunit alph... 30 7.8
>sp|P31853|ATPX_SPIOL ATP synthase B' chain, chloroplastic OS=Spinacia oleracea GN=ATPG PE=1 SV=2 Length = 222
Score = 106 bits (265), Expect = 9e-23 Identities = 50/87 (57%), Positives = 67/87 (77%) Frame = +1
Query: 358 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 537 K +FDFNLTLPII AEFL LM LD I++ P+ MD RD +I+++L V+D S E+K+ Sbjct: 80 KASLFDFNLTLPIIMAEFLFLMFALDKIYYTPLGDFMDKRDASIKEQLSGVKDTSSEVKQ 139
Query: 538 LQEQAEAILKAARAETTAELNKMKRET 618 L+EQA A+++AARAE +A LNKMK+ET Sbjct: 140 LEEQANAVMRAARAEISAALNKMKKET 166
>sp|P51245|ATPX_PORPU ATP synthase B' chain, chloroplastic OS=Porphyra purpurea GN=atpG PE=3 SV=1 Length = 158
Score = 65.5 bits (158), Expect = 2e-10 Identities = 32/86 (37%), Positives = 55/86 (63%) Frame = +1
Query: 358 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 537 +G +FDFN TLP++A +FL+LM+ L+ I++KPV K++D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLILMLLLNTIFYKPVTKILDERDEYIRTTLTTASSMLVKADE 72
Query: 538 LQEQAEAILKAARAETTAELNKMKRE 615 L + E L AR + A++ +++ Sbjct: 73 LAAKYEEDLSKARRDAQAKIAASQKD 98
>sp|Q1XDP2|ATPX_PORYE ATP synthase B' chain, chloroplastic OS=Porphyra yezoensis GN=atpG PE=3 SV=1 Length = 156
Score = 64.7 bits (156), Expect = 4e-10 Identities = 34/86 (39%), Positives = 52/86 (60%) Frame = +1
Query: 358 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 537 +G +FDFN TLP++A +FL LMV L+ I++KPV KV+D+RDE IR L + + + Sbjct: 13 EGGLFDFNGTLPLMALQFLTLMVLLNTIFYKPVTKVLDERDEYIRTTLTTASSMLVKADE 72
Query: 538 LQEQAEAILKAARAETTAELNKMKRE 615 L + E L AR ++ ++E Sbjct: 73 LAAKYEEDLSEARRNAQLKIASSQKE 98
>sp|O78478|ATPX_GUITH ATP synthase B' chain, chloroplastic OS=Guillardia theta GN=atpG PE=3 SV=1 Length = 163
Score = 64.3 bits (155), Expect = 5e-10 Identities = 32/86 (37%), Positives = 53/86 (61%) Frame = +1
Query: 358 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 537 +G +FDFN TLP++A + LL MV L+ +++ PVAKV+D+R+E IR+ L D + + Sbjct: 18 EGGLFDFNATLPLMAVQILLFMVILNAVFYNPVAKVLDEREEYIRKNLTQASDILAKAEA 77
Query: 538 LQEQAEAILKAARAETTAELNKMKRE 615 + +Q E L R E ++ ++E Sbjct: 78 ITKQYEKDLAQERREAQLIISVAQKE 103
>sp|Q9TM29|ATPX_CYACA ATP synthase B' chain, chloroplastic OS=Cyanidium caldarium GN=atpG PE=3 SV=1 Length = 157
Score = 62.0 bits (149), Expect = 2e-09 Identities = 29/86 (33%), Positives = 56/86 (65%) Frame = +1
Query: 361 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKL 540 G +FDF+ TLP++A++FLL+M+ LD ++KP+ KV+ DR+ I + L S S++ K+ Sbjct: 15 GGLFDFDATLPLMASQFLLIMLILDITFYKPINKVLKDRENYILKTLESATQISEKTKET 74
Query: 541 QEQAEAILKAARAETTAELNKMKRET 618 + E ++ ++ E+ ++ +K +T Sbjct: 75 LARYEEVILKSKKESQQLIDSIKTKT 100
>sp|Q05367|ATPX_SYNP1 ATP synthase B' chain OS=Synechococcus sp. (strain PCC 6716) GN=atpG PE=3 SV=1 Length = 159
