NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944086
Clone id YMU02A01NGRL0004_O23
Library
Length 431
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_O23. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTCTATTGGAGAGAATGTAAACCCCGCCACAGTCAAGTTCACTGGCAAGAACGCTTACGA
TTTGTGAGGAGCATGTTGCTGACCCCTTTATGATTCTTTCTGTAAGTGGTCTGTGGCAAG
CTCATGTCTTCTATCTTTCATGATTGTAAAGTTTTTCTGTAATAGACTACTTCTTCCTCC
GACGGTTCCAGTCTGAGAGCTTGTCATAAGTTGAGTTCATTCTATGGACTTGAACTGTCT
ATGTTTGTTATGGAAGGTACCTAGCTTTACTGTTTGACAGTTGAATTGGCATTTGTGTCA
TCAACTATCCTCGGTCTGCACAACATCTCTAGCTTGAACATCTTAATGTGCTATTGTTTT
TATTGATTATATCTTGATGTCTACGTTGGATCCTTGCTGGTNAAAAAAAAAAAAAAAAAA
AAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P36213
Definition sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, chloroplastic OS=Hordeum vulgare
Align length 21
Score (bit) 35.4
E-value 0.088
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944086|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O23, 5'
         (402 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II, c...    35   0.088
sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2...    35   0.088
sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1...    35   0.088
sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II, c...    35   0.12 
sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II, c...    35   0.15 
sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II OS...    33   0.44 
sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II OS...    33   0.44 
sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II OS...    33   0.44 
sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II OS...    33   0.57 
sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II OS...    33   0.57 
sp|P0A421|PSAD_SYNEN Photosystem I reaction center subunit II OS...    33   0.57 
sp|P51279|PSAD_PORPU Photosystem I reaction center subunit II OS...    33   0.57 
sp|P29302|PSAD_NICSY Photosystem I reaction center subunit II, c...    33   0.57 
sp|P23808|PSAD_FREDI Photosystem I reaction center subunit II OS...    32   1.3  
sp|Q7NF26|PSAD_GLOVI Photosystem I reaction center subunit II OS...    31   1.7  
sp|P59785|ALGA_PSEFL Alginate biosynthesis protein algA OS=Pseud...    31   2.2  
sp|Q1XDK7|PSAD_PORYE Photosystem I reaction center subunit II OS...    30   2.8  
sp|O78502|PSAD_GUITH Photosystem I reaction center subunit II OS...    30   4.9  
sp|O96800|PSAD_SKECO Photosystem I reaction center subunit II OS...    29   6.3  
sp|P49481|PSAD_ODOSI Photosystem I reaction center subunit II OS...    29   6.3  
sp|P12372|PSAD_SOLLC Photosystem I reaction center subunit II, c...    29   8.3  

>sp|P36213|PSAD_HORVU Photosystem I reaction center subunit II,
           chloroplastic OS=Hordeum vulgare GN=psaD PE=1 SV=1
          Length = 205

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 14/21 (66%), Positives = 19/21 (90%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NV+P  VKFTGKN++D+
Sbjct: 185 SIGKNVSPIEVKFTGKNSFDI 205


>sp|Q9SA56|PSAD2_ARATH Photosystem I reaction center subunit II-2,
           chloroplastic OS=Arabidopsis thaliana GN=psaD2 PE=1 SV=1
          Length = 204

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NV+P  VKFTGK +YDL
Sbjct: 184 SIGKNVSPIEVKFTGKQSYDL 204


>sp|Q9S7H1|PSAD1_ARATH Photosystem I reaction center subunit II-1,
           chloroplastic OS=Arabidopsis thaliana GN=psaD1 PE=1 SV=1
          Length = 208

 Score = 35.4 bits (80), Expect = 0.088
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NV+P  VKFTGK +YDL
Sbjct: 188 SIGKNVSPIEVKFTGKQSYDL 208


>sp|P32869|PSAD_CUCSA Photosystem I reaction center subunit II,
           chloroplastic OS=Cucumis sativus GN=psaD PE=1 SV=1
          Length = 207

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NV+P  VKFTGK  YDL
Sbjct: 187 SIGKNVSPIEVKFTGKQVYDL 207


>sp|P12353|PSAD_SPIOL Photosystem I reaction center subunit II,
           chloroplastic OS=Spinacia oleracea GN=psaD PE=1 SV=2
          Length = 212

 Score = 34.7 bits (78), Expect = 0.15
 Identities = 15/21 (71%), Positives = 17/21 (80%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NV+P  VKFTGK  YDL
Sbjct: 192 SIGKNVSPIEVKFTGKQPYDL 212


>sp|P23076|PSAD_SYNP6 Photosystem I reaction center subunit II
           OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
           SAUG 1402/1) GN=psaD PE=1 SV=3
          Length = 142

