DK944099
Clone id YMU02A01NGRL0004_P12
Library
Length 284
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0004_P12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
CGATCCTATCTCATTGCTATCAAGGATTCCAAGAAGCCTGCAGAGAAAGAGATCATCATC
GATGTTCCTCTGGCCTCCCGTCTTGCATGGCGTGGTTTTATCTGGCCTCTTGCGGCCATC
TCAGAGCTGAGAAATGGCAAGCTTATTGAGGATGCGGCCAACATCACTGTCTCCCCTCGA
TGAATGGTGGCCTTGCCTTGTGTATTTTGAGTATTGCCGGGCCTTAAGCCTCTGTTGAAT
CTTGTTTTCACAAAAGAAATGGAGACCAACACAAAGAACCATGT
■■Homology search results ■■ -
sp_hit_id P12356
Definition sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, chloroplastic OS=Chlamydomonas reinhardtii
Align length 60
Score (bit) 83.6
E-value 3.0e-16
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944099|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_P12, 5'
(284 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III, ... 84 3e-16
sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III, ... 75 1e-13
sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III, ... 73 4e-13
sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III, ... 72 7e-13
sp|P31083|PSAF_SYNP6 Photosystem I reaction center subunit III O... 70 2e-12
sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III, ... 70 4e-12
sp|Q6B948|PSAF_GRATL Photosystem I reaction center subunit III O... 69 9e-12
sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III O... 67 2e-11
sp|P0A402|PSAF_SYNEN Photosystem I reaction center subunit III O... 67 2e-11
sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III O... 67 4e-11
sp|P51193|PSAF_PORPU Photosystem I reaction center subunit III O... 66 5e-11
sp|P29256|PSAF_SYNY3 Photosystem I reaction center subunit III O... 65 1e-10
sp|P48115|PSAF_CYAPA Photosystem I reaction center subunit III O... 64 2e-10
sp|O78457|PSAF_GUITH Photosystem I reaction center subunit III O... 60 4e-09
sp|P49483|PSAF_ODOSI Photosystem I reaction center subunit III O... 57 3e-08
sp|Q9TLW6|PSAF_CYACA Photosystem I reaction center subunit III O... 56 5e-08
sp|P31091|PSAF_ANAVT Photosystem I reaction center subunit III O... 54 3e-07
sp|P58564|PSAF_ANASP Photosystem I reaction center subunit III O... 53 5e-07
sp|Q9X7I4|PSAF_PROMA Photosystem I reaction center subunit III O... 48 1e-05
sp|O31127|PSAF_MASLA Photosystem I reaction center subunit III O... 48 1e-05
sp|Q7NH05|PSAF_GLOVI Photosystem I reaction center subunit III O... 47 4e-05
sp|A6LEJ0|RL4_PARD8 50S ribosomal protein L4 OS=Parabacteroides ... 32 1.3
sp|A6KYJ4|RL4_BACV8 50S ribosomal protein L4 OS=Bacteroides vulg... 31 2.2
sp|Q8A477|RL4_BACTN 50S ribosomal protein L4 OS=Bacteroides thet... 31 2.2
sp|Q7MTL4|RL4_PORGI 50S ribosomal protein L4 OS=Porphyromonas gi... 30 2.8
sp|Q64NK9|RL4_BACFR 50S ribosomal protein L4 OS=Bacteroides frag... 30 2.8
sp|Q5L8B0|RL4_BACFN 50S ribosomal protein L4 OS=Bacteroides frag... 30 2.8
sp|Q18034|NFX1_CAEEL Transcriptional repressor NF-X1 homolog OS=... 30 3.7
sp|Q9KTB6|HEMH_VIBCH Ferrochelatase OS=Vibrio cholerae GN=hemH P... 29 8.3
sp|Q7VVX8|HEMH_BORPE Ferrochelatase OS=Bordetella pertussis GN=h... 29 8.3

>sp|P12356|PSAF_CHLRE Photosystem I reaction center subunit III,
chloroplastic OS=Chlamydomonas reinhardtii GN=PSAF PE=1
SV=1
Length = 227

Score = 83.6 bits (205), Expect = 3e-16
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
R YLIA+K KP +KEIIIDVPLA++LAW+G WPLAA+ EL+ G L+E NITVSPR
Sbjct: 168 RQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKEENITVSPR 227


>sp|P12355|PSAF_SPIOL Photosystem I reaction center subunit III,
chloroplastic OS=Spinacia oleracea GN=PSAF PE=1 SV=1
Length = 231

