DK944099 |
Clone id |
YMU02A01NGRL0004_P12 |
Library |
YMU02 |
Length |
284 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_P12. 5' end sequence. |
Accession |
DK944099 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL66Contig1 |
Sequence |
CGATCCTATCTCATTGCTATCAAGGATTCCAAGAAGCCTGCAGAGAAAGAGATCATCATC GATGTTCCTCTGGCCTCCCGTCTTGCATGGCGTGGTTTTATCTGGCCTCTTGCGGCCATC TCAGAGCTGAGAAATGGCAAGCTTATTGAGGATGCGGCCAACATCACTGTCTCCCCTCGA TGAATGGTGGCCTTGCCTTGTGTATTTTGAGTATTGCCGGGCCTTAAGCCTCTGTTGAAT CTTGTTTTCACAAAAGAAATGGAGACCAACACAAAGAACCATGT |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P12356 |
Definition |
sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii |
Align length |
60 |
Score (bit) |
83.6 |
E-value |
3.0e-16 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944099|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_P12, 5' (284 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, ... 84 3e-16 sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III, ... 75 1e-13 sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III, ... 73 4e-13 sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III, ... 72 7e-13 sp|P31083|PSAF_SYNP6 Photosystem I reaction center subunit III O... 70 2e-12 sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III, ... 70 4e-12 sp|Q6B948|PSAF_GRATL Photosystem I reaction center subunit III O... 69 9e-12 sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III O... 67 2e-11 sp|P0A402|PSAF_SYNEN Photosystem I reaction center subunit III O... 67 2e-11 sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III O... 67 4e-11 sp|P51193|PSAF_PORPU Photosystem I reaction center subunit III O... 66 5e-11 sp|P29256|PSAF_SYNY3 Photosystem I reaction center subunit III O... 65 1e-10 sp|P48115|PSAF_CYAPA Photosystem I reaction center subunit III O... 64 2e-10 sp|O78457|PSAF_GUITH Photosystem I reaction center subunit III O... 60 4e-09 sp|P49483|PSAF_ODOSI Photosystem I reaction center subunit III O... 57 3e-08 sp|Q9TLW6|PSAF_CYACA Photosystem I reaction center subunit III O... 56 5e-08 sp|P31091|PSAF_ANAVT Photosystem I reaction center subunit III O... 54 3e-07 sp|P58564|PSAF_ANASP Photosystem I reaction center subunit III O... 53 5e-07 sp|Q9X7I4|PSAF_PROMA Photosystem I reaction center subunit III O... 48 1e-05 sp|O31127|PSAF_MASLA Photosystem I reaction center subunit III O... 48 1e-05 sp|Q7NH05|PSAF_GLOVI Photosystem I reaction center subunit III O... 47 4e-05 sp|A6LEJ0|RL4_PARD8 50S ribosomal protein L4 OS=Parabacteroides ... 32 1.3 sp|A6KYJ4|RL4_BACV8 50S ribosomal protein L4 OS=Bacteroides vulg... 31 2.2 sp|Q8A477|RL4_BACTN 50S ribosomal protein L4 OS=Bacteroides thet... 31 2.2 sp|Q7MTL4|RL4_PORGI 50S ribosomal protein L4 OS=Porphyromonas gi... 30 2.8 sp|Q64NK9|RL4_BACFR 50S ribosomal protein L4 OS=Bacteroides frag... 30 2.8 sp|Q5L8B0|RL4_BACFN 50S ribosomal protein L4 OS=Bacteroides frag... 30 2.8 sp|Q18034|NFX1_CAEEL Transcriptional repressor NF-X1 homolog OS=... 30 3.7 sp|Q9KTB6|HEMH_VIBCH Ferrochelatase OS=Vibrio cholerae GN=hemH P... 29 8.3 sp|Q7VVX8|HEMH_BORPE Ferrochelatase OS=Bordetella pertussis GN=h... 29 8.3
>sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1 SV=1 Length = 227
Score = 83.6 bits (205), Expect = 3e-16 Identities = 39/60 (65%), Positives = 47/60 (78%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 R YLIA+K KP +KEIIIDVPLA++LAW+G WPLAA+ EL+ G L+E NITVSPR Sbjct: 168 RQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKEENITVSPR 227
>sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III, chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1 Length = 231
Score = 75.1 bits (183), Expect = 1e-13 Identities = 35/51 (68%), Positives = 43/51 (84%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIED 153 RSYLIAI+D KKP +KEIIIDVPLAS L +RGF WP+AA EL NG+L+++ Sbjct: 179 RSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELVDN 229
>sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III, chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1 Length = 232
Score = 73.2 bits (178), Expect = 4e-13 Identities = 34/50 (68%), Positives = 42/50 (84%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIE 150 RSYLIAI+D KKP +KEIIIDVPLA++L +RGF WP+AA E NG+LI+ Sbjct: 180 RSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELID 229
>sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III, chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1 Length = 221
Score = 72.4 bits (176), Expect = 7e-13 Identities = 36/49 (73%), Positives = 39/49 (79%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLI 147 RSYLIAI KKPA KEIIIDVPLASR+ +RGFIWP+AA E NG LI Sbjct: 169 RSYLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLI 217
>sp|P31083|PSAF_SYNP6 Photosystem I reaction center subunit III OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 / SAUG 1402/1) GN=psaF PE=1 SV=2 Length = 159
Score = 70.5 bits (171), Expect = 2e-12 Identities = 36/60 (60%), Positives = 41/60 (68%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 RSYL AIK K A KEI+IDVPLA + + GF WPLAA E +GKL+ A ITVSPR Sbjct: 100 RSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAKADEITVSPR 159
>sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III, chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2 Length = 235
Score = 69.7 bits (169), Expect = 4e-12 Identities = 35/55 (63%), Positives = 42/55 (76%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANI 165 RSYLIA+ KKPA +EIIIDV LA+R+ RGFIWP+AA EL NG L+ D A+I Sbjct: 179 RSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 233
>sp|Q6B948|PSAF_GRATL Photosystem I reaction center subunit III OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1 Length = 187
Score = 68.6 bits (166), Expect = 9e-12 Identities = 33/60 (55%), Positives = 41/60 (68%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 R YL I + KP EKEII+DVPLA + GF WPLAAI EL +G+L+ D +I +SPR Sbjct: 128 RGYLRDISQTTKPTEKEIILDVPLALKYCLSGFTWPLAAIKELTSGELVADNKDIPISPR 187
>sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III OS=Thermosynechococcus elongatus (strain BP-1) GN=psaF PE=1 SV=1 Length = 164
Score = 67.4 bits (163), Expect = 2e-11 Identities = 34/60 (56%), Positives = 43/60 (71%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 R+YLIA+++S + EKEIIIDVPLA + GF WPLAA+ EL +G+L ITVSPR Sbjct: 105 RAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEITVSPR 164
>sp|P0A402|PSAF_SYNEN Photosystem I reaction center subunit III OS=Synechococcus elongatus naegeli GN=psaF PE=1 SV=1 Length = 164
Score = 67.4 bits (163), Expect = 2e-11 Identities = 34/60 (56%), Positives = 43/60 (71%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 R+YLIA+++S + EKEIIIDVPLA + GF WPLAA+ EL +G+L ITVSPR Sbjct: 105 RAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEITVSPR 164
>sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III OS=Porphyra yezoensis GN=psaF PE=3 SV=1 Length = 181
