DK944052 |
Clone id |
YMU02A01NGRL0004_N07 |
Library |
YMU02 |
Length |
472 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_N07. 5' end sequence. |
Accession |
DK944052 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
GCTTTGGATGCGCTTCTTCAACTGCTGCAGGTCATGGTTTACCTTCTGTGTTTTCCAGGC CGCAAGATGTTTGAGGTGCCATCCTTCTGTCTTCTTCCCGAGGAGCTTGGTATTGCTACA AATATGGCTGATGCAGATTCTAAGACTTGTAGAAAGGGAGTTTCAGCGGGGACTGAGGTG TGCAGCAAGCGGGTGCCAGCTATTCCAGCAAATGTTGAATCGAGGGTGGAGAATTAGGGA AGAAAGAATGTAGATATAGGTTTTTTGAAAGTGGATGACAGATTTCAGGAGGATCTTTTG GTTTTGGGAGAGACAACCGCATTTGGTTTTGGGGGAGACAGCCACAAAGCAAAAAGATAA GTGGGCAAGAAAGAAGTTTGACTTCTGGAGGAAGGTGTCTGGTGTGGATTGTGATACTTT ACTGGAGAAGATTGAGTTGTGTAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P60330 |
Definition |
sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus |
Align length |
75 |
Score (bit) |
33.1 |
E-value |
0.53 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944052|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_N07, 5' (442 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1 33 0.53 sp|P08640|MUC1_YEAST Mucin-like protein 1 OS=Saccharomyces cerev... 31 2.0 sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sap... 31 2.6 sp|P36956|SRBP1_HUMAN Sterol regulatory element-binding protein ... 31 2.6 sp|P36304|POLR_KYMVJ RNA replicase polyprotein OS=Kennedya yello... 30 4.5 sp|Q8NDZ2|CE025_HUMAN Uncharacterized protein C5orf25 OS=Homo sa... 30 4.5 sp|P28477|POLR_TYMVC RNA replicase polyprotein OS=Turnip yellow ... 30 5.7 sp|P10358|POLR_TYMV RNA replicase polyprotein OS=Turnip yellow m... 30 5.7 sp|Q68FP2|PON3_RAT Serum paraoxonase/lactonase 3 OS=Rattus norve... 30 5.9 sp|Q9H2Y7|ZF106_HUMAN Zinc finger protein 106 homolog OS=Homo sa... 29 7.5 sp|P20128|POLR_TYMVA RNA replicase polyprotein OS=Turnip yellow ... 29 7.5 sp|O28832|GATE_ARCFU Glutamyl-tRNA(Gln) amidotransferase subunit... 29 7.5 sp|A2AWL7|MGAP_MOUSE MAX gene-associated protein OS=Mus musculus... 29 9.8 sp|Q9D9T6|SPTA3_MOUSE Spermatogenesis-associated protein 3 OS=Mu... 29 10.0
>sp|P60330|ESPL1_MOUSE Separin OS=Mus musculus GN=Espl1 PE=2 SV=1 Length = 2118
Score = 33.1 bits (74), Expect = 0.53 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = +2
Query: 2 LWMRFFNCCRSWFTFCVFQAARCLRCHPSVFFPRSLVLLQIWLMQILRLVEREFQRGLRC 181 LW R+ C+ Q A L+ +V+ + L + + +L++V + Q + Sbjct: 748 LWKEVLTKGRAPAVRCLQQTAASLQILAAVYQLVAKPLQALETLLLLQIVSKRLQDHAKA 807
Query: 182 AASGCQLFQQMLNRG 226 A+S CQL Q +LN G Sbjct: 808 ASSSCQLTQLLLNLG 822
>sp|P08640|MUC1_YEAST Mucin-like protein 1 OS=Saccharomyces cerevisiae GN=MUC1 PE=1 SV=2 Length = 1367
Score = 31.2 bits (69), Expect = 2.0 Identities = 35/114 (30%), Positives = 46/114 (40%) Frame = -3
