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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944063
Clone id YMU02A01NGRL0004_N21
Library
Length 398
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_N21. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGTACCTCAATGAAGCTGCACTTGGAGAGGCGAACGAAGATTCTATTAAGCAGGGCACG
TTCTAGTAGATTTGGTTGAAGAGCAACCATCCATGGTTGTCCATCACCACGATGTGTTGC
ACCACTATGCTACACCAGGACGAAAGGAGAGGGGCTTGTTGCATGAAGGGGATCAGAGTG
AGAGCATGAGAGTGTATGCGCCAAGAACAGATGGTGGATGATAGATGGTCTGTTTACGAA
ACATGTAGGAAAACCTCATGCCGTACCTCGCCCCCATGGAATTTGTTGCGAGGCATGGGC
AAGCTTCTTTGGTTTCTATTATCCTGTTTGTATTTCATTTCTCTTTCAGATTGAAATTTA
TGTGAAAAGGCTATTGCAACGAANAANAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q9ZT00
Definition sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase activase, chloroplastic OS=Zea mays
Align length 21
Score (bit) 39.3
E-value 0.006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944063|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_N21, 5'
         (381 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase ...    39   0.006
sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase ...    39   0.008
sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase...    38   0.018
sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase ...    37   0.023
sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase...    37   0.030
sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase...    35   0.15 
sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase ...    34   0.25 
sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase...    33   0.43 
sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase ...    33   0.57 
sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase ...    32   1.3  
sp|P10896|RCA_ARATH Ribulose bisphosphate carboxylase/oxygenase ...    32   1.3  
sp|Q40073|RCAA_HORVU Ribulose bisphosphate carboxylase/oxygenase...    31   1.7  
sp|Q40565|RCA2_TOBAC Ribulose bisphosphate carboxylase/oxygenase...    30   2.8  
sp|Q54QS0|U555_DICDI UPF0555 protein OS=Dictyostelium discoideum...    29   8.2  
sp|Q3TLI0|TPC10_MOUSE Trafficking protein particle complex subun...    29   8.2  
sp|P48553|TPC10_HUMAN Trafficking protein particle complex subun...    29   8.2  

>sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Zea mays GN=RCA1 PE=2 SV=3
          Length = 433

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYLNEAALGEANED++K G+F
Sbjct: 411 KYLNEAALGEANEDAMKTGSF 431


>sp|O98997|RCA_PHAAU Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Phaseolus aureus GN=RCA PE=2
           SV=2
          Length = 439

 Score = 38.9 bits (89), Expect = 0.008
 Identities = 17/21 (80%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYLNEAALG ANED+IK G+F
Sbjct: 417 KYLNEAALGNANEDAIKSGSF 437


>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 2, chloroplastic OS=Larrea tridentata GN=RCA2
           PE=2 SV=1
          Length = 435

 Score = 37.7 bits (86), Expect = 0.018
 Identities = 15/21 (71%), Positives = 21/21 (100%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KY++EAALG+AN+D+IK+GTF
Sbjct: 415 KYMSEAALGDANQDAIKRGTF 435


>sp|O64981|RCA_PHAVU Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Phaseolus vulgaris GN=RCA1
           PE=2 SV=1
          Length = 441

 Score = 37.4 bits (85), Expect = 0.023
 Identities = 16/21 (76%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           +YLNEAALG ANED+IK G+F
Sbjct: 419 QYLNEAALGNANEDAIKSGSF 439


>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 1, chloroplastic OS=Larrea tridentata GN=RCA1
           PE=2 SV=1
          Length = 476

 Score = 37.0 bits (84), Expect = 0.030
 Identities = 15/21 (71%), Positives = 20/21 (95%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KY++EAALG+AN D+IK+GTF
Sbjct: 415 KYMSEAALGDANNDAIKRGTF 435


>sp|Q42450|RCAB_HORVU Ribulose bisphosphate carboxylase/oxygenase
           activase B, chloroplastic OS=Hordeum vulgare GN=RCAB
           PE=2 SV=1
          Length = 425

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYL+EAALG+AN+D++K G F
Sbjct: 402 KYLSEAALGQANDDAMKTGAF 422


