DK944051 |
Clone id |
YMU02A01NGRL0004_N06 |
Library |
YMU02 |
Length |
542 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_N06. 5' end sequence. |
Accession |
DK944051 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL4185Contig1 |
Sequence |
GTCGGGAAACATGAGTTAAAAGAGTTTTGGACTGAAAACGCTGTGCTTGTTCCTCTTCTC TTCTGCGCGTTGAGGCTGCCGGGGAGCACGGTCCGCGCACAAGTACAAGAACATGGATTG GCAGGGTCAGCAATTGGCAGAGCAGATAATGCAGTATGCGCTTCTGCTGGCAGCGTTGGT TGCTTTTGCGGTAGGATACATGATGGGTTCCTTCCAACTTATGATTCAAGTATACGGTGC CCTTGTAGTTGTTGTTCTACTTGTCGTCGTACCCGACTGGGGCTGCTTCAATCGGCACCC CATGCAGTGGCTCGATCCAAAGGTTGCAGCTGCCGAGTCCACCTCCAAGAGCAAGCCGCC GCAGGTCACTGCCACAAAGAAGCCCTCCTCCAAGGCCTCCAAGAAATAGTACAAGGTAGA TCCTGGATACTTTGATGAGGACTCATTATTGTATCATTGACTGTTTTCATATCCTTGATC ATTCTCTTAAAGAATTTTACTCTTTTGAGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA AA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q944J0 |
Definition |
sp|Q944J0|SPCS1_ARATH Probable signal peptidase complex subunit 1 OS=Arabidopsis thaliana |
Align length |
86 |
Score (bit) |
60.8 |
E-value |
3.0e-09 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NJV0 |
Definition |
tr|A9NJV0|A9NJV0_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
90 |
Score (bit) |
73.2 |
E-value |
7.0e-12 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944051|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_N06, 5' (510 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NJV0|A9NJV0_PICSI Putative uncharacterized protein OS=Picea... 73 7e-12 tr|A9TQ11|A9TQ11_PHYPA Predicted protein (Fragment) OS=Physcomit... 73 9e-12 tr|Q2QS62|Q2QS62_ORYSJ Microsomal signal peptidase 12 kDa subuni... 71 3e-11 tr|Q0INK3|Q0INK3_ORYSJ Os12g0438900 protein OS=Oryza sativa subs... 70 5e-11 tr|B8BPF7|B8BPF7_ORYSI Putative uncharacterized protein OS=Oryza... 70 5e-11 tr|A3CGZ3|A3CGZ3_ORYSJ cDNA, clone: J065204C04, full insert sequ... 70 5e-11 tr|Q0WSH4|Q0WSH4_ARATH Putative uncharacterized protein At4g4004... 70 6e-11 tr|Q84MC9|Q84MC9_ARATH At4g40042 OS=Arabidopsis thaliana PE=4 SV=1 69 1e-10 tr|B6SIK6|B6SIK6_MAIZE Signal peptidase complex subunit 1 OS=Zea... 59 1e-07 tr|B6SJA3|B6SJA3_MAIZE Signal peptidase complex subunit 1 OS=Zea... 58 2e-07 tr|A9TU76|A9TU76_PHYPA Predicted protein (Fragment) OS=Physcomit... 55 3e-06 tr|B3S097|B3S097_TRIAD Putative uncharacterized protein OS=Trich... 55 3e-06 tr|B7G343|B7G343_PHATR Signal peptidase 12 kDa subunit OS=Phaeod... 48 3e-04 tr|A7SCR5|A7SCR5_NEMVE Predicted protein OS=Nematostella vectens... 46 0.001 tr|B8C1V5|B8C1V5_THAPS Predicted protein OS=Thalassiosira pseudo... 45 0.002 tr|A8J8S8|A8J8S8_CHLRE Signal peptidase, 12 kDa subunit OS=Chlam... 45 0.002 tr|B6NH48|B6NH48_BRAFL Putative uncharacterized protein OS=Branc... 45 0.002 tr|B5M729|B5M729_9ACAR Microsomal signal peptidase 12 kDa subuni... 45 0.003 tr|A9ULB3|A9ULB3_XENTR Signal peptidase complex subunit 1 homolo... 44 0.003 tr|A9JSP1|A9JSP1_XENTR Putative uncharacterized protein OS=Xenop... 