DK944062
Clone id YMU02A01NGRL0004_N20
Library
Length 425
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_N20. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGTCTGCCCACGTGTCTCCTT
GCTTCCGTGTGAAAGAGGGGGACAAGGTTATTATCGGGCAGTGCCGGCCTCTTTCAAAGA
CTGTAAGATTCAACGTCTTGAAGGTCTTTCCTATGGGAGCCGCAGAGGGTGGCAAGAAGG
CATTCACTGCAATGTAGTGTACCGTAGTTTTCCATCGAACCTAATTTTTGTCTAAATTTC
ATGGGTACCTTGGACTCTTGTGCGAAGGTCACTATTTTGTGAAGCTAATGTTCACTGTCG
CTTCCAAGAGCTGAGTTTTTTCAACGCAACATTTTTACATGTTTATTGTTTGAAGACAAA
GAATCATACTTGCATCAGAGGGCTTTTTGTGCTCGAAAAAAAAAAAAAAAAAAAAAAAAA
AAAAA
■■Homology search results ■■ -
sp_hit_id P25460
Definition sp|P25460|RS11_MAIZE 40S ribosomal protein S11 OS=Zea mays
Align length 49
Score (bit) 89.0
E-value 7.0e-18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944062|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_N20, 5'
(355 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P25460|RS11_MAIZE 40S ribosomal protein S11 OS=Zea mays GN=RP... 89 7e-18
sp|Q9M5M1|RS11_EUPES 40S ribosomal protein S11 OS=Euphorbia esul... 88 1e-17
sp|P42733|RS113_ARATH 40S ribosomal protein S11-3 OS=Arabidopsis... 88 1e-17
sp|O65569|RS112_ARATH 40S ribosomal protein S11-2 OS=Arabidopsis... 88 2e-17
sp|P17093|RS11_SOYBN 40S ribosomal protein S11 OS=Glycine max GN... 86 4e-17
sp|P16181|RS111_ARATH 40S ribosomal protein S11-1 OS=Arabidopsis... 85 1e-16
sp|P42756|RS11_DUNTE 40S ribosomal protein S11 OS=Dunaliella ter... 75 8e-14
sp|Q54S90|RS11_DICDI 40S ribosomal protein S11 OS=Dictyostelium ... 63 4e-10
sp|P79013|RS11_SCHPO 40S ribosomal protein S11 OS=Schizosaccharo... 62 1e-09
sp|P52812|RS11_ANOGA 40S ribosomal protein S11 OS=Anopheles gamb... 61 2e-09
sp|P41115|RS11_XENLA 40S ribosomal protein S11 OS=Xenopus laevis... 59 6e-09
sp|P62282|RS11_RAT 40S ribosomal protein S11 OS=Rattus norvegicu... 58 1e-08
sp|P62281|RS11_MOUSE 40S ribosomal protein S11 OS=Mus musculus G... 58 1e-08
sp|P61270|RS11_MACFA 40S ribosomal protein S11 OS=Macaca fascicu... 58 1e-08
sp|P62280|RS11_HUMAN 40S ribosomal protein S11 OS=Homo sapiens G... 58 1e-08
sp|Q3T0V4|RS11_BOVIN 40S ribosomal protein S11 OS=Bos taurus GN=... 58 1e-08
sp|Q292D0|RS11_DROPS 40S ribosomal protein S11 OS=Drosophila pse... 57 2e-08
sp|Q6XHX5|RS11_DROYA 40S ribosomal protein S11 OS=Drosophila yak... 57 3e-08
sp|Q0E9B6|RS11_DROME 40S ribosomal protein S11 OS=Drosophila mel... 57 3e-08
sp|P26781|RS11_YEAST 40S ribosomal protein S11 OS=Saccharomyces ... 57 4e-08
sp|Q9UX98|RS17_SULSO 30S ribosomal protein S17P OS=Sulfolobus so... 54 3e-07
sp|Q0W1X9|RS17_UNCMA 30S ribosomal protein S17P OS=Uncultured me... 48 1e-05
sp|Q975I9|RS17_SULTO 30S ribosomal protein S17P OS=Sulfolobus to... 45 9e-05
sp|Q9YF81|RS17_AERPE 30S ribosomal protein S17P OS=Aeropyrum per... 45 1e-04
sp|Q8TW21|RS17_METKA 30S ribosomal protein S17P OS=Methanopyrus ... 44 3e-04
sp|Q4JB49|RS17_SULAC 30S ribosomal protein S17P OS=Sulfolobus ac... 42 7e-04
sp|A2SPL1|RS17_METLZ 30S ribosomal protein S17P OS=Methanocorpus... 42 0.001
sp|Q8U008|RS17_PYRFU 30S ribosomal protein S17P OS=Pyrococcus fu... 41 0.002
sp|O28363|RS17_ARCFU 30S ribosomal protein S17P OS=Archaeoglobus... 41 0.002
sp|A3CT06|RS17_METMJ 30S ribosomal protein S17P OS=Methanoculleu... 40 0.004