>sp|Q40281|RCA_MALDO Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Malus domestica GN=RCA PE=2
           SV=1
          Length = 437

 Score = 33.9 bits (76), Expect = 0.25
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYL+EAALG+AN D++  GTF
Sbjct: 415 KYLSEAALGDANSDAMNTGTF 435


>sp|Q40460|RCA1_TOBAC Ribulose bisphosphate carboxylase/oxygenase
           activase 1, chloroplastic OS=Nicotiana tabacum PE=2 SV=1
          Length = 442

 Score = 33.1 bits (74), Expect = 0.43
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYL EAALG+AN D+I  G+F
Sbjct: 419 KYLKEAALGDANADAINNGSF 439


>sp|P93431|RCA_ORYSJ Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Oryza sativa subsp. japonica
           GN=RCA PE=1 SV=2
          Length = 466

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 13/21 (61%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           +YL+EAALG+AN D++K G+F
Sbjct: 406 QYLSEAALGDANSDAMKTGSF 426


>sp|P10871|RCA_SPIOL Ribulose bisphosphate carboxylase/oxygenase
           activase, chloroplastic OS=Spinacia oleracea PE=1 SV=2
          Length = 472

 Score = 31.6 bits (70), Expect = 1.3
 Identities = 12/21 (57%), Positives = 19/21 (90%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           +Y++ AALG+AN+D+I +GTF
Sbjct: 413 QYMSSAALGDANKDAIDRGTF 433
tr_hit_id Q9AXG0
Definition tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium hirsutum
Align length 21
Score (bit) 40.0
E-value 0.059
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944063|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_N21, 5'
         (381 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...    40   0.059
tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment) OS=Goss...    40   0.059
tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...    40   0.059
tr|A9NXN4|A9NXN4_PICSI Putative uncharacterized protein OS=Picea...    40   0.059
tr|A9NX94|A9NX94_PICSI Putative uncharacterized protein OS=Picea...    40   0.059
tr|A9NV87|A9NV87_PICSI Putative uncharacterized protein OS=Picea...    40   0.059
tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase ...    40   0.077
tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genom...    40   0.077
tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate carboxylase/oxy...    39   0.10 
tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygena...    39   0.10 
tr|A8QIH7|A8QIH7_MORAL Chloroplast ribulose-1,5-bisphosphate car...    39   0.10 
tr|A7PNR4|A7PNR4_VITVI Chromosome chr8 scaffold_23, whole genome...    38   0.29 
tr|A9PJ06|A9PJ06_POPJC Putative uncharacterized protein OS=Popul...    37   0.38 
tr|A9PGU7|A9PGU7_POPTR Putative uncharacterized protein OS=Popul...    37   0.38 
tr|Q06B51|Q06B51_ACERU Chloroplast ribulose-1,5-bisphosphate car...    37   0.50 
tr|Q06B50|Q06B50_ACERU Chloroplast ribulose-1,5-bisphosphate car...    37   0.50 
tr|Q06B49|Q06B49_ACERU Chloroplast ribulose-1,5-bisphosphate car...    37   0.50 
tr|Q06B48|Q06B48_ACERU Chloroplast ribulose-1,5-bisphosphate car...    37   0.50 
tr|A9PG25|A9PG25_POPTR Putative uncharacterized protein OS=Popul...    37   0.50 
tr|A9PFQ2|A9PFQ2_POPTR Putative uncharacterized protein OS=Popul...    37   0.50 
tr|B4QBR9|B4QBR9_DROSI GD11321 OS=Drosophila simulans GN=GD11321...    37   0.63 
tr|A7NYV5|A7NYV5_VITVI Chromosome chr6 scaffold_3, whole genome ...    37   0.65 
tr|A5C3D4|A5C3D4_VITVI Putative uncharacterized protein OS=Vitis...    37   0.65 
tr|Q9ATC2|Q9ATC2_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    36   0.85 
tr|Q9ATC1|Q9ATC1_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    36   0.85 
tr|Q9ATC0|Q9ATC0_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    36   0.85 
tr|Q9ATB9|Q9ATB9_ZANAE Rubisco activase (Fragment) OS=Zantedesch...    36   0.85 
tr|Q9AXG1|Q9AXG1_GOSHI Ribulose-1,5-bisphosphate carboxylase/oxy...    36   1.1  
tr|Q8L5W4|Q8L5W4_GOSHI Rubisco activase beta (Fragment) OS=Gossy...    36   1.1  
tr|Q19RP2|Q19RP2_9MAGN Ribulose-1,5-bisphosphate carboxylase/oxy...    36   1.1  