Query: 440 TTQSSPVKYHNPHQTPSSRSQTSFLPTYLFALWLSPPKPNAVVSPKTKRSS*NLSSTFKK 261 TT+SS P TPSS + S S P P S S+ SST + Sbjct: 504 TTESSSA----PVPTPSSSTTESS----------SAPAPTPSSSTTESSSAPVTSSTTES 549
Query: 260 PISTFFLP*FSTLDSTFAGIAGTRLLHTSVPAETPFLQVLESASAIFVAIPSSS 99 + P ST +S+ + + +S P TP ES+SA V PSSS Sbjct: 550 SSAPVPTPSSSTTESSSTPVTSSTTESSSAPVPTPSSSTTESSSAP-VPTPSSS 602
>sp|Q15911|ZFHX3_HUMAN Zinc finger homeobox protein 3 OS=Homo sapiens GN=ZFHX3 PE=1 SV=2 Length = 3703
Score = 30.8 bits (68), Expect = 2.6 Identities = 22/63 (34%), Positives = 34/63 (53%) Frame = -3
Query: 293 SS*NLSSTFKKPISTFFLP*FSTLDSTFAGIAGTRLLHTSVPAETPFLQVLESASAIFVA 114 SS +LSS+ P+ST F+T + + AGIA + L + VP E+ + L + +A Sbjct: 1643 SSISLSSSTPSPVSTSGSNTFTTSNPSSAGIAPSSNLLSQVPTESVGMPPLGNPIGANIA 1702
Query: 113 IPS 105 PS Sbjct: 1703 SPS 1705
>sp|P36956|SRBP1_HUMAN Sterol regulatory element-binding protein 1 OS=Homo sapiens GN=SREBF1 PE=1 SV=2 Length = 1147
Score = 30.8 bits (68), Expect = 2.6 Identities = 15/54 (27%), Positives = 25/54 (46%), Gaps = 2/54 (3%) Frame = -1
Query: 412 TIHTRHLPPEVKLLSCPLIFLLCGCLPQNQM--RLSLPKPKDPPEICHPLSKNL 257 ++H+R + +L C L+FL C P + LP P D + H +N+ Sbjct: 476 SLHSRGMLDRSRLALCTLVFLCLSCNPLASLLGARGLPSPSDTTSVYHSPGRNV 529
>sp|P36304|POLR_KYMVJ RNA replicase polyprotein OS=Kennedya yellow mosaic virus (strain Jervis bay) PE=3 SV=1 Length = 1874
Score = 30.0 bits (66), Expect = 4.5 Identities = 21/72 (29%), Positives = 29/72 (40%), Gaps = 12/72 (16%) Frame = -1
Query: 334 PQNQMRLSLPKPKDPPEICHPLS------------KNLYLHSFFPNSPPSIQHLLE*LAP 191 P N LP+PK P E+ PL +LY FFPN+ + L Sbjct: 742 PTNTTLSLLPEPKPPTEVQSPLMADPTCVGPAVSFSSLYPRDFFPNTASFLTRLR----- 796
Query: 190 ACCTPQSPLKLP 155 +P +PL +P Sbjct: 797 --LSPPTPLPMP 806
>sp|Q8NDZ2|CE025_HUMAN Uncharacterized protein C5orf25 OS=Homo sapiens GN=C5orf25 PE=1 SV=1 Length = 872
Score = 30.0 bits (66), Expect = 4.5 Identities = 22/70 (31%), Positives = 29/70 (41%) Frame = -1
Query: 334 PQNQMRLSLPKPKDPPEICHPLSKNLYLHSFFPNSPPSIQHLLE*LAPACCTPQSPLKLP 155 PQ+ + L P P I HP YL P SP + ++P+ PQSP +P Sbjct: 260 PQDSLGLPQDVPGLPQSILHPQDV-AYLQDM-PRSPGDVPQSPSDVSPSPDAPQSPGGMP 317
Query: 154 FYKS*NLHQP 125 LH P Sbjct: 318 HLPGDVLHSP 327
>sp|P28477|POLR_TYMVC RNA replicase polyprotein OS=Turnip yellow mosaic virus (isolate TYMC) PE=3 SV=1 Length = 1844
Score = 29.6 bits (65), Expect = 5.7 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Frame = -3
Query: 407 PHQTPSSRSQTSFLPTYLFALW------LSPPKPNAVVSPKTKRSS*NLSSTFKKPISTF 246 P Q P +R T FLP L ++PP + V P ++S F ++ F Sbjct: 1294 PDQGPETRLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKASPVYPGEFFDSLAAF 1353
Query: 245 FLP 237 FLP Sbjct: 1354 FLP 1356
