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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944080
Clone id YMU02A01NGRL0004_O17
Library
Length 384
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_O17. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GCTCCATTTGAATGCGTGAGAGCATCTTGAGTGTCATTGTTGATGGCTTGCAACCGGGAC
AATTGTTGTTCGTGTGCTGGCAAAGCGGAAGAATTGTGCATCAGCAATGGTGATTCTCTC
GGAGCTGAGAGCATGGACTTCGAAGGGGGTGAGCTCCATTGAAGGTTTTCTTTTATTTGA
TGCTTTGTAAACCTATTCTGGCGAAGTATTCGAGCATCTCTGTGTCGAAATTGCGGATCT
GATGTGCTTCATTCCTAGCAAGAAACGATATAATATCTGTATCGTTGATGTAATTTTTGG
TGCTATGATGTTGGTTTTNAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGAAAAA
AAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q37871
Definition sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82
Align length 41
Score (bit) 31.2
E-value 1.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944080|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O17, 5'
         (319 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=n...    31   1.7  
sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage...    30   2.8  
sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680 OS=A...    30   3.7  
sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus ...    30   3.7  
sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe gr...    30   4.8  
sp|Q91081|ADRA2_LABOS Alpha-2 adrenergic receptor OS=Labrus ossi...    29   6.3  
sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C OS=Sac...    29   8.2  

>sp|Q37871|NINE_BP82 Protein ninE OS=Enterobacteria phage 82 GN=ninE
           PE=3 SV=1
          Length = 56

 Score = 31.2 bits (69), Expect = 1.7
 Identities = 14/41 (34%), Positives = 22/41 (53%)
 Frame = -2

Query: 192 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTR 70
           +YK  N+RK   EL P E+  L     ++ D ++ R A+ R
Sbjct: 13  IYKVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARR 53


>sp|Q47270|NINE_ECOLI Protein ninE homolog from lambdoid prophage
           DLP12 OS=Escherichia coli (strain K12) GN=ninE PE=3 SV=1
          Length = 56

 Score = 30.4 bits (67), Expect = 2.8
 Identities = 13/42 (30%), Positives = 23/42 (54%)
 Frame = -2

Query: 192 VYKASNKRKPSMELTPFEVHALSSERITIADAQFFRFASTRT 67
           +Y+  N+RK   EL P E+  L     ++ D ++ R A+ R+
Sbjct: 13  IYRVPNRRKRKPELKPSEIPTLLGYTASLVDKKWLRLAARRS 54


>sp|Q93Z92|RING4_ARATH E3 ubiquitin-protein ligase At4g11680
           OS=Arabidopsis thaliana GN=At4g11680 PE=2 SV=1
          Length = 390

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 14/30 (46%), Positives = 17/30 (56%), Gaps = 3/30 (10%)
 Frame = -1

Query: 127 QLRE---NHHC*CTILPLCQHTNNNCPGCK 47
           +LRE   NHH  CT +    H N+ CP CK
Sbjct: 350 ELRELPCNHHFHCTCIDKWLHINSRCPLCK 379


>sp|Q5XPI3|RN123_MOUSE E3 ubiquitin-protein ligase RNF123 OS=Mus
           musculus GN=Rnf123 PE=2 SV=1
          Length = 1314

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 15/42 (35%), Positives = 23/42 (54%)
 Frame = -3

Query: 152 SPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINNDTQ 27
           SPP +   +A    PL  HN   LP H  QL ++ + +N++Q
Sbjct: 44  SPPDRGPAAATSRKPLNFHN---LPEHVDQLLQVDSEDNESQ 82


>sp|A4R6X5|RT106_MAGGR Histone chaperone RTT106 OS=Magnaporthe
           grisea GN=RTT106 PE=3 SV=1
          Length = 468

 Score = 29.6 bits (65), Expect = 4.8
 Identities = 11/24 (45%), Positives = 17/24 (70%)
 Frame = +2

Query: 212 EHLCVEIADLMCFIPSKKRYNICI 283
           E L +EI D+   IP +K+YN+C+
Sbjct: 92  EELQLEIKDISVSIPQRKKYNLCL 115


>sp|Q91081|ADRA2_LABOS Alpha-2 adrenergic receptor OS=Labrus
           ossifagus PE=3 SV=1
          Length = 432

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 13/28 (46%), Positives = 15/28 (53%)
 Frame = -1