>tr|Q9AXG0|Q9AXG0_GOSHI Ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase 2 (Fragment) OS=Gossypium
           hirsutum PE=2 SV=1
          Length = 435

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYL+EAALGEANEDSI +GTF
Sbjct: 376 KYLSEAALGEANEDSINRGTF 396


>tr|Q8L5W3|Q8L5W3_GOSHI Rubisco activase alpha (Fragment)
          OS=Gossypium hirsutum GN=RCA PE=4 SV=1
          Length = 76

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +1

Query: 1  KYLNEAALGEANEDSIKQGTF 63
          KYL+EAALGEANEDSI +GTF
Sbjct: 17 KYLSEAALGEANEDSINRGTF 37


>tr|Q308Y6|Q308Y6_GOSHI Ribulose-1,5-bisphosphate
           carboxylase/oxygenase activase alpha 2 OS=Gossypium
           hirsutum PE=2 SV=1
          Length = 421

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 18/21 (85%), Positives = 20/21 (95%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYL+EAALGEANEDSI +GTF
Sbjct: 362 KYLSEAALGEANEDSINRGTF 382


>tr|A9NXN4|A9NXN4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 310

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 17/21 (80%), Positives = 21/21 (100%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KY++EAALG+ANEDSIK+GTF
Sbjct: 288 KYMSEAALGDANEDSIKRGTF 308


>tr|A9NX94|A9NX94_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 440

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 17/21 (80%), Positives = 21/21 (100%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KY++EAALG+ANEDSIK+GTF
Sbjct: 418 KYMSEAALGDANEDSIKRGTF 438


>tr|A9NV87|A9NV87_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 480

 Score = 40.0 bits (92), Expect = 0.059
 Identities = 17/21 (80%), Positives = 21/21 (100%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KY++EAALG+ANEDSIK+GTF
Sbjct: 418 KYMSEAALGDANEDSIKRGTF 438


>tr|Q8VYX9|Q8VYX9_PEA Ultraviolet-B-repressible rubisco activase
          (Fragment) OS=Pisum sativum PE=2 SV=1
          Length = 50

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 17/21 (80%), Positives = 21/21 (100%)
 Frame = +1

Query: 1  KYLNEAALGEANEDSIKQGTF 63
          KYL+EAALG+ANED+IK+GTF
Sbjct: 30 KYLSEAALGDANEDAIKRGTF 50


>tr|A7PIQ8|A7PIQ8_VITVI Chromosome chr13 scaffold_17, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00018440001
           PE=4 SV=1
          Length = 438

 Score = 39.7 bits (91), Expect = 0.077
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYLNEAALG+ANED+IK G+F
Sbjct: 416 KYLNEAALGDANEDAIKSGSF 436


>tr|Q9FUI0|Q9FUI0_MAIZE Ribulose 1,5-bisphosphate
           carboxylase/oxygenase activase (Fragment) OS=Zea mays
           PE=2 SV=2
          Length = 308

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYLNEAALGEANED++K G+F
Sbjct: 286 KYLNEAALGEANEDAMKTGSF 306


>tr|B6T416|B6T416_MAIZE Ribulose bisphosphate carboxylase/oxygenase
           activase OS=Zea mays PE=2 SV=1
          Length = 433

 Score = 39.3 bits (90), Expect = 0.10
 Identities = 17/21 (80%), Positives = 20/21 (95%)
 Frame = +1

Query: 1   KYLNEAALGEANEDSIKQGTF 63
           KYLNEAALGEANED++K G+F
Sbjct: 411 KYLNEAALGEANEDAMKTGSF 431