>sp|P10358|POLR_TYMV RNA replicase polyprotein OS=Turnip yellow mosaic virus PE=3 SV=2 Length = 1844
Score = 29.6 bits (65), Expect = 5.7 Identities = 19/63 (30%), Positives = 27/63 (42%), Gaps = 6/63 (9%) Frame = -3
Query: 407 PHQTPSSRSQTSFLPTYLFALW------LSPPKPNAVVSPKTKRSS*NLSSTFKKPISTF 246 P Q P +R T FLP L ++PP + V P ++S F ++ F Sbjct: 1294 PDQGPETRLDTHFLPPSRLPLHFDLPPAITPPPVSTSVDPPQAKASPVYPGEFFDSLAAF 1353
Query: 245 FLP 237 FLP Sbjct: 1354 FLP 1356
>sp|Q68FP2|PON3_RAT Serum paraoxonase/lactonase 3 OS=Rattus norvegicus GN=Pon3 PE=2 SV=1 Length = 354
Score = 29.6 bits (65), Expect = 5.9 Identities = 18/51 (35%), Positives = 27/51 (52%), Gaps = 5/51 (9%) Frame = -1
Query: 352 LLCGCLPQNQMRLSLPKPKDPP-----EICHPLSKNLYLHSFFPNSPPSIQ 215 +L GC P N M+L + P+DPP I PLS N + + + N+ +Q Sbjct: 279 ILAGCHP-NPMKLLIYNPEDPPGSEVLRIQDPLSDNPRVSTLYSNNGSVLQ 328
>sp|Q9H2Y7|ZF106_HUMAN Zinc finger protein 106 homolog OS=Homo sapiens GN=ZFP106 PE=1 SV=1 Length = 1883
Score = 29.3 bits (64), Expect = 7.5 Identities = 19/47 (40%), Positives = 23/47 (48%), Gaps = 4/47 (8%) Frame = -3
Query: 392 SSRSQTSF----LPTYLFALWLSPPKPNAVVSPKTKRSS*NLSSTFK 264 +SRSQTS LPT F L+L PP + SP S TF+ Sbjct: 1139 NSRSQTSIDAALLPTPFFPLFLEPPSSHVSPSPTGASLQITTSPTFQ 1185
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
B6NFZ7 |
Definition |
tr|B6NFZ7|B6NFZ7_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae |
Align length |
80 |
Score (bit) |
36.6 |
E-value |
0.63 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944052|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_N07, 5' (442 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|B6NFZ7|B6NFZ7_BRAFL Putative uncharacterized protein OS=Branc... 37 0.63 tr|B6KNN2|B6KNN2_TOXGO Putative uncharacterized protein OS=Toxop... 37 0.64 tr|Q693M7|Q693M7_EPIBA Even-skipped (Fragment) OS=Episyrphus bal... 34 3.1 tr|Q0FEI6|Q0FEI6_9RHOB Putative cyclopropane/cyclopropene fatty ... 34 4.1 tr|Q2R3G9|Q2R3G9_ORYSJ Retrotransposon protein, putative, Ty1-co... 34 4.1 tr|B0WC54|B0WC54_CULQU Putative uncharacterized protein OS=Culex... 34 4.1 tr|Q4P541|Q4P541_USTMA Predicted protein OS=Ustilago maydis GN=U... 33 5.4 tr|Q299E8|Q299E8_DROPS GA19017 OS=Drosophila pseudoobscura pseud... 33 5.4 tr|Q0GJI4|Q0GJI4_HAPBU Estrogen receptor beta b (Fragment) OS=Ha... 32 5.5 tr|Q56TS3|Q56TS3_MOUSE Protein related to CUT1 and ESP1 OS=Mus m... 33 7.0 tr|Q0VGV2|Q0VGV2_MOUSE Extra spindle poles-like 1 (S. cerevisiae... 33 7.0 tr|A6H6E3|A6H6E3_MOUSE Extra spindle poles-like 1 (S. cerevisiae... 33 7.0 tr|A6H6E1|A6H6E1_MOUSE Espl1 protein OS=Mus musculus GN=Espl1 PE... 33 7.0 tr|Q52VI0|Q52VI0_CIOIN META2 (Fragment) OS=Ciona intestinalis GN... 33 7.0 tr|Q4JTS5|Q4JTS5_CORJK Putative uncharacterized protein OS=Coryn... 33 9.2 tr|A4Q377|A4Q377_MEDTR WD40-like OS=Medicago truncatula GN=MtrDR... 33 9.2 tr|Q1DJP5|Q1DJP5_COCIM Putative uncharacterized protein OS=Cocci... 33 9.2 tr|Q54JT9|Q54JT9_DICDI Putative uncharacterized protein OS=Dicty... 33 9.2
