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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944077
Clone id YMU02A01NGRL0004_O14
Library
Length 565
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_O14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
ATCTCAATTCGGGCAAGAAGGTAGCCATAGCCAACACCAGACAGTTCCGGCATCGAGGAA
GCTCTTCTTTTAGTGGGTTTTCAGGAGTCAAGAGTGATTATCAAAGATTAGCGGGTAATT
AATCTCTGCATTCCCTGCATCATCATGCAAGGCGCAGCGCTGCTCACTAGCCCCGCTGCC
ACTGCTGCTGCATTGACTCCCTGTGCTGCATTCCTGCGCTACACCTCCACAAATGTGAGG
TGTACCAGTCCCCTCCCCTTGTTTTCTTCAAGATCTCTGCAACAGAAGCGGCGCCCACTT
CTTCGTGCACAGCAACAAGATCAGGATTATGTTACCTACGATGCGAAGAAATCGGTTTTC
CCTGCTGAGGCTTGTGAAGAGCTCGGAGGTGAAGCATGTGAAGTTGATGGTGTTGGCCCT
GAGGTGAAGGGCTCTGCCTCTGCTCCCAAGCAACAATCTTCGTCGAAGGCTGGGAGTGGT
CCGGATCGGGAGTACGTGGATTACAAGGAAAACAAGACTGTCTTTCCTGGAGAGGCTTGC
GATGACCTCGGAGGTGAGTTTTGCG
■■Homology search results ■■ -
sp_hit_id Q03200
Definition sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa subsp. japonica
Align length 27
Score (bit) 48.9
E-value 2.0e-05
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944077|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O14, 5'
         (565 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa su...    49   2e-05

>sp|Q03200|LIRP1_ORYSJ Light-regulated protein OS=Oryza sativa
           subsp. japonica GN=LIR1 PE=2 SV=1
          Length = 128

 Score = 48.9 bits (115), Expect = 2e-05
 Identities = 20/27 (74%), Positives = 22/27 (81%)
 Frame = +1

Query: 484 DREYVDYKENKTVFPGEACDDLGGEFC 564
           DR+Y+ Y E  TVFP EACDDLGGEFC
Sbjct: 99  DRDYLSYDEPTTVFPEEACDDLGGEFC 125



 Score = 35.8 bits (81), Expect = 0.15
 Identities = 15/23 (65%), Positives = 17/23 (73%)
 Frame = +1

Query: 496 VDYKENKTVFPGEACDDLGGEFC 564
           VDY  N +VFP EACD +GGE C
Sbjct: 50  VDYSSNISVFPMEACDLIGGEAC 72
tr_hit_id B7FGR7
Definition tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medicago truncatula
Align length 118
Score (bit) 55.5
E-value 2.0e-06
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944077|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O14, 5'
         (565 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medic...    55   2e-06
tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genom...    55   3e-06
tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays ...    54   5e-06
tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea m...    54   5e-06
tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment) O...    54   6e-06
tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium pe...    54   6e-06
tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea...    54   6e-06
tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=...    54   8e-06
tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea...    53   1e-05
tr|A8IXK8|A8IXK8_BRACM Light regulated protein-like protein OS=B...    52   2e-05
tr|B6TXS6|B6TXS6_MAIZE Light-induced protein 1-like OS=Zea mays ...    52   3e-05
tr|B6SSM8|B6SSM8_MAIZE Light-induced protein 1-like OS=Zea mays ...    52   3e-05
tr|Q0JRG1|Q0JRG1_ORYSJ cDNA clone:J013120E23, full insert sequen...    49   2e-04
tr|A2WJN0|A2WJN0_ORYSI Putative uncharacterized protein OS=Oryza...    49   2e-04
tr|Q8S2S6|Q8S2S6_THEHA Light regulated protein-like protein OS=T...    49   3e-04
tr|A9PJL3|A9PJL3_POPJC Putative uncharacterized protein OS=Popul...    48   3e-04
tr|A9PJH2|A9PJH2_POPJC Putative uncharacterized protein OS=Popul...    48   3e-04
tr|B0L633|B0L633_CICAR GA-like protein (Fragment) OS=Cicer ariet...    48   4e-04
tr|Q84N27|Q84N27_9ROSI CCR protein OS=x Citrofortunella mitis PE...    47   6e-04
tr|Q7M1K1|Q7M1K1_CITPA Ccr protein OS=Citrus paradisi PE=4 SV=1        47   6e-04
tr|Q96500|Q96500_ARATH Putative uncharacterized protein (A.thali...    47   7e-04
tr|Q8RVJ1|Q8RVJ1_PINPS Putative cytokinin-repressed protein OS=P...    47   7e-04
tr|Q41016|Q41016_PEA GA protein OS=Pisum sativum GN=GA PE=2 SV=1       47   7e-04
tr|A7PA27|A7PA27_VITVI Chromosome chr14 scaffold_9, whole genome...    45   0.002
tr|B1Q4T3|B1Q4T3_9ROSI CCR protein OS=Bruguiera gymnorhiza PE=4 ...    35   3.7  