Score = 60.5 bits (145), Expect = 7e-09 Identities = 29/83 (34%), Positives = 49/83 (59%) Frame = +1
Query: 367 IFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKLQE 546 +FDF+ TLP++A +FL+L V L+ + +KP+ + +D+RDE IR L ++ + +L Sbjct: 22 MFDFDATLPLMAVQFLILTVILNALLYKPLGQALDNRDEYIRTNLQQAKERLQQATELAN 81
Query: 547 QAEAILKAARAETTAELNKMKRE 615 Q E L R E A + + + E Sbjct: 82 QYEQELAYTRREAQAIIEEARAE 104
>sp|P08446|ATPX_SYNP6 ATP synthase B' chain OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=atpG PE=3 SV=1 Length = 158
Score = 59.3 bits (142), Expect = 2e-08 Identities = 29/86 (33%), Positives = 51/86 (59%) Frame = +1
Query: 358 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 537 +G +FD + TLP++A + L+L+ L+ +++KP KV+DDRD+ +R + E+K Sbjct: 16 EGGLFDLDATLPLMAVQILVLVFLLNAVFYKPFGKVLDDRDQFVRGGRQDAKARLAEVKA 75
Query: 538 LQEQAEAILKAARAETTAELNKMKRE 615 L Q E L A R ++ A + + + E Sbjct: 76 LTAQYEQELAATRKQSQALIAEAQTE 101
>sp|Q00823|ATPX_ODOSI ATP synthase B' chain, chloroplastic OS=Odontella sinensis GN=atpG PE=3 SV=1 Length = 156
Score = 57.4 bits (137), Expect = 6e-08 Identities = 29/84 (34%), Positives = 46/84 (54%) Frame = +1
Query: 361 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKL 540 G +FD N TLP++A +FLLLMV L+ I + P+ ++++R E I KL + + +L Sbjct: 17 GGLFDINATLPLVAIQFLLLMVLLNVILYSPLLTIIEERKEYILNKLAKASEILSQANEL 76
Query: 541 QEQAEAILKAARAETTAELNKMKR 612 Q E L R E E+ ++ Sbjct: 77 TAQYEQELNTVRKEAQLEITNSQK 100
>sp|P12410|ATPX_ANASP ATP synthase B' chain OS=Anabaena sp. (strain PCC 7120) GN=atpG PE=3 SV=1 Length = 163
Score = 57.0 bits (136), Expect = 8e-08 Identities = 32/96 (33%), Positives = 52/96 (54%), Gaps = 7/96 (7%) Frame = +1
Query: 358 KGKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKK 537 +G +FD + TLP++A +FLLL + L+ +KP+ K +D R+E +R + ++ + +K Sbjct: 16 EGGLFDLDATLPLMAIQFLLLALILNATLYKPLGKAIDGRNEYVRNNQLEAQERLSKAEK 75
Query: 538 LQEQAEAILKAAR-------AETTAELNKMKRETAA 624 L E E L AR A+ AE K+ E A Sbjct: 76 LAEAYEQELAGARRQAQTIIADAQAEAQKIAAEKVA 111
>sp|P35012|ATPX_GALSU ATP synthase B' chain, chloroplastic OS=Galdieria sulphuraria GN=atpG PE=3 SV=1 Length = 157
Score = 56.6 bits (135), Expect = 1e-07 Identities = 30/74 (40%), Positives = 46/74 (62%) Frame = +1
Query: 361 GKIFDFNLTLPIIAAEFLLLMVTLDNIWFKPVAKVMDDRDEAIRQKLMSVRDNSDEIKKL 540 G +FDF+ TL IA EFLLL L+ I+++P++KV+D R++ IR+ L D+ +L Sbjct: 15 GGLFDFDATLSFIALEFLLLTSVLNLIYYQPISKVIDSREDYIRENLNKASLYLDQANEL 74
Query: 541 QEQAEAILKAARAE 582 ++ E L AR E Sbjct: 75 TKKYELELITARKE 88
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RKV9 |
Definition |
tr|A9RKV9|A9RKV9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
117 |
Score (bit) |
144.0 |
E-value |
6.0e-33 |
Report |
|