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 13/18 (72%), Positives = 15/18 (83%)
 Frame = +2

Query: 5   IGENVNPATVKFTGKNAY 58
           IG+N NPAT+KFTGK  Y
Sbjct: 123 IGQNPNPATIKFTGKQPY 140


>sp|P31089|PSAD_ANAVT Photosystem I reaction center subunit II
           OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
           GN=psaD PE=1 SV=3
          Length = 139

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYD 61
           SIGEN NP+ VKF+GK  YD
Sbjct: 119 SIGENPNPSQVKFSGKATYD 138


>sp|P58573|PSAD_ANASP Photosystem I reaction center subunit II
           OS=Anabaena sp. (strain PCC 7120) GN=psaD PE=3 SV=1
          Length = 139

 Score = 33.1 bits (74), Expect = 0.44
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYD 61
           SIGEN NP+ VKF+GK  YD
Sbjct: 119 SIGENPNPSQVKFSGKATYD 138


>sp|P0A422|PSAD_THEVL Photosystem I reaction center subunit II
           OS=Thermosynechococcus vulcanus GN=psaD PE=1 SV=2
          Length = 139

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYD 61
           SIG+N NP+ +KFTGK  YD
Sbjct: 119 SIGQNPNPSQLKFTGKKPYD 138


>sp|P0A420|PSAD_THEEB Photosystem I reaction center subunit II
           OS=Thermosynechococcus elongatus (strain BP-1) GN=psaD
           PE=1 SV=2
          Length = 139

 Score = 32.7 bits (73), Expect = 0.57
 Identities = 13/20 (65%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYD 61
           SIG+N NP+ +KFTGK  YD
Sbjct: 119 SIGQNPNPSQLKFTGKKPYD 138
tr_hit_id A5AEB4
Definition tr|A5AEB4|A5AEB4_VITVI Putative uncharacterized protein (Chromosome chr5 scaffold_2, whole genome shotgun sequence) OS=Vitis vinifera
Align length 21
Score (bit) 38.5
E-value 0.17
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944086|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_O23, 5'
         (402 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5AEB4|A5AEB4_VITVI Putative uncharacterized protein (Chromos...    39   0.17 
tr|A9PGC7|A9PGC7_POPTR Putative uncharacterized protein OS=Popul...    37   0.63 
tr|A9NMK6|A9NMK6_PICSI Putative uncharacterized protein OS=Picea...    37   0.63 
tr|A9NL03|A9NL03_PICSI Putative uncharacterized protein OS=Picea...    37   0.63 
tr|A7PUB0|A7PUB0_VITVI Chromosome chr7 scaffold_31, whole genome...    37   0.63 
tr|B0C8F1|B0C8F1_ACAM1 Photosystem I protein PsaD OS=Acaryochlor...    35   1.4  
tr|Q0VJA0|Q0VJA0_PLAAC Photosystem I reaction center subunit II ...    35   1.4  
tr|Q7V9U1|Q7V9U1_PROMA Photosystem I reaction center subunit II ...    35   1.8  
tr|Q7U4M3|Q7U4M3_SYNPX Photosystem I reaction center subunit II ...    35   1.8  
tr|Q84PB4|Q84PB4_ORYSJ Os08g0560900 protein OS=Oryza sativa subs...    35   1.8  
tr|A9PJR8|A9PJR8_POPJC Putative uncharacterized protein OS=Popul...    35   1.8  
tr|A9PIP5|A9PIP5_POPJC Putative uncharacterized protein OS=Popul...    35   1.8  
tr|A8C1B5|A8C1B5_CITSI PSI reaction center subunit II OS=Citrus ...    35   1.8  
tr|A8C183|A8C183_CITSI PSI reaction center subunit II OS=Citrus ...    35   1.8  
tr|A8C172|A8C172_CITSI PSI reaction center subunit II OS=Citrus ...    35   1.8  
tr|A2YY54|A2YY54_ORYSI Putative uncharacterized protein OS=Oryza...    35   1.8  
tr|Q3AWA4|Q3AWA4_SYNS9 Photosystem I reaction center subunit II ...    35   2.4  
tr|Q05ZD2|Q05ZD2_9SYNE Photosystem I reaction center subunit II ...    35   2.4  
tr|Q4G369|Q4G369_EMIHU Photosystem I subunit II OS=Emiliania hux...    35   2.4  
tr|A5Z2K3|A5Z2K3_SOYBN Photosystem I subunit PsaD OS=Glycine max...    35   2.4  
tr|Q7V564|Q7V564_PROMM Photosystem I protein PsaD OS=Prochloroco...    34   3.1  
tr|Q3AMK7|Q3AMK7_SYNSC Photosystem I reaction center subunit II ...    34   3.1  
tr|A2CBZ6|A2CBZ6_PROM3 Photosystem I protein PsaD OS=Prochloroco...    34   3.1  
tr|Q9M713|Q9M713_MAIZE Ferredoxin-binding subunit OS=Zea mays GN...    34   3.1  
tr|B6SKI1|B6SKI1_MAIZE Photosystem I reaction center subunit II ...    34   3.1  
tr|B4FX51|B4FX51_MAIZE Putative uncharacterized protein OS=Zea m...    34   3.1  
tr|Q05Q88|Q05Q88_9SYNE Photosystem I reaction center subunit II ...    34   4.1  
tr|B5IPN0|B5IPN0_9CHRO Photosystem I reaction center subunit II ...    34   4.1  
tr|A4CSJ1|A4CSJ1_SYNPV Photosystem I reaction center subunit II ...    34   4.1  
tr|A8C1A1|A8C1A1_CITSI PSI reaction center subunit II OS=Citrus ...    34   4.1  