>tr|B7FGR7|B7FGR7_MEDTR Putative uncharacterized protein OS=Medicago
           truncatula PE=2 SV=1
          Length = 144

 Score = 55.5 bits (132), Expect = 2e-06
 Identities = 38/118 (32%), Positives = 52/118 (44%), Gaps = 1/118 (0%)
 Frame = +1

Query: 214 LRYTSTNVRCTSPLPLFSSRSLQQKRRPL-LRAQQQDQDYVTYDAKKSVFPXXXXXXXXX 390
           + + +TN+  + P  L +SRS   +   + +     D   V Y++  SVFP         
Sbjct: 21  ISHLATNL--SFPTKLIASRSSPPRYTAIKVVTDNSDPSTVDYNSAFSVFPAEACETVGG 78

Query: 391 XXXXVDGVGPEVXXXXXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFC 564
                D + PEV                   +REY+DY E KTVF  EACDDLGG FC
Sbjct: 79  DACLAD-MNPEVKLQPEARNDTPKTAASGNIEREYLDYNEPKTVFQAEACDDLGGAFC 135


>tr|A7QT69|A7QT69_VITVI Chromosome chr1 scaffold_166, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00006187001
           PE=4 SV=1
          Length = 139

 Score = 54.7 bits (130), Expect = 3e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +1

Query: 484 DREYVDYKENKTVFPGEACDDLGGEFC 564
           DREY++Y   KTVFPGEACDDLGGEFC
Sbjct: 101 DREYLEYNSPKTVFPGEACDDLGGEFC 127



 Score = 33.9 bits (76), Expect = 6.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 496 VDYKENKTVFPGEACDDLGGEFC 564
           VDY    +VFP EAC+ +GGE C
Sbjct: 52  VDYSSTTSVFPAEACEVVGGEAC 74


>tr|B6T5G1|B6T5G1_MAIZE Light-induced protein 1-like OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +1

Query: 484 DREYVDYKENKTVFPGEACDDLGGEFC 564
           DR+Y+ Y E KTVFPGEACDDLGGEFC
Sbjct: 97  DRDYLSYDEPKTVFPGEACDDLGGEFC 123



 Score = 33.5 bits (75), Expect = 8.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 496 VDYKENKTVFPGEACDDLGGEFC 564
           +DY  + +VFP EACD LGG+ C
Sbjct: 50  IDYSSSVSVFPMEACDLLGGDAC 72


>tr|B6SZ11|B6SZ11_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 125

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +1

Query: 484 DREYVDYKENKTVFPGEACDDLGGEFC 564
           DR+Y+ Y E KTVFPGEACDDLGGEFC
Sbjct: 84  DRDYLSYDEPKTVFPGEACDDLGGEFC 110


>tr|B4FN76|B4FN76_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 138

 Score = 54.3 bits (129), Expect = 5e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +1

Query: 484 DREYVDYKENKTVFPGEACDDLGGEFC 564
           DR+Y+ Y E KTVFPGEACDDLGGEFC
Sbjct: 97  DRDYLSYDEPKTVFPGEACDDLGGEFC 123



 Score = 33.5 bits (75), Expect = 8.3
 Identities = 13/23 (56%), Positives = 17/23 (73%)
 Frame = +1