>tr|B6NFZ7|B6NFZ7_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_94673 PE=4 SV=1 Length = 169
Score = 36.6 bits (83), Expect = 0.63 Identities = 30/80 (37%), Positives = 37/80 (46%), Gaps = 2/80 (2%) Frame = -1
Query: 397 HLPPEVKLLSCPLIFLLCGCLPQNQMRLSLPKPKDPPEICHPLSKNLYLHSFFPNSPPSI 218 ++PP V +LS PL LC LSL P P +C PLSK L L S P+ P + Sbjct: 89 NVPPPVPVLSSPLSKPLC---------LSLCSPPSKP-LCSPLSKPLCLLSLCPSKPMCL 138
Query: 217 QHLLE*LAPACCT--PQSPL 164 L P C + P PL Sbjct: 139 LSLCS-SRPLCLSRPPSKPL 157
>tr|B6KNN2|B6KNN2_TOXGO Putative uncharacterized protein OS=Toxoplasma gondii ME49 GN=TGME49_054000 PE=4 SV=1 Length = 476
Score = 36.6 bits (83), Expect = 0.64 Identities = 16/31 (51%), Positives = 20/31 (64%) Frame = -3
Query: 407 PHQTPSSRSQTSFLPTYLFALWLSPPKPNAV 315 P +P SRS TSFLP FA ++PP PN + Sbjct: 69 PSLSPPSRSPTSFLPNASFAACMAPPPPNQI 99
>tr|Q693M7|Q693M7_EPIBA Even-skipped (Fragment) OS=Episyrphus balteatus PE=2 SV=1 Length = 228
Score = 34.3 bits (77), Expect = 3.1 Identities = 19/61 (31%), Positives = 29/61 (47%) Frame = -1
Query: 394 LPPEVKLLSCPLIFLLCGCLPQNQMRLSLPKPKDPPEICHPLSKNLYLHSFFPNSPPSIQ 215 +PP + L+ P + G +PQ +L++PKP PP H + + HS SP Sbjct: 93 MPPTAQPLAYPTML---GAIPQGYTQLTIPKPHTPP---HDMQSSSSPHSTLSLSPAGSD 146
Query: 214 H 212 H Sbjct: 147 H 147
>tr|Q0FEI6|Q0FEI6_9RHOB Putative cyclopropane/cyclopropene fatty acid synthesis protein, flavin amine oxidase OS=Rhodobacterales bacterium HTCC2255 GN=OM2255_08391 PE=4 SV=1 Length = 427
Score = 33.9 bits (76), Expect = 4.1 Identities = 13/36 (36%), Positives = 22/36 (61%) Frame = -2
Query: 303 NQKILLKSVIHFQKTYIYILSSLILHPRFNICWNSW 196 ++++ L S I +QK Y+ S I+ P+ CW+SW Sbjct: 284 DEEVKLLSAIKYQKNQAYLHSDTIVMPKRKRCWSSW 319
>tr|Q2R3G9|Q2R3G9_ORYSJ Retrotransposon protein, putative, Ty1-copia subclass OS=Oryza sativa subsp. japonica GN=LOC_Os11g31970 PE=4 SV=1 Length = 1212
Score = 33.9 bits (76), Expect = 4.1 Identities = 29/115 (25%), Positives = 50/115 (43%), Gaps = 8/115 (6%) Frame = -2
Query: 321 CGCLSQNQKILLKSVIHFQKTYIYILSSLILHPRFNI--------CWNSWHPLAAHLSPR 166 CG + + + H + LSS+ L P+F+I C S P H + Sbjct: 410 CGSVDDEANVWHSRLCHINFGLMSRLSSMCLIPKFSIVKGSKCHSCVQSKQPRKPHKAAE 469
Query: 165 *NSLSTSLRICISHICSNTKLLGKKTEGWHLKHLAAWKTQKVNHDLQQLKKRIQS 1 +L+ L + S +C +L KKT+ L + +K + V + L + KR++S Sbjct: 470 ERNLA-PLELLHSDLCEMNGVLTKKTKDEALDYFKIYKAE-VENQLDRKIKRLRS 522
>tr|B0WC54|B0WC54_CULQU Putative uncharacterized protein OS=Culex quinquefasciatus GN=CpipJ_CPIJ004524 PE=4 SV=1 Length = 389