Score = 75.1 bits (183), Expect = 1e-13
Identities = 35/51 (68%), Positives = 43/51 (84%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIED 153
RSYLIAI+D KKP +KEIIIDVPLAS L +RGF WP+AA EL NG+L+++
Sbjct: 179 RSYLIAIRDEKKPTQKEIIIDVPLASSLLFRGFSWPVAAYRELLNGELVDN 229


>sp|P46486|PSAF_FLATR Photosystem I reaction center subunit III,
chloroplastic OS=Flaveria trinervia GN=PSAF PE=2 SV=1
Length = 232

Score = 73.2 bits (178), Expect = 4e-13
Identities = 34/50 (68%), Positives = 42/50 (84%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIE 150
RSYLIAI+D KKP +KEIIIDVPLA++L +RGF WP+AA E NG+LI+
Sbjct: 180 RSYLIAIRDEKKPTQKEIIIDVPLATKLLFRGFSWPVAAYREYLNGELID 229


>sp|Q9SHE8|PSAF_ARATH Photosystem I reaction center subunit III,
chloroplastic OS=Arabidopsis thaliana GN=PSAF PE=1 SV=1
Length = 221

Score = 72.4 bits (176), Expect = 7e-13
Identities = 36/49 (73%), Positives = 39/49 (79%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLI 147
RSYLIAI KKPA KEIIIDVPLASR+ +RGFIWP+AA E NG LI
Sbjct: 169 RSYLIAISGEKKPAMKEIIIDVPLASRIIFRGFIWPVAAYREFLNGDLI 217


>sp|P31083|PSAF_SYNP6 Photosystem I reaction center subunit III
OS=Synechococcus sp. (strain ATCC 27144 / PCC 6301 /
SAUG 1402/1) GN=psaF PE=1 SV=2
Length = 159

Score = 70.5 bits (171), Expect = 2e-12
Identities = 36/60 (60%), Positives = 41/60 (68%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
RSYL AIK K A KEI+IDVPLA + + GF WPLAA E +GKL+ A ITVSPR
Sbjct: 100 RSYLQAIKSDKDAAGKEIVIDVPLAVKFSLTGFAWPLAAFQEFSSGKLLAKADEITVSPR 159


>sp|P13192|PSAF_HORVU Photosystem I reaction center subunit III,
chloroplastic OS=Hordeum vulgare GN=PSAF PE=1 SV=2
Length = 235

Score = 69.7 bits (169), Expect = 4e-12
Identities = 35/55 (63%), Positives = 42/55 (76%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANI 165
RSYLIA+ KKPA +EIIIDV LA+R+ RGFIWP+AA EL NG L+ D A+I
Sbjct: 179 RSYLIAVSGEKKPAMREIIIDVELAARIIPRGFIWPVAAYRELINGDLVVDDADI 233


>sp|Q6B948|PSAF_GRATL Photosystem I reaction center subunit III
OS=Gracilaria tenuistipitata var. liui GN=psaF PE=3 SV=1
Length = 187

Score = 68.6 bits (166), Expect = 9e-12
Identities = 33/60 (55%), Positives = 41/60 (68%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
R YL I + KP EKEII+DVPLA + GF WPLAAI EL +G+L+ D +I +SPR
Sbjct: 128 RGYLRDISQTTKPTEKEIILDVPLALKYCLSGFTWPLAAIKELTSGELVADNKDIPISPR 187


>sp|P0A401|PSAF_THEEB Photosystem I reaction center subunit III
OS=Thermosynechococcus elongatus (strain BP-1) GN=psaF
PE=1 SV=1
Length = 164

Score = 67.4 bits (163), Expect = 2e-11
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
R+YLIA+++S + EKEIIIDVPLA + GF WPLAA+ EL +G+L ITVSPR
Sbjct: 105 RAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEITVSPR 164


>sp|P0A402|PSAF_SYNEN Photosystem I reaction center subunit III
OS=Synechococcus elongatus naegeli GN=psaF PE=1 SV=1
Length = 164

Score = 67.4 bits (163), Expect = 2e-11
Identities = 34/60 (56%), Positives = 43/60 (71%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
R+YLIA+++S + EKEIIIDVPLA + GF WPLAA+ EL +G+L ITVSPR
Sbjct: 105 RAYLIAVRNSGEANEKEIIIDVPLAIKCMLTGFAWPLAALKELASGELTAKDNEITVSPR 164


>sp|Q1XDU4|PSAF_PORYE Photosystem I reaction center subunit III
OS=Porphyra yezoensis GN=psaF PE=3 SV=1
Length = 181

