NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944070
Clone id YMU02A01NGRL0004_O06
Library
Length 624
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_O06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGCACAGATCTGCTTAGCCAGCTCAACTTGTGTCCTCTCCAACTCCTACTTTCATCTTT
CCTTCCGGCATGGCTGCCTCCGCCACATGCAGCGTCCCCATCAGAATGATTGGCATGCCT
TGTGCTAAATATCAAAGAAATCTCCAGTCCCAGAATGTAGTCTCGTCCTCTCGATTCACC
CACAGCCACATCATTAAGGCTGCACAGACGCAGTCCGCTCCTCGCACACGCGAAACGGAG
AACGTATCGCTCAAGGGTGATGCAGAGGATGCTGCCTTGAAGGTATTTGCTGATGATACA
AAAGGAATTGTATGCTATCGAACAGAGTCTGGTGAAATCGTTTGTGAGGGCATGGATGAG
GGCCCTCAGTTCTATCCTCCTTCTGGGGCGAACTTCTACATGCCCGATACTCGAGCTGCT
GCTATCCTTCCTCTGCTAGGAGAGGTTATGTATGAAATCTAAGATTACAAAGGCGTCGTG
GGCTTTTCTTGTTCTTCAAGATAAGCATAAGCTTTTGCGAACTTGATGATGTGGGGAGTA
GTTGTAATCCAGAGTAAGCAAAGGTTAATTCACTTATAGAGAGATTATTATCTTAAGTGT
GGTTGGAACTTGACCTGTATATTA
■■Homology search results ■■ -
sp_hit_id Q9ER58
Definition sp|Q9ER58|TICN2_MOUSE Testican-2 OS=Mus musculus
Align length 35
Score (bit) 32.3
E-value 2.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944070|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O06, 5'
         (624 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q9ER58|TICN2_MOUSE Testican-2 OS=Mus musculus GN=Spock2 PE=2 ...    32   2.0  
sp|A6VQ42|RNFC_ACTSZ Electron transport complex protein rnfC OS=...    32   3.5  
sp|Q92563|TICN2_HUMAN Testican-2 OS=Homo sapiens GN=SPOCK2 PE=1 ...    31   4.5  
sp|B1XLW1|Y2658_SYNP2 PKHD-type hydroxylase SYNPCC7002_A2658 OS=...    31   4.5  
sp|O57030|RPOB_NPVSL Probable DNA-directed RNA polymerase subuni...    31   5.9  
sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapie...    30   7.7  
sp|Q46078|KPYK_CORGL Pyruvate kinase OS=Corynebacterium glutamic...    30   7.7  

>sp|Q9ER58|TICN2_MOUSE Testican-2 OS=Mus musculus GN=Spock2 PE=2
           SV=1
          Length = 423

 Score = 32.3 bits (72), Expect = 2.0
 Identities = 16/35 (45%), Positives = 21/35 (60%)
 Frame = -3

Query: 418 QLEYRACRSSPQKEDRTEGPHPCPHKRFHQTLFDS 314
           +LE +AC SS Q   R EGP PCP ++   +  DS
Sbjct: 160 KLEQQACLSSKQLAVRCEGPCPCPTEQSTASTTDS 194


>sp|A6VQ42|RNFC_ACTSZ Electron transport complex protein rnfC
           OS=Actinobacillus succinogenes (strain ATCC 55618 /
           130Z) GN=rnfC PE=3 SV=1
          Length = 703

 Score = 31.6 bits (70), Expect = 3.5
 Identities = 30/101 (29%), Positives = 44/101 (43%)
 Frame = +1

Query: 124 AKYQRNLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTK 303
           A+ Q N  S   VSS+  + S  I A  T S P+T + +      D + AA+ V     K
Sbjct: 554 ARQQTNGNSP--VSSASNSDSATISADNTHSTPKTAQNQTAP---DPKKAAVAVAIARAK 608