Query: 496 VDYKENKTVFPGEACDDLGGEFC 564
           +DY  + +VFP EACD LGG+ C
Sbjct: 50  IDYSSSVSVFPMEACDLLGGDAC 72


>tr|Q3ZDJ4|Q3ZDJ4_PICAB Light regulated protein Lir1 (Fragment)
           OS=Picea abies GN=LIR PE=2 SV=1
          Length = 117

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 24/28 (85%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +1

Query: 484 DREYVDY-KENKTVFPGEACDDLGGEFC 564
           DREYV+Y  E KTVFPGEACDDLGGEFC
Sbjct: 74  DREYVEYASEQKTVFPGEACDDLGGEFC 101



 Score = 33.9 bits (76), Expect = 6.4
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 496 VDYKEN-KTVFPGEACDDLGGEFC 564
           VDY  + K+VFP EACD +GGE C
Sbjct: 26  VDYDSSAKSVFPAEACDTVGGEAC 49


>tr|Q3HNF6|Q3HNF6_LOLPR Light-induced protein 1-like OS=Lolium
           perenne GN=LIR1 PE=2 SV=1
          Length = 136

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 22/27 (81%), Positives = 24/27 (88%)
 Frame = +1

Query: 484 DREYVDYKENKTVFPGEACDDLGGEFC 564
           +REY+ Y E KTVFPGEACDDLGGEFC
Sbjct: 99  EREYLSYDEAKTVFPGEACDDLGGEFC 125


>tr|A9NL55|A9NL55_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 53.9 bits (128), Expect = 6e-06
 Identities = 24/28 (85%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +1

Query: 484 DREYVDY-KENKTVFPGEACDDLGGEFC 564
           DREYV+Y  E KTVFPGEACDDLGGEFC
Sbjct: 100 DREYVEYASEQKTVFPGEACDDLGGEFC 127



 Score = 33.9 bits (76), Expect = 6.4
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 496 VDYKEN-KTVFPGEACDDLGGEFC 564
           VDY  + K+VFP EACD +GGE C
Sbjct: 52  VDYDSSAKSVFPAEACDTVGGEAC 75


>tr|Q39636|Q39636_CUCSA CR9 protein OS=Cucumis sativus GN=CR9 PE=2
           SV=1
          Length = 137

 Score = 53.5 bits (127), Expect = 8e-06
 Identities = 36/103 (34%), Positives = 48/103 (46%), Gaps = 4/103 (3%)
 Frame = +1

Query: 268 SRSLQQKRRPLLRAQQ----QDQDYVTYDAKKSVFPXXXXXXXXXXXXXVDGVGPEVXXX 435
           +RS+ ++ +  L+A+     QD   V Y +  SVFP             V+ + PEV   
Sbjct: 30  TRSMPRQSKGTLKAKASAVGQDPSTVDYSSMSSVFPAEACDTVGGEACDVE-MYPEVKLK 88

Query: 436 XXXXXXXXXXXXXXXXDREYVDYKENKTVFPGEACDDLGGEFC 564
                           +REY+ Y   KTVFP EACDDLGGEFC
Sbjct: 89  PEAKKGNSVTEPV---EREYLQYDSPKTVFPAEACDDLGGEFC 128


>tr|A9NPG3|A9NPG3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 143

 Score = 52.8 bits (125), Expect = 1e-05
 Identities = 24/28 (85%), Positives = 25/28 (89%), Gaps = 1/28 (3%)
 Frame = +1

Query: 484 DREYVDY-KENKTVFPGEACDDLGGEFC 564
           DREYV+Y  E KTVFPGEACDDLGGEFC
Sbjct: 100 DREYVEYASELKTVFPGEACDDLGGEFC 127



 Score = 33.9 bits (76), Expect = 6.4
 Identities = 15/24 (62%), Positives = 18/24 (75%), Gaps = 1/24 (4%)
 Frame = +1

Query: 496 VDYKEN-KTVFPGEACDDLGGEFC 564
           VDY  + K+VFP EACD +GGE C
Sbjct: 52  VDYDSSAKSVFPAEACDTVGGEAC 75