>sp|P25460|RS11_MAIZE 40S ribosomal protein S11 OS=Zea mays GN=RPS11
PE=2 SV=1
Length = 159

Score = 89.0 bits (219), Expect = 7e-18
Identities = 41/49 (83%), Positives = 44/49 (89%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 151
AH+SPCFRVKEGD VIIGQCRPLSKTVRFNV+KV P G+A GKKAFTA
Sbjct: 110 AHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158


>sp|Q9M5M1|RS11_EUPES 40S ribosomal protein S11 OS=Euphorbia esula
GN=RPS11 PE=2 SV=1
Length = 159

Score = 88.2 bits (217), Expect = 1e-17
Identities = 42/50 (84%), Positives = 45/50 (90%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154
AHVSPCFRVKEGD VIIGQCRPLSKTVRFNVLKV P G++ G KKAFTA+
Sbjct: 110 AHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSGGVKKAFTAI 159


>sp|P42733|RS113_ARATH 40S ribosomal protein S11-3 OS=Arabidopsis
thaliana GN=RPS11C PE=2 SV=2
Length = 159

Score = 88.2 bits (217), Expect = 1e-17
Identities = 42/50 (84%), Positives = 44/50 (88%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154
AHVSPCFRVKEGD VIIGQCRPLSKTVRFNVLKV P GA+ GKKAFT +
Sbjct: 110 AHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGASAFGKKAFTGV 159


>sp|O65569|RS112_ARATH 40S ribosomal protein S11-2 OS=Arabidopsis
thaliana GN=RPS11B PE=2 SV=2
Length = 159

Score = 87.8 bits (216), Expect = 2e-17
Identities = 41/50 (82%), Positives = 44/50 (88%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154
AHVSPCFRVKEGD+V IGQCRPLSKTVRFNVLKV P G++ GKKAFT M
Sbjct: 110 AHVSPCFRVKEGDRVTIGQCRPLSKTVRFNVLKVIPAGSSSIGKKAFTGM 159


>sp|P17093|RS11_SOYBN 40S ribosomal protein S11 OS=Glycine max
GN=RPS11 PE=2 SV=2
Length = 159

Score = 86.3 bits (212), Expect = 4e-17
Identities = 40/50 (80%), Positives = 43/50 (86%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154
AH+SP FRVKEGD VIIGQCRPLSKTVRFNVLKV P G++ G KKAFT M
Sbjct: 110 AHISPAFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAKKAFTGM 159


>sp|P16181|RS111_ARATH 40S ribosomal protein S11-1 OS=Arabidopsis
thaliana GN=RPS11A PE=2 SV=1
Length = 160

Score = 85.1 bits (209), Expect = 1e-16
Identities = 41/51 (80%), Positives = 44/51 (86%), Gaps = 1/51 (1%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 154
AHVSPCFRVKEGD +IIGQCRPLSKTVRFNVLKV P G++ GKKAFT M
Sbjct: 110 AHVSPCFRVKEGDHIIIGQCRPLSKTVRFNVLKVIPAGSSSSFGKKAFTGM 160


>sp|P42756|RS11_DUNTE 40S ribosomal protein S11 OS=Dunaliella
tertiolecta GN=RPS11 PE=2 SV=1
Length = 157