Score = 66.6 bits (161), Expect = 4e-11 Identities = 32/60 (53%), Positives = 41/60 (68%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 R YL+++ + KP EKEII+DVPLA + GF WPLAA E +G+LI +ITVSPR Sbjct: 122 RGYLLSVAKTSKPTEKEIILDVPLAIKFMSSGFAWPLAAWQEFSSGQLIASNDDITVSPR 181
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9NWN3 |
Definition |
tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea sitchensis |
Align length |
60 |
Score (bit) |
90.9 |
E-value |
3.0e-17 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944099|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0004_P12, 5' (284 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea... 91 3e-17 tr|A9NR55|A9NR55_PICSI Putative uncharacterized protein OS=Picea... 91 3e-17 tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella paten... 89 8e-17 tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella paten... 88 2e-16 tr|Q1WLU7|Q1WLU7_CHLIN Chloroplast photosystem I subunit F (Frag... 84 4e-15 tr|A8J4S1|A8J4S1_CHLRE Photosystem I reaction center subunit III... 84 5e-15 tr|A9RNK7|A9RNK7_PHYPA Predicted protein (Fragment) OS=Physcomit... 77 6e-13 tr|A7QCS6|A7QCS6_VITVI Chromosome undetermined scaffold_79, whol... 77 6e-13 tr|A5B2H3|A5B2H3_VITVI Putative uncharacterized protein OS=Vitis... 77 6e-13 tr|Q9TI78|Q9TI78_LACSA Photosystem I subunit III (Fragment) OS=L... 76 7e-13 tr|A9SUQ3|A9SUQ3_PHYPA Predicted protein (Fragment) OS=Physcomit... 75 1e-12 tr|Q84QE7|Q84QE7_TOBAC Putative photosystem I subunit III OS=Nic... 75 2e-12 tr|Q9XQB4|Q9XQB4_PHAAU Photosystem I reaction center subunit III... 74 4e-12 tr|B7FF89|B7FF89_MEDTR Putative uncharacterized protein (Fragmen... 74 4e-12 tr|Q31NT9|Q31NT9_SYNE7 Photosystem I reaction center subunit III... 70 4e-11 tr|B0JUV3|B0JUV3_MICAN Photosystem I subunit III OS=Microcystis ... 69 1e-10 tr|A8YE22|A8YE22_MICAE PsaF protein OS=Microcystis aeruginosa PC... 69 1e-10 tr|Q2EHP8|Q2EHP8_POPCA Putative chloroplast photosystem I subuni... 69 1e-10 tr|B6SRI3|B6SRI3_MAIZE Photosystem I reaction center subunit III... 69 1e-10 tr|A9PI20|A9PI20_POPTR Putative uncharacterized protein OS=Popul... 69 1e-10 tr|B4VLW3|B4VLW3_9CYAN Photosystem I reaction center subunit III... 68 2e-10 tr|Q9SLW9|Q9SLW9_TOBAC mRNA, 327 bp sequence (Fragment) OS=Nicot... 67 3e-10 tr|Q9ZSU5|Q9ZSU5_ORYSA Photosystem-1 F subunit OS=Oryza sativa G... 67 6e-10 tr|Q8S7H8|Q8S7H8_ORYSJ cDNA clone:001-016-D02, full insert seque... 67 6e-10 tr|Q0DN30|Q0DN30_ORYSJ Os03g0778100 protein (Fragment) OS=Oryza ... 67 6e-10 tr|A2XMI1|A2XMI1_ORYSI Putative uncharacterized protein OS=Oryza... 67 6e-10 tr|Q4CB19|Q4CB19_CROWT Photosystem I reaction center protein Psa... 65 1e-09 tr|B4WS90|B4WS90_9SYNE Photosystem I reaction center subunit III... 65 1e-09 tr|Q85FS9|Q85FS9_CYAME Photosystem I reaction center subunit II ... 65 1e-09 tr|A6MVU7|A6MVU7_RHDSA Photosystem I subunit III OS=Rhodomonas s... 65 2e-09
>tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 253
Score = 90.9 bits (224), Expect = 3e-17 Identities = 41/60 (68%), Positives = 51/60 (85%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 RSYLIA++ KKP +KEIIIDVP+ASR+ WRG IWPL A++ +R+G L+ED ANITVSPR Sbjct: 194 RSYLIAVRPEKKPTQKEIIIDVPIASRVLWRGIIWPLHALNAVRSGTLVEDDANITVSPR 253
>tr|A9NR55|A9NR55_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 175