Query: 304 GIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMPDTRAAAI 426
                +T +GE V E + E       +  N   PD + AA+
Sbjct: 609 AKKAAQTTTGETVTENVTE------KTAQNPTAPDPKKAAV 643


>sp|Q92563|TICN2_HUMAN Testican-2 OS=Homo sapiens GN=SPOCK2 PE=1
           SV=1
          Length = 424

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 14/24 (58%), Positives = 16/24 (66%)
 Frame = -3

Query: 418 QLEYRACRSSPQKEDRTEGPHPCP 347
           +LE +AC SS Q   R EGP PCP
Sbjct: 160 KLEQQACLSSKQLAVRCEGPCPCP 183


>sp|B1XLW1|Y2658_SYNP2 PKHD-type hydroxylase SYNPCC7002_A2658
           OS=Synechococcus sp. (strain ATCC 27264 / PCC 7002 /
           PR-6) GN=SYNPCC7002_A2658 PE=3 SV=1
          Length = 219

 Score = 31.2 bits (69), Expect = 4.5
 Identities = 17/61 (27%), Positives = 26/61 (42%)
 Frame = +1

Query: 229 RETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMPD 408
           R T+N  + G   D +  +F ++         E GE+V EG D    +  P+G     P 
Sbjct: 95  RHTDNALMNGMRSDVSFTLFLNEPSDY-----EGGELVIEGADSEQSYKLPAGTAIAYPS 149

Query: 409 T 411
           T
Sbjct: 150 T 150


>sp|O57030|RPOB_NPVSL Probable DNA-directed RNA polymerase subunit
           beta OS=Spodoptera littoralis nuclear polyhedrosis virus
           GN=LEF-8 PE=3 SV=1
          Length = 909

 Score = 30.8 bits (68), Expect = 5.9
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 6/51 (11%)
 Frame = -1

Query: 186 AVGESRGRDYILGLEISLIFST------RHANHSDGDAACGGGSHAGRKDE 52
           AV ES GR  +L   + ++F T      R    S GDA CGGG   G +D+
Sbjct: 50  AVDESTGR-CVLHRCVLIVFGTWLDKKFRKKEFSGGDATCGGGGGDGDQDQ 99


>sp|A0JNW5|UH1BL_HUMAN UHRF1-binding protein 1-like OS=Homo sapiens
            GN=UHRF1BP1L PE=1 SV=2
          Length = 1464

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 1/85 (1%)
 Frame = +1

Query: 139  NLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAEDAAL-KVFADDTKGIVC 315
            N  S N   S   +H  +      +SA  T   + +S      D  L K+  D++ G+V 
Sbjct: 926  NHMSDNRSMSVDLSHIPLKDPLLFKSASDTNLQKGISFMDYLSDKHLGKISEDESSGLV- 984

Query: 316  YRTESGEIVCEGMDEGPQFYPPSGA 390
            Y++ SGEI  E  D+   FY  S +
Sbjct: 985  YKSGSGEIGSETSDKKDSFYTDSSS 1009


>sp|Q46078|KPYK_CORGL Pyruvate kinase OS=Corynebacterium glutamicum
           GN=pyk PE=1 SV=1
          Length = 475

 Score = 30.4 bits (67), Expect = 7.7
 Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = +1

