DK944062 |
Clone id |
YMU02A01NGRL0004_N20 |
Library |
YMU02 |
Length |
425 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_N20. 5' end sequence. |
Accession |
DK944062 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL98Contig1 |
Sequence |
GAAGCAGTGGTATCAACGCAGAGTGGCCATTACGGCCGGGGTCTGCCCACGTGTCTCCTT GCTTCCGTGTGAAAGAGGGGGACAAGGTTATTATCGGGCAGTGCCGGCCTCTTTCAAAGA CTGTAAGATTCAACGTCTTGAAGGTCTTTCCTATGGGAGCCGCAGAGGGTGGCAAGAAGG CATTCACTGCAATGTAGTGTACCGTAGTTTTCCATCGAACCTAATTTTTGTCTAAATTTC ATGGGTACCTTGGACTCTTGTGCGAAGGTCACTATTTTGTGAAGCTAATGTTCACTGTCG CTTCCAAGAGCTGAGTTTTTTCAACGCAACATTTTTACATGTTTATTGTTTGAAGACAAA GAATCATACTTGCATCAGAGGGCTTTTTGTGCTCGAAAAAAAAAAAAAAAAAAAAAAAAA AAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P25460 |
Definition |
sp|P25460|RS11_MAIZE 40S ribosomal protein S11 OS=Zea mays |
Align length |
49 |
Score (bit) |
89.0 |
E-value |
7.0e-18 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q1H8R1 |
Definition |
tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium rubrum |
Align length |
50 |
Score (bit) |
92.8 |
E-value |
8.0e-18 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944062|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_N20, 5' (355 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium ... 93 8e-18 tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella paten... 90 6e-17 tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella paten... 90 6e-17 tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 89 1e-16 tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 89 1e-16 tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medic... 88 2e-16 tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medic... 88 2e-16 tr|Q0J7A8|Q0J7A8_ORYSJ Os08g0207000 protein (Fragment) OS=Oryza ... 87 3e-16 tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza... 87 3e-16 tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Popul... 87 4e-16 tr|A7QS26|A7QS26_VITVI Chromosome undetermined scaffold_155, who... 87 4e-16 tr|Q8H4T5|Q8H4T5_ORYSJ Os07g0565100 protein OS=Oryza sativa subs... 87 6e-16 tr|Q7XLC9|Q7XLC9_ORYSJ Os04g0613600 protein OS=Oryza sativa subs... 87 6e-16 tr|Q7XIK5|Q7XIK5_ORYSJ Os07g0565000 protein OS=Oryza sativa subs... 87 6e-16 tr|B8AU50|B8AU50_ORYSI Putative uncharacterized protein OS=Oryza... 87 6e-16 tr|A2XXG3|A2XXG3_ORYSI Putative uncharacterized protein OS=Oryza... 87 6e-16 tr|B3TLZ7|B3TLZ7_ELAGV 40S ribosomal protein S11 OS=Elaeis guine... 86 7e-16 tr|A7P608|A7P608_VITVI Chromosome chr4 scaffold_6, whole genome ... 86 7e-16 tr|A9P8K6|A9P8K6_POPTR Putative uncharacterized protein OS=Popul... 86 9e-16 tr|A9NN19|A9NN19_PICSI Putative uncharacterized protein OS=Picea... 85 2e-15 tr|Q0JBY8|Q0JBY8_ORYSJ Os04g0502300 protein OS=Oryza sativa subs... 85 2e-15 tr|Q01I56|Q01I56_ORYSA OSIGBa0112M24.1 protein OS=Oryza sativa G... 85 2e-15 tr|A3AVB8|A3AVB8_ORYSJ Putative uncharacterized protein OS=Oryza... 85 2e-15 tr|A2XV92|A2XV92_ORYSI Putative uncharacterized protein OS=Oryza... 85 2e-15 tr|Q42128|Q42128_ARATH Ribosomal protein S11, 40S (Fragment) OS=... 82 2e-14 tr|B6TDP8|B6TDP8_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 82 2e-14 tr|B6SIL5|B6SIL5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=... 82 2e-14 tr|Q6T346|Q6T346_QUEPE Ribosomal protein S11 (Fragment) OS=Querc... 81 3e-14 tr|A4RYN3|A4RYN3_OSTLU Ribosomal protein S11, component of cytos... 77 4e-13 tr|A8JHC3|A8JHC3_CHLRE Ribosomal protein S11 OS=Chlamydomonas re... 76 7e-13
>tr|Q1H8R1|Q1H8R1_CHERU 40S ribosomal protein S11 OS=Chenopodium rubrum GN=rpS11 PE=2 SV=1 Length = 159
Score = 92.8 bits (229), Expect = 8e-18 Identities = 43/50 (86%), Positives = 45/50 (90%) Frame = +2
Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154 AHVSPCFRVKEGD VIIGQCRP+SKTVRFNVLKV P GAA GGKKAFT + Sbjct: 110 AHVSPCFRVKEGDHVIIGQCRPISKTVRFNVLKVIPAGAASGGKKAFTGL 159
>tr|A9S6F7|A9S6F7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_163092 PE=3 SV=1 Length = 160
Score = 89.7 bits (221), Expect = 6e-17 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 1/52 (1%) Frame = +2
Query: 2 SAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 154 +AHVSP FRVKEGDKVIIGQCRPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 109 AAHVSPAFRVKEGDKVIIGQCRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|A9RQ30|A9RQ30_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_161124 PE=3 SV=1 Length = 160
Score = 89.7 bits (221), Expect = 6e-17 Identities = 44/52 (84%), Positives = 48/52 (92%), Gaps = 1/52 (1%) Frame = +2
Query: 2 SAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGG-KKAFTAM 154 +AHVSP FRVKEGDKVIIGQCRPLSKTVRFNVLKV PMGA++GG KK FTA+ Sbjct: 109 AAHVSPAFRVKEGDKVIIGQCRPLSKTVRFNVLKVIPMGASDGGNKKVFTAV 160
>tr|B6T2A5|B6T2A5_MAIZE 40S ribosomal protein S11 OS=Zea mays PE=2 SV=1 Length = 159
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/49 (83%), Positives = 44/49 (89%) Frame = +2
Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 151 AH+SPCFRVKEGD VIIGQCRPLSKTVRFNV+KV P G+A GKKAFTA Sbjct: 110 AHISPCFRVKEGDHVIIGQCRPLSKTVRFNVVKVIPAGSAAAGKKAFTA 158
>tr|B3TM43|B3TM43_ELAGV 40S ribosomal protein S11 OS=Elaeis guineensis var. tenera PE=2 SV=1 Length = 159
Score = 89.0 bits (219), Expect = 1e-16 Identities = 41/51 (80%), Positives = 45/51 (88%) Frame = +2
Query: 2 SAHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154 +AH+SPCFRVKEGD VIIGQCRPLSKTVRFNVLKV P G+ GGKKAF A+ Sbjct: 109 AAHISPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSKGGGKKAFAAV 159
>tr|B7FMB4|B7FMB4_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 87.8 bits (216), Expect = 2e-16 Identities = 43/51 (84%), Positives = 45/51 (88%), Gaps = 1/51 (1%) Frame = +2
Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 154 AHVSPCFRVKEGD VIIGQCRPLSKTVRFNVLKV P G++ G GKKAFT M Sbjct: 110 AHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|B7FGL2|B7FGL2_MEDTR Putative uncharacterized protein OS=Medicago truncatula PE=2 SV=1 Length = 160
Score = 87.8 bits (216), Expect = 2e-16 Identities = 43/51 (84%), Positives = 45/51 (88%), Gaps = 1/51 (1%) Frame = +2
Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEG-GKKAFTAM 154 AHVSPCFRVKEGD VIIGQCRPLSKTVRFNVLKV P G++ G GKKAFT M Sbjct: 110 AHVSPCFRVKEGDHVIIGQCRPLSKTVRFNVLKVIPAGSSSGAGKKAFTGM 160
>tr|Q0J7A8|Q0J7A8_ORYSJ Os08g0207000 protein (Fragment) OS=Oryza sativa subsp. japonica GN=Os08g0207000 PE=3 SV=1 Length = 55
Score = 87.4 bits (215), Expect = 3e-16 Identities = 40/49 (81%), Positives = 43/49 (87%) Frame = +2
Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 151 AH+SPCFRVKEGD VIIGQCRPLSKTVRFNV+KV P G+ GGKKAF A Sbjct: 6 AHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAFIA 54
>tr|B8BBW4|B8BBW4_ORYSI Putative uncharacterized protein OS=Oryza sativa subsp. indica GN=OsI_28229 PE=4 SV=1 Length = 159
Score = 87.4 bits (215), Expect = 3e-16 Identities = 40/49 (81%), Positives = 43/49 (87%) Frame = +2
Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTA 151 AH+SPCFRVKEGD VIIGQCRPLSKTVRFNV+KV P G+ GGKKAF A Sbjct: 110 AHISPCFRVKEGDHVIIGQCRPLSKTVRFNVIKVIPAGSTGGGKKAFIA 158
>tr|A9PC56|A9PC56_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=2 SV=1 Length = 159
Score = 87.0 bits (214), Expect = 4e-16 Identities = 39/50 (78%), Positives = 44/50 (88%) Frame = +2
Query: 5 AHVSPCFRVKEGDKVIIGQCRPLSKTVRFNVLKVFPMGAAEGGKKAFTAM 154 AH+SPCFR++EGD V IGQCRPLSKTVRFNVLKV P G++ G KKAFTAM Sbjct: 110 AHISPCFRIREGDHVTIGQCRPLSKTVRFNVLKVIPAGSSGGAKKAFTAM 159
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