Score = 66.6 bits (161), Expect = 4e-11
Identities = 32/60 (53%), Positives = 41/60 (68%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
R YL+++ + KP EKEII+DVPLA + GF WPLAA E +G+LI +ITVSPR
Sbjct: 122 RGYLLSVAKTSKPTEKEIILDVPLAIKFMSSGFAWPLAAWQEFSSGQLIASNDDITVSPR 181


tr_hit_id A9NWN3
Definition tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 60
Score (bit) 90.9
E-value 3.0e-17
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944099|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0004_P12, 5'
(284 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea... 91 3e-17
tr|A9NR55|A9NR55_PICSI Putative uncharacterized protein OS=Picea... 91 3e-17
tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella paten... 89 8e-17
tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella paten... 88 2e-16
tr|Q1WLU7|Q1WLU7_CHLIN Chloroplast photosystem I subunit F (Frag... 84 4e-15
tr|A8J4S1|A8J4S1_CHLRE Photosystem I reaction center subunit III... 84 5e-15
tr|A9RNK7|A9RNK7_PHYPA Predicted protein (Fragment) OS=Physcomit... 77 6e-13
tr|A7QCS6|A7QCS6_VITVI Chromosome undetermined scaffold_79, whol... 77 6e-13
tr|A5B2H3|A5B2H3_VITVI Putative uncharacterized protein OS=Vitis... 77 6e-13
tr|Q9TI78|Q9TI78_LACSA Photosystem I subunit III (Fragment) OS=L... 76 7e-13
tr|A9SUQ3|A9SUQ3_PHYPA Predicted protein (Fragment) OS=Physcomit... 75 1e-12
tr|Q84QE7|Q84QE7_TOBAC Putative photosystem I subunit III OS=Nic... 75 2e-12
tr|Q9XQB4|Q9XQB4_PHAAU Photosystem I reaction center subunit III... 74 4e-12
tr|B7FF89|B7FF89_MEDTR Putative uncharacterized protein (Fragmen... 74 4e-12
tr|Q31NT9|Q31NT9_SYNE7 Photosystem I reaction center subunit III... 70 4e-11
tr|B0JUV3|B0JUV3_MICAN Photosystem I subunit III OS=Microcystis ... 69 1e-10
tr|A8YE22|A8YE22_MICAE PsaF protein OS=Microcystis aeruginosa PC... 69 1e-10
tr|Q2EHP8|Q2EHP8_POPCA Putative chloroplast photosystem I subuni... 69 1e-10
tr|B6SRI3|B6SRI3_MAIZE Photosystem I reaction center subunit III... 69 1e-10
tr|A9PI20|A9PI20_POPTR Putative uncharacterized protein OS=Popul... 69 1e-10
tr|B4VLW3|B4VLW3_9CYAN Photosystem I reaction center subunit III... 68 2e-10
tr|Q9SLW9|Q9SLW9_TOBAC mRNA, 327 bp sequence (Fragment) OS=Nicot... 67 3e-10
tr|Q9ZSU5|Q9ZSU5_ORYSA Photosystem-1 F subunit OS=Oryza sativa G... 67 6e-10
tr|Q8S7H8|Q8S7H8_ORYSJ cDNA clone:001-016-D02, full insert seque... 67 6e-10
tr|Q0DN30|Q0DN30_ORYSJ Os03g0778100 protein (Fragment) OS=Oryza ... 67 6e-10
tr|A2XMI1|A2XMI1_ORYSI Putative uncharacterized protein OS=Oryza... 67 6e-10
tr|Q4CB19|Q4CB19_CROWT Photosystem I reaction center protein Psa... 65 1e-09
tr|B4WS90|B4WS90_9SYNE Photosystem I reaction center subunit III... 65 1e-09
tr|Q85FS9|Q85FS9_CYAME Photosystem I reaction center subunit II ... 65 1e-09
tr|A6MVU7|A6MVU7_RHDSA Photosystem I subunit III OS=Rhodomonas s... 65 2e-09

>tr|A9NWN3|A9NWN3_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 253

Score = 90.9 bits (224), Expect = 3e-17
Identities = 41/60 (68%), Positives = 51/60 (85%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
RSYLIA++ KKP +KEIIIDVP+ASR+ WRG IWPL A++ +R+G L+ED ANITVSPR
Sbjct: 194 RSYLIAVRPEKKPTQKEIIIDVPIASRVLWRGIIWPLHALNAVRSGTLVEDDANITVSPR 253


>tr|A9NR55|A9NR55_PICSI Putative uncharacterized protein OS=Picea
sitchensis PE=2 SV=1
Length = 175

