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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944098
Clone id YMU02A01NGRL0004_P11
Library
Length 397
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_P11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AAGCTGCACTTGGAGAGGCGAACGAAGATTCTATTAAGCAGGGCACGTTCTAGTAGATTT
GGTTGAAGAGCAACCATCCGTGGGTGTCCATCACCACGATGTGTTGCACCACTATGCTAC
ACCAGGACGAATAGAGAGGGGCTTGTTGCATGAAGGGGATCAGAGTGAGAGCATGAGAGT
GTATGCGCCAAGAACAGATGGTGGATGATAGATGGTCTGTTTACGAAACATGTAGGAGAA
CCTCATGCCGGACCTCGCCCCCATGGAATTTGTTGCGAGGCATGGGCAAGCTTCTTTGGT
TTCTATTATCCTGTTTGTATTTCATTTCTCTGTCAGATTGAAATTTATGTGACAAAGCGA
TTGCTACGTGAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id A1WNY2
Definition sp|A1WNY2|ATE_VEREI Putative arginyl-tRNA--protein transferase OS=Verminephrobacter eiseniae (strain EF01-2)
Align length 84
Score (bit) 30.4
E-value 2.9
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944098|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_P11, 5'
         (370 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A1WNY2|ATE_VEREI Putative arginyl-tRNA--protein transferase O...    30   2.9  
sp|P34054|INDA1_TRIAT Amino-acid permease inda1 OS=Trichoderma a...    30   3.7  
sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase...    30   3.7  
sp|P16730|UL87_HCMVA Protein UL87 OS=Human cytomegalovirus (stra...    29   6.4  
sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase...    29   6.4  
sp|Q80W49|CRBG3_MOUSE Beta/gamma crystallin domain-containing pr...    29   8.3  
sp|Q66C31|ASSY_YERPS Argininosuccinate synthase OS=Yersinia pseu...    29   8.3  
sp|A4TKI3|ASSY_YERPP Argininosuccinate synthase OS=Yersinia pest...    29   8.3  
sp|Q1CGZ2|ASSY_YERPN Argininosuccinate synthase OS=Yersinia pest...    29   8.3  
sp|Q8ZFV7|ASSY_YERPE Argininosuccinate synthase OS=Yersinia pest...    29   8.3  
sp|A7FJE9|ASSY_YERP3 Argininosuccinate synthase OS=Yersinia pseu...    29   8.3  
sp|A1JTL6|ASSY_YERE8 Argininosuccinate synthase OS=Yersinia ente...    29   8.3  
sp|Q9ZT00|RCA_MAIZE Ribulose bisphosphate carboxylase/oxygenase ...    29   8.3  

>sp|A1WNY2|ATE_VEREI Putative arginyl-tRNA--protein transferase
           OS=Verminephrobacter eiseniae (strain EF01-2) GN=ate
           PE=3 SV=1
          Length = 251

 Score = 30.4 bits (67), Expect = 2.9
 Identities = 23/84 (27%), Positives = 38/84 (45%), Gaps = 7/84 (8%)
 Frame = +2

Query: 116 ATPGRIERG-----LLHEGDQSESMRVYAPRTDGG**MVCLRNM*ENLMPDLAPMEFVAR 280
           ATPG + +      L+ +G +   M  Y P  DG      LR + +   PD +    VAR
Sbjct: 35  ATPGHLIQSDIYSDLVTKGFRRSGMFTYRPYCDGCQACTPLRIVVDGFRPDRSQKRAVAR 94

Query: 281 HG--QASLVSIILFVFHFSVRLKF 346
           HG  Q  ++ +     H+ + L++
Sbjct: 95  HGKLQTRVLRLCFVPEHYQLYLRY 118


>sp|P34054|INDA1_TRIAT Amino-acid permease inda1 OS=Trichoderma
           atroviride GN=inda1 PE=2 SV=1
          Length = 573

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = -1

Query: 193 SWRIHSHALTLIPFMQQAPLYSSWCSIVVQHIVVM 89
           +W+ H H L  IPF     +Y S+  + +  IV+M
Sbjct: 451 AWKYHGHTLDEIPFKAAGGVYGSYLGLFICVIVLM 485


>sp|Q7X999|RCA2_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 2, chloroplastic OS=Larrea tridentata GN=RCA2
           PE=2 SV=1
          Length = 435

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 12/16 (75%), Positives = 16/16 (100%)
 Frame = +3

Query: 3   AALGEANEDSIKQGTF 50
           AALG+AN+D+IK+GTF
Sbjct: 420 AALGDANQDAIKRGTF 435


>sp|P16730|UL87_HCMVA Protein UL87 OS=Human cytomegalovirus (strain
           AD169) GN=UL87 PE=3 SV=1
          Length = 941

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/52 (28%), Positives = 24/52 (46%), Gaps = 5/52 (9%)
 Frame = -2

Query: 321 NTNRIIETKEACPCLATNSMGARS-----GMRFSYMFRKQTIYHPPSVLGAY 181
           NTNR+I  K A   +A + +G R+      M  S++  K T   P   +  +
Sbjct: 562 NTNRVINMKAALSSIAASGLGVRAPRLPKNMTHSFVMYKHTFKEPACTVSTF 613


