DK944048
Clone id YMU02A01NGRL0004_N02
Library
Length 362
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_N02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence
GCATACTGAGAACACAAATGAACTTTTTAACATGTCGTGCTCTGCATTCTTCACTGGTCA
GAAGTATCACTTCCGTTTTTCTCATCACCATGGTCCTTTAGCGTCGAGAATCACTAATCA
AGCCCCACAGTACATTTGATCCCCATTACGATTCTCATCACCATGATCCTTGGGCGTCGA
TATAATCACTTATCAGCCCCACACATAGTACCATTGCATGTATCTCTGGTACCATGGGTC
ATATTTGACCTATGAGGATGATAATTAATCTATTTAACTTGTAAAAAAAGTTTCCCAAAA
AAAAACAGAGAAAAAAAAAGGGGGTGAAATTTACACAAAAAAAAAAAACCCGGGGGAAAA
AA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944048|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_N02, 5'
(296 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done

***** No hits found ******


tr_hit_id B4KX79
Definition tr|B4KX79|B4KX79_DROMO GI12592 OS=Drosophila mojavensis
Align length 14
Score (bit) 30.0
E-value 1.6
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944048|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_N02, 5'
(296 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B4KX79|B4KX79_DROMO GI12592 OS=Drosophila mojavensis GN=GI125... 30 1.6
tr|B0CV46|B0CV46_LACBS Predicted protein OS=Laccaria bicolor (st... 33 7.0
tr|B4LDY4|B4LDY4_DROVI GJ13566 OS=Drosophila virilis GN=GJ13566 ... 33 9.2

>tr|B4KX79|B4KX79_DROMO GI12592 OS=Drosophila mojavensis GN=GI12592
PE=4 SV=1
Length = 323

Score = 30.0 bits (66), Expect(2) = 1.6
Identities = 10/14 (71%), Positives = 11/14 (78%)
Frame = +3

Query: 126 HSTFDPHYDSHHHD 167
HS D HYD+HHHD
Sbjct: 42 HSHHDSHYDAHHHD 55



Score = 24.3 bits (51), Expect(2) = 1.6
Identities = 8/10 (80%), Positives = 9/10 (90%)
Frame = +3

Query: 147 YDSHHHDPWA 176
+DSHHHDP A
Sbjct: 77 HDSHHHDPHA 86


>tr|B0CV46|B0CV46_LACBS Predicted protein OS=Laccaria bicolor
(strain S238N-H82) GN=LACBIDRAFT_322799 PE=4 SV=1
Length = 169

Score = 33.1 bits (74), Expect = 7.0
Identities = 13/19 (68%), Positives = 14/19 (73%)
Frame = +2

Query: 50 FTGQKYHFRFSHHHGPLAS 106
FTGQ YHFR +H GPL S
Sbjct: 84 FTGQGYHFRIPYHPGPLGS 102


>tr|B4LDY4|B4LDY4_DROVI GJ13566 OS=Drosophila virilis GN=GJ13566
PE=4 SV=1
Length = 274

Score = 32.7 bits (73), Expect = 9.2
Identities = 16/49 (32%), Positives = 29/49 (59%), Gaps = 9/49 (18%)
Frame = -2

Query: 127 WGLISDSRR*RTMVMRKTEVILLTSEECRARHVKK---------FICVL 8
WGL+ R RT +++K +VI++++ EC A +K+ FIC++
Sbjct: 162 WGLVDFVHRRRTDILQKLDVIVMSNIECSAEILKRAPGKFFTSSFICLM 210