>tr|A5AEB4|A5AEB4_VITVI Putative uncharacterized protein (Chromosome
           chr5 scaffold_2, whole genome shotgun sequence) OS=Vitis
           vinifera GN=GSVIVT00019961001 PE=4 SV=1
          Length = 204

 Score = 38.5 bits (88), Expect = 0.17
 Identities = 17/21 (80%), Positives = 18/21 (85%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NVNP  VKFTGK AYDL
Sbjct: 184 SIGKNVNPIEVKFTGKQAYDL 204


>tr|A9PGC7|A9PGC7_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 201

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NV+P  VKFTGK AYDL
Sbjct: 181 SIGKNVSPIEVKFTGKQAYDL 201


>tr|A9NMK6|A9NMK6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 234

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NVNP+ VKFTGK  YD+
Sbjct: 214 SIGKNVNPSQVKFTGKQTYDV 234


>tr|A9NL03|A9NL03_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 234

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 15/21 (71%), Positives = 18/21 (85%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NVNP+ VKFTGK  YD+
Sbjct: 214 SIGKNVNPSQVKFTGKQTYDV 234


>tr|A7PUB0|A7PUB0_VITVI Chromosome chr7 scaffold_31, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00023726001
           PE=4 SV=1
          Length = 204

 Score = 36.6 bits (83), Expect = 0.63
 Identities = 16/21 (76%), Positives = 18/21 (85%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NV+P  VKFTGK AYDL
Sbjct: 184 SIGKNVSPIEVKFTGKQAYDL 204


>tr|B0C8F1|B0C8F1_ACAM1 Photosystem I protein PsaD OS=Acaryochloris
           marina (strain MBIC 11017) GN=psaD PE=4 SV=1
          Length = 139

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 14/20 (70%), Positives = 16/20 (80%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYD 61
           SIGEN NP  +K+TGK AYD
Sbjct: 120 SIGENPNPGAIKYTGKKAYD 139


>tr|Q0VJA0|Q0VJA0_PLAAC Photosystem I reaction center subunit II
           (Fragment) OS=Platanus acerifolia GN=psad PE=2 SV=1
          Length = 122

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 15/21 (71%), Positives = 16/21 (76%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+N NP  VKFTGK  YDL
Sbjct: 102 SIGKNANPIEVKFTGKQVYDL 122


>tr|Q7V9U1|Q7V9U1_PROMA Photosystem I reaction center subunit II
           PsaD OS=Prochlorococcus marinus GN=psaD PE=4 SV=1
          Length = 141

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 13/19 (68%), Positives = 17/19 (89%)
 Frame = +2

Query: 5   IGENVNPATVKFTGKNAYD 61
           IG+N NPA++KFTGKN +D
Sbjct: 122 IGQNPNPASIKFTGKNTFD 140


>tr|Q7U4M3|Q7U4M3_SYNPX Photosystem I reaction center subunit II
           (PsaD) OS=Synechococcus sp. (strain WH8102) GN=psaD PE=4
           SV=1
          Length = 143

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 12/19 (63%), Positives = 18/19 (94%)
 Frame = +2

Query: 5   IGENVNPATVKFTGKNAYD 61
           IG+NVNP+++KF+G+N YD
Sbjct: 124 IGQNVNPSSIKFSGRNTYD 142


>tr|Q84PB4|Q84PB4_ORYSJ Os08g0560900 protein OS=Oryza sativa subsp.
           japonica GN=Os08g0560900 PE=2 SV=1
          Length = 203

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 14/21 (66%), Positives = 18/21 (85%)
 Frame = +2

Query: 2   SIGENVNPATVKFTGKNAYDL 64
           SIG+NV+P  VKFTGKN +D+
Sbjct: 183 SIGKNVSPIEVKFTGKNVFDI 203