>sp|Q7X9A0|RCA1_LARTR Ribulose bisphosphate carboxylase/oxygenase
           activase 1, chloroplastic OS=Larrea tridentata GN=RCA1
           PE=2 SV=1
          Length = 476

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 12/16 (75%), Positives = 15/16 (93%)
 Frame = +3

Query: 3   AALGEANEDSIKQGTF 50
           AALG+AN D+IK+GTF
Sbjct: 420 AALGDANNDAIKRGTF 435


>sp|Q80W49|CRBG3_MOUSE Beta/gamma crystallin domain-containing
           protein 3 OS=Mus musculus GN=Crybg3 PE=2 SV=2
          Length = 1005

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 14/57 (24%), Positives = 27/57 (47%)
 Frame = -1

Query: 190 WRIHSHALTLIPFMQQAPLYSSWCSIVVQHIVVMDTHGWLLFNQIY*NVPCLIESSF 20
           +R+  HA  L P+++     +  C+     +++ D HG     ++Y N+P     SF
Sbjct: 300 FRVQDHAGRLSPYVENVDKQTLKCNPRPGKMIIYDLHGSKYKQEVYCNIPDATTWSF 356


>sp|Q66C31|ASSY_YERPS Argininosuccinate synthase OS=Yersinia
           pseudotuberculosis GN=argG PE=3 SV=1
          Length = 455

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 41  GHVLVDLVEEQPSVGVHHHDVLHHYATPGRIERGLLHEG 157
           G  L+ +  E+   G+H+ D +  Y   GR+   LL++G
Sbjct: 296 GMALLHIAYERLLTGIHNEDTIEQYHANGRVLGRLLYQG 334


>sp|A4TKI3|ASSY_YERPP Argininosuccinate synthase OS=Yersinia pestis
           (strain Pestoides F) GN=argG PE=3 SV=1
          Length = 455

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 41  GHVLVDLVEEQPSVGVHHHDVLHHYATPGRIERGLLHEG 157
           G  L+ +  E+   G+H+ D +  Y   GR+   LL++G
Sbjct: 296 GMALLHIAYERLLTGIHNEDTIEQYHANGRVLGRLLYQG 334


>sp|Q1CGZ2|ASSY_YERPN Argininosuccinate synthase OS=Yersinia pestis
           bv. Antiqua (strain Nepal516) GN=argG PE=3 SV=1
          Length = 455

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 41  GHVLVDLVEEQPSVGVHHHDVLHHYATPGRIERGLLHEG 157
           G  L+ +  E+   G+H+ D +  Y   GR+   LL++G
Sbjct: 296 GMALLHIAYERLLTGIHNEDTIEQYHANGRVLGRLLYQG 334


>sp|Q8ZFV7|ASSY_YERPE Argininosuccinate synthase OS=Yersinia pestis
           GN=argG PE=3 SV=3
          Length = 455

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 12/39 (30%), Positives = 21/39 (53%)
 Frame = +2

Query: 41  GHVLVDLVEEQPSVGVHHHDVLHHYATPGRIERGLLHEG 157
           G  L+ +  E+   G+H+ D +  Y   GR+   LL++G
Sbjct: 296 GMALLHIAYERLLTGIHNEDTIEQYHANGRVLGRLLYQG 334
tr_hit_id Q3XXF1
Definition tr|Q3XXF1|Q3XXF1_ENTFC Metallophosphoesterase OS=Enterococcus faecium DO
Align length 55
Score (bit) 34.7
E-value 2.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944098|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_P11, 5'
         (370 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q3XXF1|Q3XXF1_ENTFC Metallophosphoesterase OS=Enterococcus fa...    35   2.4  
tr|B4QBR9|B4QBR9_DROSI GD11321 OS=Drosophila simulans GN=GD11321...    34   4.1  

>tr|Q3XXF1|Q3XXF1_ENTFC Metallophosphoesterase OS=Enterococcus
           faecium DO GN=EfaeDRAFT_0355 PE=4 SV=1
          Length = 243

 Score = 34.7 bits (78), Expect = 2.4
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -1

Query: 265 HGGEVRHEVLLHVS*TDHLSSTICSWRIHSHALTLIPFMQQAPLYSSWCSIVVQH 101
           +GG+   E L+H   ++  S T  S  I S    LI F+ Q PLY  W + +  H
Sbjct: 89  NGGKETFESLIHPGASEEYSPTEISMMIQSRYSELIKFLVQRPLYYEWENYLFVH 143


>tr|B4QBR9|B4QBR9_DROSI GD11321 OS=Drosophila simulans GN=GD11321
           PE=4 SV=1
          Length = 274

 Score = 33.9 bits (76), Expect = 4.1
 Identities = 15/30 (50%), Positives = 17/30 (56%)
 Frame = +2

Query: 38  AGHVLVDLVEEQPSVGVHHHDVLHHYATPG 127
           AGHV     E  P    HHH +LHHY +PG
Sbjct: 32  AGHV-----ESDPQQQQHHHQLLHHYYSPG 56