44 0.003 tr|B0DHE8|B0DHE8_LACBS Predicted protein OS=Laccaria bicolor (st... 42 0.013 tr|A8PBP6|A8PBP6_COPC7 Predicted protein OS=Coprinopsis cinerea ... 42 0.013 tr|B6PW32|B6PW32_BRAFL Putative uncharacterized protein (Fragmen... 42 0.017 tr|Q4PM48|Q4PM48_IXOSC Microsomal signal peptidase 12 kDa subuni... 41 0.038 tr|B7PTZ5|B7PTZ5_IXOSC Signal peptidase 12kDa subunit, putative ... 41 0.038 tr|A9RB35|A9RB35_PHYPA Predicted protein OS=Physcomitrella paten... 40 0.065 tr|B5KFM9|B5KFM9_TAEGU Putative signal peptidase 12 kDa OS=Taeni... 40 0.085 tr|A4RM29|A4RM29_MAGGR Putative uncharacterized protein OS=Magna... 40 0.085 tr|B8MC10|B8MC10_9EURO Microsomal signal peptidase Spc12, putati... 39 0.15 tr|A7UWR4|A7UWR4_NEUCR Putative uncharacterized protein OS=Neuro... 38 0.32
>tr|A9NJV0|A9NJV0_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 99
Score = 73.2 bits (178), Expect = 7e-12 Identities = 37/90 (41%), Positives = 47/90 (52%), Gaps = 3/90 (3%) Frame = +2
Query: 113 MDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWGCFN 292 MDWQGQ+L+E +MQ GY+M SF+ M+ +Y A PDW FN Sbjct: 1 MDWQGQKLSEMLMQIMLLVSAVVAFVAGYVMSSFKNMLIIYAASVGITLLTTVPDWPFFN 60
Query: 293 RHPMQWLDPKVAAAESTSKSKP---PQVTA 373 R+P+QWLDPK A KP PQ T+ Sbjct: 61 RNPLQWLDPKEAEIHGVRVQKPKPQPQNTS 90
>tr|A9TQ11|A9TQ11_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_9503 PE=4 SV=1 Length = 74
Score = 72.8 bits (177), Expect = 9e-12 Identities = 32/72 (44%), Positives = 41/72 (56%) Frame = +2
Query: 113 MDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWGCFN 292 MDW+GQ+LAEQ+MQY GY++GSF M+ +Y A PDW FN Sbjct: 1 MDWEGQRLAEQLMQYFLLGSAVVAFIVGYVLGSFTFMLYIYLAGVVVTFIVTVPDWPFFN 60
Query: 293 RHPMQWLDPKVA 328 RHP+ WL+P A Sbjct: 61 RHPLTWLEPMYA 72
>tr|Q2QS62|Q2QS62_ORYSJ Microsomal signal peptidase 12 kDa subunit family protein OS=Oryza sativa subsp. japonica GN=LOC_Os12g25210 PE=4 SV=2 Length = 152
Score = 71.2 bits (173), Expect = 3e-11 Identities = 36/90 (40%), Positives = 45/90 (50%) Frame = +2
Query: 107 KNMDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWGC 286 + MDWQGQ+LAE +MQ GY M FQLM+ VY P+W Sbjct: 55 RRMDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPF 114
Query: 287 FNRHPMQWLDPKVAAAESTSKSKPPQVTAT 376 FNRHP++WLD A + PQV+AT Sbjct: 115 FNRHPLKWLD-----AAEADRHPRPQVSAT 139
>tr|Q0INK3|Q0INK3_ORYSJ Os12g0438900 protein OS=Oryza sativa subsp. japonica GN=Os12g0438900 PE=4 SV=1 Length = 179
Score = 70.5 bits (171), Expect = 5e-11 Identities = 36/88 (40%), Positives = 44/88 (50%) Frame = +2
Query: 113 MDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWGCFN 292 MDWQGQ+LAE +MQ GY M FQLM+ VY P+W FN Sbjct: 84 MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 143
Query: 293 RHPMQWLDPKVAAAESTSKSKPPQVTAT 376 RHP++WLD A + PQV+AT Sbjct: 144 RHPLKWLD-----AAEADRHPRPQVSAT 166
>tr|B8BPF7|B8BPF7_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_38198 PE=4 SV=1 Length = 96