Score = 90.9 bits (224), Expect = 3e-17 Identities = 41/60 (68%), Positives = 51/60 (85%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 RSYLIA++ KKP +KEIIIDVP+ASR+ WRG IWPL A++ +R+G L+ED ANITVSPR Sbjct: 116 RSYLIAVRPEKKPTQKEIIIDVPIASRVLWRGIIWPLHALNAVRSGTLVEDDANITVSPR 175
>tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_130189 PE=4 SV=1 Length = 240
Score = 89.4 bits (220), Expect = 8e-17 Identities = 43/60 (71%), Positives = 51/60 (85%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 R+YLI ++ SKKP EKEIIIDVPLA R+ +GF WPLAAI ELR+GKL+E +ANITVSPR Sbjct: 181 RAYLIDVRTSKKPTEKEIIIDVPLALRVMSKGFTWPLAAIGELRSGKLVEKSANITVSPR 240
>tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_151795 PE=4 SV=1 Length = 212
Score = 87.8 bits (216), Expect = 2e-16 Identities = 42/60 (70%), Positives = 50/60 (83%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 R+YLI ++ SKKP EKEIIIDVPLA R+ +GF WPLAAI ELR+GKL+E + NITVSPR Sbjct: 153 RAYLIDVRTSKKPTEKEIIIDVPLALRVMSKGFTWPLAAIGELRSGKLVEKSGNITVSPR 212
>tr|Q1WLU7|Q1WLU7_CHLIN Chloroplast photosystem I subunit F (Fragment) OS=Chlamydomonas incerta GN=PsaF PE=2 SV=1 Length = 215
Score = 84.0 bits (206), Expect = 4e-15 Identities = 39/60 (65%), Positives = 47/60 (78%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 R YLIA+K KP +KEIIIDVPLA++LAW+G WPLAA+ EL+ G L+E NITVSPR Sbjct: 156 RQYLIAVKGESKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKEENITVSPR 215
>tr|A8J4S1|A8J4S1_CHLRE Photosystem I reaction center subunit III OS=Chlamydomonas reinhardtii GN=PSAF PE=4 SV=1 Length = 227
Score = 83.6 bits (205), Expect = 5e-15 Identities = 39/60 (65%), Positives = 47/60 (78%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180 R YLIA+K KP +KEIIIDVPLA++LAW+G WPLAA+ EL+ G L+E NITVSPR Sbjct: 168 RQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKEENITVSPR 227
>tr|A9RNK7|A9RNK7_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_47692 PE=4 SV=1 Length = 187
Score = 76.6 bits (187), Expect = 6e-13 Identities = 36/55 (65%), Positives = 45/55 (81%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANI 165 R+YLI ++ SKKP EKEIIIDVPLA R+ +G WP+AAI ELR+GKL+E +ANI Sbjct: 133 RAYLIDVRTSKKPTEKEIIIDVPLALRIMSKGLTWPVAAIGELRSGKLVEKSANI 187
>tr|A7QCS6|A7QCS6_VITVI Chromosome undetermined scaffold_79, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00035532001 PE=4 SV=1 Length = 221
Score = 76.6 bits (187), Expect = 6e-13 Identities = 37/49 (75%), Positives = 41/49 (83%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLI 147 RSYLIAI+D KKP +KEIIIDVPLASRL +RGFIWP+AA E NG LI Sbjct: 169 RSYLIAIRDDKKPTQKEIIIDVPLASRLVFRGFIWPVAAYREFVNGDLI 217
>tr|A5B2H3|A5B2H3_VITVI Putative uncharacterized protein OS=Vitis vinifera GN=VITISV_039382 PE=4 SV=1 Length = 221
Score = 76.6 bits (187), Expect = 6e-13 Identities = 37/49 (75%), Positives = 41/49 (83%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLI 147 RSYLIAI+D KKP +KEIIIDVPLASRL +RGFIWP+AA E NG LI Sbjct: 169 RSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFIWPVAAYREFVNGDLI 217
>tr|Q9TI78|Q9TI78_LACSA Photosystem I subunit III (Fragment) OS=Lactuca sativa GN=psaF PE=2 SV=1 Length = 140
Score = 76.3 bits (186), Expect = 7e-13 Identities = 37/50 (74%), Positives = 42/50 (84%) Frame = +1
Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIE 150 RSYLIAI+D KKP KEIIIDVPLAS L +RGFIWP+AA EL NG+LI+ Sbjct: 88 RSYLIAIRDEKKPTMKEIIIDVPLASSLVFRGFIWPVAAYRELLNGELID 137
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