Query: 226 TRETENVSLKGDAEDAAL--KVFADDTK-GIVCYRTESGEIVCEGMDEGP 366
           T +  + + K  A+DA    ++  DD K G+VC   E  +++CE ++ GP
Sbjct: 101 THDRVSTTYKNLAKDAKPGDRLLVDDGKVGLVCVSVEGNDVICEVVEGGP 150
tr_hit_id A7P6B3
Definition tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome shotgun sequence OS=Vitis vinifera
Align length 60
Score (bit) 56.6
E-value 1.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944070|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O06, 5'
         (624 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome ...    57   1e-06
tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis...    57   1e-06
tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subs...    55   3e-06
tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|A2YA82|A2YA82_ORYSI Putative uncharacterized protein OS=Oryza...    55   3e-06
tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella paten...    54   1e-05
tr|Q9LUL9|Q9LUL9_ARATH Genomic DNA, chromosome 3, P1 clone: MLN2...    53   1e-05
tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medic...    53   1e-05
tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea m...    53   2e-05
tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|A9S8K3|A9S8K3_PHYPA Predicted protein OS=Physcomitrella paten...    52   3e-05
tr|A9NNE4|A9NNE4_PICSI Putative uncharacterized protein OS=Picea...    51   6e-05
tr|A9TMJ3|A9TMJ3_PHYPA Predicted protein OS=Physcomitrella paten...    50   1e-04
tr|Q0DX03|Q0DX03_ORYSJ Os02g0782900 protein OS=Oryza sativa subs...    48   5e-04
tr|Q94HC7|Q94HC7_ORYSJ Putative uncharacterized protein OSJNBb00...    47   7e-04
tr|B8BGM6|B8BGM6_ORYSI Putative uncharacterized protein OS=Oryza...    47   7e-04
tr|Q6K7E4|Q6K7E4_ORYSJ Putative uncharacterized protein OJ1311_D...    46   0.002
tr|A3AC06|A3AC06_ORYSJ Putative uncharacterized protein OS=Oryza...    37   1.3  
tr|B0WC24|B0WC24_CULQU Putative uncharacterized protein OS=Culex...    37   1.3  

>tr|A7P6B3|A7P6B3_VITVI Chromosome chr9 scaffold_7, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00034001001
           PE=4 SV=1
          Length = 105

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 30/60 (50%), Positives = 37/60 (61%)
 Frame = +1

Query: 280 KVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMPDTRAAAILPLLGEVMYEI 459
           KVF D +KGIVCYR + GEIVCEG DEGP+ +       Y P  R A I+ LL +   +I
Sbjct: 25  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKNYHP--RDAEIIDLLQQNWLQI 82


>tr|A5C676|A5C676_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_043719 PE=4 SV=1
          Length = 133

 Score = 56.6 bits (135), Expect = 1e-06
 Identities = 30/60 (50%), Positives = 37/60 (61%)
 Frame = +1

Query: 280 KVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMPDTRAAAILPLLGEVMYEI 459
           KVF D +KGIVCYR + GEIVCEG DEGP+ +       Y P  R A I+ LL +   +I
Sbjct: 53  KVFEDQSKGIVCYRDDKGEIVCEGYDEGPRLHHELQRKNYHP--RDAEIIDLLQQNWLQI 110


>tr|Q69Y53|Q69Y53_ORYSJ Os06g0193300 protein OS=Oryza sativa subsp.
           japonica GN=P0698A06.24 PE=2 SV=1
          Length = 127

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +1

Query: 196 KAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 369
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 23  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 80


>tr|A3B979|A3B979_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_019601 PE=4 SV=1
          Length = 133

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +1

Query: 196 KAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 369
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 23  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 80


>tr|A2YA82|A2YA82_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_21995 PE=4 SV=1
          Length = 128

 Score = 55.1 bits (131), Expect = 3e-06
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +1

Query: 196 KAAQTQSAPRTRETENVSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQ 369
           KAA    AP    T +  L   A  A  KVF D  +GIVCYR + GE+VCEG DEGP+
Sbjct: 24  KAALRFRAPAHGGTSSSQLSIAAATANKKVFEDQLRGIVCYRDDKGEMVCEGYDEGPR 81


>tr|A9TQX1|A9TQX1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_171438 PE=4 SV=1
          Length = 153

 Score = 53.5 bits (127), Expect = 1e-05
 Identities = 29/86 (33%), Positives = 43/86 (50%)
 Frame = +1