Score = 70.5 bits (171), Expect = 5e-11 Identities = 36/88 (40%), Positives = 44/88 (50%) Frame = +2
Query: 113 MDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWGCFN 292 MDWQGQ+LAE +MQ GY M FQLM+ VY P+W FN Sbjct: 1 MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60
Query: 293 RHPMQWLDPKVAAAESTSKSKPPQVTAT 376 RHP++WLD A + PQV+AT Sbjct: 61 RHPLKWLD-----AAEADRHPRPQVSAT 83
>tr|A3CGZ3|A3CGZ3_ORYSJ cDNA, clone: J065204C04, full insert sequence OS=Oryza sativa subsp. japonica GN=OsJ_034565 PE=4 SV=1 Length = 96
Score = 70.5 bits (171), Expect = 5e-11 Identities = 36/88 (40%), Positives = 44/88 (50%) Frame = +2
Query: 113 MDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWGCFN 292 MDWQGQ+LAE +MQ GY M FQLM+ VY P+W FN Sbjct: 1 MDWQGQKLAEMLMQLLLVASAVAAFVVGYAMADFQLMLLVYAGGVVLTALVTVPNWPFFN 60
Query: 293 RHPMQWLDPKVAAAESTSKSKPPQVTAT 376 RHP++WLD A + PQV+AT Sbjct: 61 RHPLKWLD-----AAEADRHPRPQVSAT 83
>tr|Q0WSH4|Q0WSH4_ARATH Putative uncharacterized protein At4g40042 (Fragment) OS=Arabidopsis thaliana GN=At4g40042 PE=2 SV=1 Length = 124
Score = 70.1 bits (170), Expect = 6e-11 Identities = 34/88 (38%), Positives = 45/88 (51%) Frame = +2
Query: 104 YKNMDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWG 283 + +MDWQGQ+LAEQ+MQ GY SF++M+ +Y P+W Sbjct: 29 FLDMDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWP 88
Query: 284 CFNRHPMQWLDPKVAAAESTSKSKPPQV 367 CFNRH ++WLDP A K PQV Sbjct: 89 CFNRHHLKWLDPSEA-----EKHPKPQV 111
>tr|Q84MC9|Q84MC9_ARATH At4g40042 OS=Arabidopsis thaliana PE=4 SV=1 Length = 93
Score = 69.3 bits (168), Expect = 1e-10 Identities = 34/85 (40%), Positives = 43/85 (50%) Frame = +2
Query: 113 MDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWGCFN 292 MDWQGQ+LAEQ+MQ GY SF++M+ +Y P+W CFN Sbjct: 1 MDWQGQKLAEQLMQILLLIAAVVSFVVGYTTASFRMMMLIYAGGVVLTTLITIPNWPCFN 60
Query: 293 RHPMQWLDPKVAAAESTSKSKPPQV 367 RH ++WLDP A K PQV Sbjct: 61 RHHLKWLDPSEA-----EKHPKPQV 80
>tr|B6SIK6|B6SIK6_MAIZE Signal peptidase complex subunit 1 OS=Zea mays PE=4 SV=1 Length = 96
Score = 59.3 bits (142), Expect = 1e-07 Identities = 31/87 (35%), Positives = 41/87 (47%) Frame = +2
Query: 113 MDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWGCFN 292 MDW GQ+ AE +MQ GY+ FQLM+ VY P+W FN Sbjct: 1 MDWLGQKRAEMLMQVLLVASAVAAFLVGYVRADFQLMLLVYAGGVVLTALVTVPNWPFFN 60
Query: 293 RHPMQWLDPKVAAAESTSKSKPPQVTA 373 R+P++WLD A + PQV+A Sbjct: 61 RNPLKWLD-----AAEAERHPRPQVSA 82
>tr|B6SJA3|B6SJA3_MAIZE Signal peptidase complex subunit 1 OS=Zea mays PE=4 SV=1 Length = 96
Score = 58.2 bits (139), Expect = 2e-07 Identities = 30/87 (34%), Positives = 41/87 (47%) Frame = +2
Query: 113 MDWQGQQLAEQIMQYXXXXXXXXXXXXGYMMGSFQLMIQVYGAXXXXXXXXXXPDWGCFN 292 MDW GQ+ AE +MQ GY+ FQLM+ VY P+W +N Sbjct: 1 MDWLGQKRAEMLMQVLLVASAVVAFLVGYVRADFQLMLLVYAGGVVLTALVTVPNWPFYN 60
Query: 293 RHPMQWLDPKVAAAESTSKSKPPQVTA 373 R+P++WLD A + PQV+A Sbjct: 61 RNPLKWLD-----AAEAERHPRPQVSA 82
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