DK944093
Clone id YMU02A01NGRL0004_P06
Library
Length 389
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_P06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
GTCTTCCCTAATGTGGACCAAGCTTTTGTGGCAGCTCTTGTGATCATCATGGACCGTATC
CATGAGGACTAGATGGCTTTGACAGCCCCGCATGAGCAAGCCCGCCCTTCGTCTTCATCC
TGTCCTGCCACCATCTACCTAAGGATGTCCCCTTGTTTTTGCATAAGCATTCCTTCACCG
CCATATCCATCTTTCTGTTTGTGGTTTCCATTGCAAGTAGCTTAGTTTGTAAGTTTGACC
CCTAGTCAAGGTAACTGGTTTTTGTTACATCATTTTGCTTTGCTTTTCTTGAAGCTGCCT
TTTTGGTGGTCCTCCAATGCAATGCTCTTATATCCCGAATGTGGAGTGTAAATTGCACGA
TTAAATATGGAAACTTCCATTTCAGTACT
■■Homology search results ■■ -
sp_hit_id Q9LZX1
Definition sp|Q9LZX1|Y5175_ARATH UPF0706 protein At5g01750 OS=Arabidopsis thaliana
Align length 23
Score (bit) 33.1
E-value 0.45
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944093|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_P06, 5'
(389 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|Q9LZX1|Y5175_ARATH UPF0706 protein At5g01750 OS=Arabidopsis t... 33 0.45
sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Hom... 29 8.4

>sp|Q9LZX1|Y5175_ARATH UPF0706 protein At5g01750 OS=Arabidopsis
thaliana GN=At5g01750 PE=1 SV=1
Length = 217

Score = 33.1 bits (74), Expect = 0.45
Identities = 12/23 (52%), Positives = 20/23 (86%)
Frame = +1

Query: 1 VFPNVDQAFVAALVIIMDRIHED 69
V+PNVD AF+A+LV+I+D ++ +
Sbjct: 191 VYPNVDYAFIASLVVILDDVNRE 213


>sp|Q9ULT0|TTC7A_HUMAN Tetratricopeptide repeat protein 7A OS=Homo
sapiens GN=TTC7A PE=1 SV=3
Length = 858

Score = 28.9 bits (63), Expect = 8.4
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = -1

Query: 197 QKDGYGGEGMLMQKQGDILR*MVAGQDEDEG--RACSCGAVK---AI*SSWIRSMMITRA 33
+KDG GEG+ M+KQ + + D D G RA S A + A+ + S ++ +
Sbjct: 643 EKDGSFGEGLTMKKQSGMHLTLPDAHDADSGSRRASSIAASRLEEAMSELTMPSSVLKQG 702

Query: 32 ATKAWSTL 9
+ W+TL
Sbjct: 703 PMQLWTTL 710


tr_hit_id B6T7N7
Definition tr|B6T7N7|B6T7N7_MAIZE Putative uncharacterized protein OS=Zea mays
Align length 23
Score (bit) 36.2
E-value 0.84
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944093|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_P06, 5'
(389 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|B6T7N7|B6T7N7_MAIZE Putative uncharacterized protein OS=Zea m... 36 0.84
tr|B6SU53|B6SU53_MAIZE Putative uncharacterized protein OS=Zea m... 36 0.84
tr|A7QFJ2|A7QFJ2_VITVI Chromosome chr8 scaffold_88, whole genome... 36 1.1
tr|Q84YM9|Q84YM9_ORYSJ Os07g0230700 protein OS=Oryza sativa subs... 34 3.2
tr|A3BI01|A3BI01_ORYSJ Putative uncharacterized protein OS=Oryza... 34 3.2
tr|A2YJM7|A2YJM7_ORYSI Putative uncharacterized protein OS=Oryza... 34 3.2

>tr|B6T7N7|B6T7N7_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 210

Score = 36.2 bits (82), Expect = 0.84
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1

Query: 1 VFPNVDQAFVAALVIIMDRIHED 69
VFP+VD FVAALV+I+D IH +
Sbjct: 185 VFPHVDYVFVAALVVILDEIHRE 207


>tr|B6SU53|B6SU53_MAIZE Putative uncharacterized protein OS=Zea mays
PE=2 SV=1
Length = 207

Score = 36.2 bits (82), Expect = 0.84
Identities = 15/23 (65%), Positives = 19/23 (82%)
Frame = +1

Query: 1 VFPNVDQAFVAALVIIMDRIHED 69
VFP+VD FVAALV+I+D IH +
Sbjct: 182 VFPHVDYVFVAALVVILDEIHRE 204


>tr|A7QFJ2|A7QFJ2_VITVI Chromosome chr8 scaffold_88, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00037442001
PE=4 SV=1
Length = 216

Score = 35.8 bits (81), Expect = 1.1
Identities = 13/23 (56%), Positives = 20/23 (86%)
Frame = +1

Query: 1 VFPNVDQAFVAALVIIMDRIHED 69
V+PNVD AF+ AL++I+D I++D
Sbjct: 191 VYPNVDYAFIVALIVILDEINDD 213


>tr|Q84YM9|Q84YM9_ORYSJ Os07g0230700 protein OS=Oryza sativa subsp.
japonica GN=OSJNBa0086N05.106 PE=2 SV=1
Length = 214

Score = 34.3 bits (77), Expect = 3.2
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1

Query: 1 VFPNVDQAFVAALVIIMDRIHED 69
VFP VD F+AALV I+D +H D
Sbjct: 189 VFPQVDYVFIAALVAILDDVHRD 211


>tr|A3BI01|A3BI01_ORYSJ Putative uncharacterized protein OS=Oryza
sativa subsp. japonica GN=OsJ_022673 PE=4 SV=1
Length = 201

Score = 34.3 bits (77), Expect = 3.2
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1

Query: 1 VFPNVDQAFVAALVIIMDRIHED 69
VFP VD F+AALV I+D +H D
Sbjct: 176 VFPQVDYVFIAALVAILDDVHRD 198


>tr|A2YJM7|A2YJM7_ORYSI Putative uncharacterized protein OS=Oryza
sativa subsp. indica GN=OsI_25434 PE=4 SV=1
Length = 201

Score = 34.3 bits (77), Expect = 3.2
Identities = 14/23 (60%), Positives = 17/23 (73%)
Frame = +1

Query: 1 VFPNVDQAFVAALVIIMDRIHED 69
VFP VD F+AALV I+D +H D
Sbjct: 176 VFPQVDYVFIAALVAILDDVHRD 198