Query: 169 KTFNGAHPLRSPCSQLRENHHC*CTILP 86
           +T NG +   SPC   REN HC C   P
Sbjct: 237 QTENGLNKANSPCHGDRENGHCQCPPTP 264


>sp|Q03177|YMZ2_YEAST WD repeat-containing protein YMR102C
           OS=Saccharomyces cerevisiae GN=YMR102C PE=1 SV=1
          Length = 834

 Score = 28.9 bits (63), Expect = 8.2
 Identities = 12/20 (60%), Positives = 14/20 (70%)
 Frame = -1

Query: 310 HHSTKNYINDTDIISFLARN 251
           HHS  +YI +TD ISF A N
Sbjct: 563 HHSNDHYIKNTDYISFHAHN 582
tr_hit_id Q07Q99
Definition tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory transducer OS=Rhodopseudomonas palustris (strain BisA53)
Align length 33
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944080|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O17, 5'
         (319 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory trans...    35   2.4  
tr|Q2GN21|Q2GN21_CHAGB Putative uncharacterized protein OS=Chaet...    34   4.2  
tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein OS=Trypa...    33   5.4  
tr|B3MXQ3|B3MXQ3_DROAN GF19397 OS=Drosophila ananassae GN=GF1939...    33   5.4  
tr|A0E1H7|A0E1H7_PARTE Chromosome undetermined scaffold_73, whol...    33   5.4  
tr|Q6H593|Q6H593_ORYSJ Os09g0386200 protein OS=Oryza sativa subs...    33   7.1  
tr|B8BF24|B8BF24_ORYSI Putative uncharacterized protein OS=Oryza...    33   7.1  
tr|A9RSV2|A9RSV2_PHYPA Predicted protein OS=Physcomitrella paten...    33   7.1  
tr|B7JVS3|B7JVS3_SYNP8 Putative signal transduction protein with...    33   9.2  
tr|B4BVW0|B4BVW0_9CHRO Putative signal transduction protein with...    33   9.2  
tr|A9HKD8|A9HKD8_9RHOB Dehydrogenase, putative OS=Roseobacter li...    33   9.2  

>tr|Q07Q99|Q07Q99_RHOP5 Methyl-accepting chemotaxis sensory
           transducer OS=Rhodopseudomonas palustris (strain BisA53)
           GN=RPE_1941 PE=3 SV=1
          Length = 568

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 15/33 (45%), Positives = 23/33 (69%)
 Frame = -3

Query: 149 PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRL 51
           PP + ++ A  E+ L +HN S LPAH Q+L++L
Sbjct: 63  PPPEYVIEAFLEATLALHNPSNLPAHRQRLAKL 95


>tr|Q2GN21|Q2GN21_CHAGB Putative uncharacterized protein
           OS=Chaetomium globosum GN=CHGG_10633 PE=4 SV=1
          Length = 691

 Score = 33.9 bits (76), Expect = 4.2
 Identities = 18/42 (42%), Positives = 24/42 (57%)
 Frame = -3

Query: 128 SAPRESPLLMHNSSALPAHEQQLSRLQAINNDTQDALTHSNG 3
           SAP +SPL  H  +  P+    LS+  A +N + DA TH NG
Sbjct: 266 SAPLQSPLTQHQHAMKPS----LSQSSAPSNSSDDASTHDNG 303


>tr|Q4E5A5|Q4E5A5_TRYCR Putative uncharacterized protein
            OS=Trypanosoma cruzi GN=Tc00.1047053506559.250 PE=4 SV=1
          Length = 1559

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 21/50 (42%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
 Frame = -3

Query: 149  PPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINN-DTQDALTHSNG 3
            PPS S+ S PR SP L  +SS+ PA ++    LQAI+  D+ D      G
Sbjct: 1179 PPSSSLASPPRSSPSLFSSSSS-PATDKHRRVLQAISTVDSSDVAALEKG 1227


>tr|B3MXQ3|B3MXQ3_DROAN GF19397 OS=Drosophila ananassae GN=GF19397
           PE=4 SV=1
          Length = 264

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 18/63 (28%), Positives = 34/63 (53%)
 Frame = -3

Query: 212 RILRQNRFTKHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQLSRLQAINND 33
           R+L +   T   +  +   SS P+ ++  AP  +  L+H ++  P+H+QQ  + Q  NN+
Sbjct: 28  RLLSEEEETTITVTSSPPLSSSPAIAVSIAPPTTLPLVHTTTIQPSHQQQQQQQQNNNNN 87