Score = 75.5 bits (184), Expect = 8e-14
Identities = 35/48 (72%), Positives = 41/48 (85%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFT 148
AHVSPCFRV++GD VIIGQCRPLSKT+RFNVL+V P A GKK+F+
Sbjct: 109 AHVSPCFRVRDGDTVIIGQCRPLSKTIRFNVLRVIPQAGAT-GKKSFS 155


>sp|Q54S90|RS11_DICDI 40S ribosomal protein S11 OS=Dictyostelium
discoideum GN=rps11 PE=3 SV=1
Length = 155

Score = 63.2 bits (152), Expect = 4e-10
Identities = 32/47 (68%), Positives = 35/47 (74%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAF 145
AHVSP F VKEGD V IGQCRPLSKTVRFNV+K A++ KAF
Sbjct: 109 AHVSPAFNVKEGDSVTIGQCRPLSKTVRFNVIKHDISAASKKQFKAF 155


>sp|P79013|RS11_SCHPO 40S ribosomal protein S11
OS=Schizosaccharomyces pombe GN=rps11a PE=2 SV=2
Length = 152

Score = 61.6 bits (148), Expect = 1e-09
Identities = 27/35 (77%), Positives = 31/35 (88%)
Frame = +2

Query: 2 SAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKV 106
+AHVSP FR+ EGD V +GQCRPLSKTVRFNVL+V
Sbjct: 105 AAHVSPAFRINEGDVVTVGQCRPLSKTVRFNVLRV 139


>sp|P52812|RS11_ANOGA 40S ribosomal protein S11 OS=Anopheles gambiae
GN=RpS11 PE=2 SV=2
Length = 153

Score = 60.8 bits (146), Expect = 2e-09
Identities = 32/50 (64%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Frame = +2

Query: 2 SAHVSPCFR-VKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFT 148
S H+SPCFR V+ GD V +G+CRPLSKTVRFNVLKV M G KK F+
Sbjct: 105 SVHLSPCFRDVEAGDIVTVGECRPLSKTVRFNVLKVSKMA---GSKKKFS 151


tr_hit_id Q1H8R1
Definition tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium rubrum
Align length 50
Score (bit) 92.8
E-value 8.0e-18
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944062|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_N20, 5'
(355 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium ... 93 8e-18
tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella paten... 90 6e-17
tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella paten... 90 6e-17
tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 89 1e-16
tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 89 1e-16
tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medic... 88 2e-16
tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medic... 88 2e-16
tr|Q0J7A8|Q0J7A8_ORYSJ Os08g0207000 protein (Fragment) OS=Oryza ... 87 3e-16
tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza... 87 3e-16
tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Popul... 87 4e-16
tr|A7QS26|A7QS26_VITVI Chromosome undetermined scaffold_155, who... 87 4e-16
tr|Q8H4T5|Q8H4T5_ORYSJ Os07g0565100 protein OS=Oryza sativa subs... 87 6e-16
tr|Q7XLC9|Q7XLC9_ORYSJ Os04g0613600 protein OS=Oryza sativa subs... 87 6e-16
tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subs... 87 6e-16
tr|B8AU50|B8AU50_ORYSI Putative uncharacterized protein OS=Oryza... 87 6e-16
tr|A2XXG3|A2XXG3_ORYSI Putative uncharacterized protein OS=Oryza... 87 6e-16
tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 86 7e-16
tr|A7P608|A7P608_VITVI Chromosome chr4 scaffold_6, whole genome ... 86 7e-16
tr|A9P8K6|A9P8K6_POPTR Putative uncharacterized protein OS=Popul... 86 9e-16
tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea... 85 2e-15
tr|Q0JBY8|Q0JBY8_ORYSJ Os04g0502300 protein OS=Oryza sativa subs... 85 2e-15
tr|Q01I56|Q01I56_ORYSA OSIGBa0112M24.1 protein OS=Oryza sativa G... 85 2e-15
tr|A3AVB8|A3AVB8_ORYSJ Putative uncharacterized protein OS=Oryza... 85 2e-15
tr|A2XV92|A2XV92_ORYSI Putative uncharacterized protein OS=Oryza... 85 2e-15
tr|Q42128|Q42128_ARATH Ribosomal protein S11, 40S (Fragment) OS=... 82 2e-14
tr|B6TDP8|B6TDP8_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 82 2e-14
tr|B6SIL5|B6SIL5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 82 2e-14
tr|Q6T346|Q6T346_QUEPE Ribosomal protein S11 (Fragment) OS=Querc... 81 3e-14
tr|A4RYN3|A4RYN3_OSTLU Ribosomal protein S11, component of cytos... 77 4e-13
tr|A8JHC3|A8JHC3_CHLRE Ribosomal protein S11 OS=Chlamydomonas re... 76 7e-13

>tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium
rubrum GN=rpS11 PE=2 SV=1
Length = 159

Score = 92.8 bits (229), Expect = 8e-18
Identities = 43/50 (86%), Positives = 45/50 (90%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154
AHVSPCFRVKEGD VIIGQCRP+SKTVRFNVLKV P GAA GGKKAFT +
Sbjct: 110 AHVSPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGAASGGKKAFTGL 159


>tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_163092 PE=3 SV=1
Length = 160

Score = 89.7 bits (221), Expect = 6e-17
Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 1/52 (1%)
Frame = +2

Query: 2 SAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 154
+AHVSP FRVKEGDKVIIGQCRPLSKTVRFNVLKV PMGA++GG KK FTA+
Sbjct: 109 AAHVSPAFRVKEGDKVIIGQCRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160


>tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_161124 PE=3 SV=1
Length = 160

Score = 89.7 bits (221), Expect = 6e-17
Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 1/52 (1%)
Frame = +2

Query: 2 SAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 154
+AHVSP FRVKEGDKVIIGQCRPLSKTVRFNVLKV PMGA++GG KK FTA+
Sbjct: 109 AAHVSPAFRVKEGDKVIIGQCRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160


>tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=2
SV=1
Length = 159

Score = 89.0 bits (219), Expect = 1e-16
Identities = 41/49 (83%), Positives = 44/49 (89%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 151
AH+SPCFRVKEGD VIIGQCRPLSKTVRFNV+KV P G+A GKKAFTA
Sbjct: 110 AHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158


>tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis
guineensis var. tenera PE=2 SV=1
Length = 159

Score = 89.0 bits (219), Expect = 1e-16
Identities = 41/51 (80%), Positives = 45/51 (88%)
Frame = +2

Query: 2 SAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154
+AH+SPCFRVKEGD VIIGQCRPLSKTVRFNVLKV P G+ GGKKAF A+
Sbjct: 109 AAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSKGGGKKAFAAV 159


>tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 160

Score = 87.8 bits (216), Expect = 2e-16
Identities = 43/51 (84%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 154
AHVSPCFRVKEGD VIIGQCRPLSKTVRFNVLKV P G++ G GKKAFT M
Sbjct: 110 AHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160


>tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medicago
truncatula PE=2 SV=1
Length = 160

Score = 87.8 bits (216), Expect = 2e-16
Identities = 43/51 (84%), Positives = 45/51 (88%), Gaps = 1/51 (1%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 154
AHVSPCFRVKEGD VIIGQCRPLSKTVRFNVLKV P G++ G GKKAFT M
Sbjct: 110 AHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160


>tr|Q0J7A8|Q0J7A8_ORYSJ Os08g0207000 protein (Fragment) OS=Oryza
sativa subsp. japonica GN=Os08g0207000 PE=3 SV=1
Length = 55

Score = 87.4 bits (215), Expect = 3e-16
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 151
AH+SPCFRVKEGD VIIGQCRPLSKTVRFNV+KV P G+ GGKKAF A
Sbjct: 6 AHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAFIA 54


>tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_28229 PE=4 SV=1
Length = 159

Score = 87.4 bits (215), Expect = 3e-16
Identities = 40/49 (81%), Positives = 43/49 (87%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 151
AH+SPCFRVKEGD VIIGQCRPLSKTVRFNV+KV P G+ GGKKAF A
Sbjct: 110 AHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAFIA 158


>tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=2 SV=1
Length = 159

Score = 87.0 bits (214), Expect = 4e-16
Identities = 39/50 (78%), Positives = 44/50 (88%)
Frame = +2

Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154
AH+SPCFR++EGD V IGQCRPLSKTVRFNVLKV P G++ G KKAFTAM
Sbjct: 110 AHISPCFRIREGDHVTIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159