Query: 121 CAKYQRNLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVSLKGDAEDAALKVFADDT 300
           CA    ++ S+N   S R     ++  +   S    R +  V   G   +    VF D++
Sbjct: 12  CASPPISISSRNPPPSQRLATVKMVPKSLRLSI--CRASSEVGPAGVIPEKESTVFKDES 69

Query: 301 KGIVCYRTESGEIVCEGMDEGPQFYP 378
           +GI+CY  E+G+I CEG DEGP F P
Sbjct: 70  QGIICYYDENGDITCEGWDEGPHFQP 95


>tr|Q9LUL9|Q9LUL9_ARATH Genomic DNA, chromosome 3, P1 clone: MLN21
           (Putative uncharacterized protein At3g14280) (At3g14280)
           OS=Arabidopsis thaliana GN=At3g14280 PE=2 SV=1
          Length = 141

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 37/132 (28%), Positives = 62/132 (46%)
 Frame = +1

Query: 70  MAASATCSVPIRMIGMPCAKYQRNLQSQNVVSSSRFTHSHIIKAAQTQSAPRTRETENVS 249
           MA S    +P++    PC    + ++++ ++      H  + KA  +Q  P    T+N+ 
Sbjct: 1   MAYSTKLYLPLKT---PCF-VPKTVRAKTLMLQQSQVHVKVKKATVSQPQPIRYSTKNI- 55

Query: 250 LKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYMPDTRAAAIL 429
                      VF D  +GI+CY  ++GE++CEG DEGP+   P+ +      +R   IL
Sbjct: 56  -----------VFEDPIQGIICYTDDNGEVICEGYDEGPRC--PTQSPMVASYSREVEIL 102

Query: 430 PLLGEVMYEI*D 465
            LL     E+ D
Sbjct: 103 DLLQRSYQELSD 114


>tr|B7FMF3|B7FMF3_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 133

 Score = 53.1 bits (126), Expect = 1e-05
 Identities = 28/72 (38%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
 Frame = +1

Query: 217 APRTRETEN-VSLKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGAN 393
           AP+ + T   V LK  A      V+ D+++GI+CY+ ESGEI+CEG DEGP +   S   
Sbjct: 35  APKKKSTVGPVLLKITASIKNKVVYEDESQGIICYQDESGEIICEGYDEGPSYRQISRPT 94

Query: 394 FYMPDTRAAAIL 429
            +  D     +L
Sbjct: 95  HHQRDVEIVNLL 106


>tr|B6UGC8|B6UGC8_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 130

 Score = 52.8 bits (125), Expect = 2e-05
 Identities = 30/86 (34%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
 Frame = +1

Query: 115 MPCAKYQRNLQSQNVVSSSRFTHSHI-IKAAQTQSAPRTRETENVSLKGDAEDAALKVFA 291
           M C +Y  ++    +  +SR T +   I      S+   +++ +VS  G A     KV+ 
Sbjct: 6   MRCYRYSPSVAMVPMRKTSRTTMTRASISTDGCSSSEPKKKSHSVSFAGKAN----KVYE 61

Query: 292 DDTKGIVCYRTESGEIVCEGMDEGPQ 369
           D   GI+CY  E+GE+VCEG+DEGP+
Sbjct: 62  DKDMGILCYTDENGELVCEGLDEGPR 87


>tr|A9SQE0|A9SQE0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_82514 PE=4 SV=1
          Length = 104

 Score = 52.0 bits (123), Expect = 3e-05
 Identities = 23/51 (45%), Positives = 29/51 (56%)
 Frame = +1

Query: 250 LKGDAEDAALKVFADDTKGIVCYRTESGEIVCEGMDEGPQFYPPSGANFYM 402
           +K    +   +VF D++ GIVCY  E GEI CEG DEGP F P     + M
Sbjct: 9   MKNSHRNLPEQVFKDESNGIVCYVNEDGEITCEGWDEGPHFIPEPEKGYTM 59