NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944067
Clone id YMU02A01NGRL0004_O02
Library
Length 132
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_O02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCCCAAGTAGCATGGGGCACGCAAAATCCCGTGTGAATCAGCGAGGACCACCTTGTAAGG
CTAAATATTCCTGAGTGACCGATAGCGAAGCAGTACCGTGAGAAAAAAAAAAAAAAAAAA
AAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944067|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O02, 5'
         (102 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done

 ***** No hits found ******
tr_hit_id A6H5B5
Definition tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Fragment) OS=Vigna unguiculata
Align length 32
Score (bit) 60.5
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944067|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O02, 5'
         (102 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I (Frag...    60   4e-08
tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment) ...    60   4e-08
tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    60   4e-08
tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    60   4e-08
tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment) OS=...    60   4e-08
tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1            59   2e-07
tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome...    53   7e-06
tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein OS=Roseo...    48   2e-04
tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein OS=Magne...    48   3e-04
tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragmen...    46   8e-04
tr|B3D9S8|B3D9S8_BURM1 Putative uncharacterized protein OS=Burkh...    46   0.001
tr|Q8CM43|Q8CM43_VIBVU Putative uncharacterized protein OS=Vibri...    45   0.002
tr|Q8CM40|Q8CM40_VIBVU Putative uncharacterized protein OS=Vibri...    45   0.002
tr|B2PX01|B2PX01_PROST Putative uncharacterized protein OS=Provi...    45   0.002
tr|B1N6J9|B1N6J9_9PROT Putative uncharacterized protein OS=uncul...    45   0.002
tr|Q0JIM3|Q0JIM3_ORYSJ Photosystem I P700 chlorophyll A apoprote...    44   0.003
tr|A5ZI73|A5ZI73_9BACE Putative uncharacterized protein OS=Bacte...    43   0.007
tr|B5HI44|B5HI44_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5HGU7|B5HGU7_STRPR Putative uncharacterized protein OS=Strep...    43   0.009
tr|B5H7Z0|B5H7Z0_STRPR Putative uncharacterized protein (Fragmen...    43   0.009
tr|B4VCZ2|B4VCZ2_9ACTO Putative uncharacterized protein OS=Strep...    43   0.009
tr|B4V209|B4V209_9ACTO Putative uncharacterized protein (Fragmen...    43   0.009
tr|B5G7E5|B5G7E5_9ACTO Putative uncharacterized protein (Fragmen...    41   0.027
tr|B0NEX9|B0NEX9_EUBSP Putative uncharacterized protein OS=Clost...    39   0.17 
tr|B0MI66|B0MI66_9FIRM Putative uncharacterized protein (Fragmen...    39   0.17 
tr|Q1MP77|Q1MP77_LAWIP Putative uncharacterized protein LI1146 O...    38   0.23 
tr|A7B6K6|A7B6K6_RUMGN Putative uncharacterized protein OS=Rumin...    38   0.23 
tr|A7B5W9|A7B5W9_RUMGN Putative uncharacterized protein OS=Rumin...    38   0.23 
tr|Q57T06|Q57T06_SALCH Putative uncharacterized protein OS=Salmo...    38   0.30 
tr|Q57J74|Q57J74_SALCH Putative uncharacterized protein OS=Salmo...    38   0.30 

>tr|A6H5B5|A6H5B5_VIGUN Putative ATP synthase CF0 subunit I
           (Fragment) OS=Vigna unguiculata GN=atpF PE=2 SV=1
          Length = 52

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +3

Query: 3   PSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 98
           PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 16  PSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 47


>tr|A6H5B3|A6H5B3_VIGUN Putative ribosomal protein S3 (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 79

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +3

Query: 3   PSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 98
           PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 45  PSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 76


>tr|A6H595|A6H595_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 87

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +3

Query: 3   PSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 98
           PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 51  PSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 82


>tr|A6H594|A6H594_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 90

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +3

Query: 3   PSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 98
           PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 54  PSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 85


>tr|A6H593|A6H593_VIGUN Putative 23S ribosomal RNA (Fragment)
           OS=Vigna unguiculata GN=rrn23 PE=2 SV=1
          Length = 85

 Score = 60.5 bits (145), Expect = 4e-08
 Identities = 27/32 (84%), Positives = 29/32 (90%)
 Frame = +3

Query: 3   PSSMGHAKSRVNQRGPPCKAKYS*VTDSEAVP 98
           PSSMGH +SRVNQ+GPPCKAKYS VTDSE VP
Sbjct: 49  PSSMGHVESRVNQQGPPCKAKYSWVTDSEVVP 80


>tr|A4QMC0|A4QMC0_PINKO ORF44l OS=Pinus koraiensis PE=4 SV=1
          Length = 44

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 26/32 (81%), Positives = 27/32 (84%)
 Frame = -2

Query: 101 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 6
           SRY FAIGH G+FSL RWS LIHTGF VPHAT
Sbjct: 9   SRYYFAIGHPGVFSLARWSLLIHTGFHVPHAT 40


>tr|A7PTD9|A7PTD9_VITVI Chromosome chr8 scaffold_29, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023317001
           PE=4 SV=1
          Length = 390

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 24/32 (75%), Positives = 25/32 (78%)
 Frame = -2

Query: 101 SRYCFAIGHSGIFSLTRWSSLIHTGFCVPHAT 6
           SRY FAI H  +FSL RWS LIHTGF VPHAT
Sbjct: 241 SRYYFAISHPEVFSLARWSLLIHTGFHVPHAT 272


>tr|A6FJV5|A6FJV5_9RHOB Putative uncharacterized protein
           OS=Roseobacter sp. AzwK-3b GN=RAZWK3B_00595 PE=4 SV=1
          Length = 101

 Score = 48.1 bits (113), Expect = 2e-04
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -3

Query: 100 HGTASLSVTQEYLALQGGPR*FTRDFACPMLL 5
           HGT SLSV++EYLA +GGP  F +DF CP LL
Sbjct: 33  HGTGSLSVSKEYLAFEGGPPIFRQDFTCPALL 64


>tr|Q3BKI1|Q3BKI1_9PROT Putative uncharacterized protein
           OS=Magnetospirillum gryphiswaldense GN=mgI387 PE=4 SV=1
          Length = 259

 Score = 47.8 bits (112), Expect = 3e-04
 Identities = 21/32 (65%), Positives = 25/32 (78%)
 Frame = -3

Query: 100 HGTASLSVTQEYLALQGGPR*FTRDFACPMLL 5
           HGT+SLSVT+EYL L+ GP  F +DF CP LL
Sbjct: 109 HGTSSLSVTEEYLGLEDGPPMFRQDFTCPALL 140


>tr|A2PD90|A2PD90_VIBCH Putative uncharacterized protein (Fragment)
           OS=Vibrio cholerae 1587 GN=A55_B0049 PE=4 SV=1
          Length = 171

 Score = 46.2 bits (108), Expect = 8e-04
 Identities = 21/32 (65%), Positives = 24/32 (75%)
 Frame = -3

Query: 100 HGTASLSVTQEYLALQGGPR*FTRDFACPMLL 5
           HGT SLSV+QEYLAL+ GP  F +D  CP LL
Sbjct: 25  HGTGSLSVSQEYLALEDGPPIFRQDITCPALL 56