Query: 32  TQD 24
           T +
Sbjct: 88  TNN 90


>tr|A0E1H7|A0E1H7_PARTE Chromosome undetermined scaffold_73, whole
           genome shotgun sequence OS=Paramecium tetraurelia
           GN=GSPATT00022313001 PE=4 SV=1
          Length = 220

 Score = 33.5 bits (75), Expect = 5.4
 Identities = 24/70 (34%), Positives = 34/70 (48%), Gaps = 3/70 (4%)
 Frame = -3

Query: 227 RHRDARILRQNRFTKHQIKENLQWSSPPSKSMLSAPRESPLLMHNSSALPAHEQQL---S 57
           R  +  I +Q     ++IK N + +S    S  S  RE P L +NS     H QQ+    
Sbjct: 35  RTPEKNIPKQKESPSYRIKSNPKINSQRQASSSSPSREKPQLKYNS----FHSQQIKQKK 90

Query: 56  RLQAINNDTQ 27
           RLQ + ND+Q
Sbjct: 91  RLQEMGNDSQ 100


>tr|Q6H593|Q6H593_ORYSJ Os09g0386200 protein OS=Oryza sativa subsp.
           japonica GN=OSJNBa0048A13.13 PE=4 SV=1
          Length = 547

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +2

Query: 101 SAMVILSELRAWTSKGVSSIEGFLLFDAL*TYSGEVFEHLCVEIADLMCFIP 256
           SA+V+++E  A  ++ V SI G L+ D +   SG+ +E  C++    + F+P
Sbjct: 35  SAVVVVAEEEAPPAEFVCSILGALMADPVILPSGQTYERACLQACAELAFLP 86


>tr|B8BF24|B8BF24_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_31222 PE=4 SV=1
          Length = 547

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 17/52 (32%), Positives = 31/52 (59%)
 Frame = +2

Query: 101 SAMVILSELRAWTSKGVSSIEGFLLFDAL*TYSGEVFEHLCVEIADLMCFIP 256
           SA+V+++E  A  ++ V SI G L+ D +   SG+ +E  C++    + F+P
Sbjct: 35  SAVVVVAEEEAPPAEFVCSILGALMADPVILPSGQTYERACLQACAELAFLP 86


>tr|A9RSV2|A9RSV2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_118902 PE=4 SV=1
          Length = 411

 Score = 33.1 bits (74), Expect = 7.1
 Identities = 21/50 (42%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
 Frame = -3

Query: 203 RQNRFTKHQIKENLQWSSPPSKSMLS-APRESPLLMHNSSALPAHEQQLS 57
           R N+F    I  +  +SSPPS S  + +P+ESP    +SSALP  +  LS
Sbjct: 11  RHNKFNNEGIDPS--FSSPPSSSSFTLSPQESPRPKSSSSALPPEQALLS 58


>tr|B7JVS3|B7JVS3_SYNP8 Putative signal transduction protein with
           Nacht domain OS=Synechococcus sp. (strain PCC 8801 /
           RF-1) GN=PCC8801_0553 PE=4 SV=1
          Length = 1235

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 77  LAKRKNCASAMVILSELRAWTSKGVSSIEGFLLFDAL*TYSGEVFEHL 220
           L++ K C+ A  I  +L  W  KGV    G  L   L T +GE   HL
Sbjct: 520 LSEFKTCSLAEEICQQLIKWEKKGVQGERGSTLESPLGTCAGETLNHL 567


>tr|B4BVW0|B4BVW0_9CHRO Putative signal transduction protein with
           Nacht domain OS=Cyanothece sp. PCC 8802
           GN=Cyan8802DRAFT_0927 PE=4 SV=1
          Length = 1235

 Score = 32.7 bits (73), Expect = 9.2
 Identities = 18/48 (37%), Positives = 23/48 (47%)
 Frame = +2

Query: 77  LAKRKNCASAMVILSELRAWTSKGVSSIEGFLLFDAL*TYSGEVFEHL 220
           L++ K C+ A  I  +L  W  KGV    G  L   L T +GE   HL
Sbjct: 520 LSEFKTCSLAEEICQQLIKWEKKGVQGERGSTLESPLGTCAGETLNHL 567