Score = 33.9 bits (76), Expect = 4.1 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 4/80 (5%) Frame = -1
Query: 394 LPPEVKLLSCPLIFLLCGCLPQNQMRLSLPKPKDPPEI----CHPLSKNLYLHSFFPNSP 227 LPP + P G +P ++LP P +PP CHP +H FP P Sbjct: 28 LPPHHPMHGSPFENGTFGFVPPPPASIALPCPVEPPICPPIPCHPPGPMGPMHRHFPRYP 87
Query: 226 PSIQHLLE*LAPACCTPQSP 167 P+ L+ + P P P Sbjct: 88 PATLAPLQAMIPGPGPPGPP 107
>tr|Q4P541|Q4P541_USTMA Predicted protein OS=Ustilago maydis GN=UM04772.1 PE=4 SV=1 Length = 166
Score = 33.5 bits (75), Expect = 5.4 Identities = 25/64 (39%), Positives = 31/64 (48%) Frame = +2
Query: 29 RSWFTFCVFQAARCLRCHPSVFFPRSLVLLQIWLMQILRLVEREFQRGLRCAASGCQLFQ 208 R W + ARC+ H SV V L + L ++ RL GLRCAASG L Q Sbjct: 90 RRWLKSRTWIGARCILIHGSVT-RHGPVCLSVGLGRVDRL-------GLRCAASGNSLVQ 141
Query: 209 QMLN 220 Q L+ Sbjct: 142 QALS 145
>tr|Q299E8|Q299E8_DROPS GA19017 OS=Drosophila pseudoobscura pseudoobscura GN=GA19017 PE=4 SV=2 Length = 484
Score = 33.5 bits (75), Expect = 5.4 Identities = 39/134 (29%), Positives = 55/134 (41%), Gaps = 11/134 (8%) Frame = -3
Query: 434 QSSPVKYHNPH--QTPSSRSQTSFLPTYLFALWLSPPKPNAVVSPKTKRSS*NLSSTFKK 261 + S KYH+ QT + S +S+ T A++ PP P + + S L + KK Sbjct: 159 RKSHKKYHSRQRRQTYTPCSHSSYYQTPSHAVYFQPPAPPSPYYYLPAKPSQRLPVSGKK 218
Query: 260 PISTFFLP*F------STLDSTFAGIAGTRLLHTSVPAETPFL---QVLESASAIFVAIP 108 PI LP + + + G LLH S PAE F Q + + I + Sbjct: 219 PILPGKLPIWQDKTDENPTNPMSIGSRDDFLLHNSDPAEADFSIFNQPRPNPNEISGSSG 278
Query: 107 SSSGRRQKDGTSNI 66 SSSG G NI Sbjct: 279 SSSGSGSDRGRDNI 292
>tr|Q0GJI4|Q0GJI4_HAPBU Estrogen receptor beta b (Fragment) OS=Haplochromis burtoni PE=2 SV=1 Length = 607
Score = 31.6 bits (70), Expect(2) = 5.5 Identities = 22/53 (41%), Positives = 28/53 (52%) Frame = -2
Query: 240 SLILHPRFNICWNSWHPLAAHLSPR*NSLSTSLRICISHICSNTKLLGKKTEG 82 SL LH + +N P A L P+ + +S S S I S KLLGKK+EG Sbjct: 54 SLTLHCTQPLVYNEPSPHAPWLDPKVHGISPS-----SSIISCNKLLGKKSEG 101
Score = 20.8 bits (42), Expect(2) = 5.5 Identities = 9/30 (30%), Positives = 15/30 (50%) Frame = -1
Query: 307 PKPKDPPEICHPLSKNLYLHSFFPNSPPSI 218 P P +C PLS + + S ++ PS+ Sbjct: 26 PITDSPSSLCPPLSPSAFWPSHTHHNVPSL 55
>tr|Q56TS3|Q56TS3_MOUSE Protein related to CUT1 and ESP1 OS=Mus musculus GN=Espl1 PE=2 SV=1 Length = 2118
Score = 33.1 bits (74), Expect = 7.0 Identities = 21/75 (28%), Positives = 36/75 (48%) Frame = +2
Query: 2 LWMRFFNCCRSWFTFCVFQAARCLRCHPSVFFPRSLVLLQIWLMQILRLVEREFQRGLRC 181 LW R+ C+ Q A L+ +V+ + L + + +L++V + Q + Sbjct: 748 LWKEVLTKGRAPAVRCLQQTAASLQILAAVYQLVAKPLQALETLLLLQIVSKRLQDHAKA 807
Query: 182 AASGCQLFQQMLNRG 226 A+S CQL Q +LN G Sbjct: 808 ASSSCQLTQLLLNLG 822
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