Score = 90.9 bits (224), Expect = 3e-17
Identities = 41/60 (68%), Positives = 51/60 (85%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
RSYLIA++ KKP +KEIIIDVP+ASR+ WRG IWPL A++ +R+G L+ED ANITVSPR
Sbjct: 116 RSYLIAVRPEKKPTQKEIIIDVPIASRVLWRGIIWPLHALNAVRSGTLVEDDANITVSPR 175


>tr|A9SHP6|A9SHP6_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_130189 PE=4 SV=1
Length = 240

Score = 89.4 bits (220), Expect = 8e-17
Identities = 43/60 (71%), Positives = 51/60 (85%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
R+YLI ++ SKKP EKEIIIDVPLA R+ +GF WPLAAI ELR+GKL+E +ANITVSPR
Sbjct: 181 RAYLIDVRTSKKPTEKEIIIDVPLALRVMSKGFTWPLAAIGELRSGKLVEKSANITVSPR 240


>tr|A9TWD4|A9TWD4_PHYPA Predicted protein OS=Physcomitrella patens
subsp. patens GN=PHYPADRAFT_151795 PE=4 SV=1
Length = 212

Score = 87.8 bits (216), Expect = 2e-16
Identities = 42/60 (70%), Positives = 50/60 (83%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
R+YLI ++ SKKP EKEIIIDVPLA R+ +GF WPLAAI ELR+GKL+E + NITVSPR
Sbjct: 153 RAYLIDVRTSKKPTEKEIIIDVPLALRVMSKGFTWPLAAIGELRSGKLVEKSGNITVSPR 212


>tr|Q1WLU7|Q1WLU7_CHLIN Chloroplast photosystem I subunit F
(Fragment) OS=Chlamydomonas incerta GN=PsaF PE=2 SV=1
Length = 215

Score = 84.0 bits (206), Expect = 4e-15
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
R YLIA+K KP +KEIIIDVPLA++LAW+G WPLAA+ EL+ G L+E NITVSPR
Sbjct: 156 RQYLIAVKGESKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKEENITVSPR 215


>tr|A8J4S1|A8J4S1_CHLRE Photosystem I reaction center subunit III
OS=Chlamydomonas reinhardtii GN=PSAF PE=4 SV=1
Length = 227

Score = 83.6 bits (205), Expect = 5e-15
Identities = 39/60 (65%), Positives = 47/60 (78%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANITVSPR 180
R YLIA+K KP +KEIIIDVPLA++LAW+G WPLAA+ EL+ G L+E NITVSPR
Sbjct: 168 RQYLIAVKGEAKPTDKEIIIDVPLATKLAWQGAGWPLAAVQELQRGTLLEKEENITVSPR 227


>tr|A9RNK7|A9RNK7_PHYPA Predicted protein (Fragment)
OS=Physcomitrella patens subsp. patens
GN=PHYPADRAFT_47692 PE=4 SV=1
Length = 187

Score = 76.6 bits (187), Expect = 6e-13
Identities = 36/55 (65%), Positives = 45/55 (81%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIEDAANI 165
R+YLI ++ SKKP EKEIIIDVPLA R+ +G WP+AAI ELR+GKL+E +ANI
Sbjct: 133 RAYLIDVRTSKKPTEKEIIIDVPLALRIMSKGLTWPVAAIGELRSGKLVEKSANI 187


>tr|A7QCS6|A7QCS6_VITVI Chromosome undetermined scaffold_79, whole
genome shotgun sequence OS=Vitis vinifera
GN=GSVIVT00035532001 PE=4 SV=1
Length = 221

Score = 76.6 bits (187), Expect = 6e-13
Identities = 37/49 (75%), Positives = 41/49 (83%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLI 147
RSYLIAI+D KKP +KEIIIDVPLASRL +RGFIWP+AA E NG LI
Sbjct: 169 RSYLIAIRDDKKPTQKEIIIDVPLASRLVFRGFIWPVAAYREFVNGDLI 217


>tr|A5B2H3|A5B2H3_VITVI Putative uncharacterized protein OS=Vitis
vinifera GN=VITISV_039382 PE=4 SV=1
Length = 221

Score = 76.6 bits (187), Expect = 6e-13
Identities = 37/49 (75%), Positives = 41/49 (83%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLI 147
RSYLIAI+D KKP +KEIIIDVPLASRL +RGFIWP+AA E NG LI
Sbjct: 169 RSYLIAIRDEKKPTQKEIIIDVPLASRLVFRGFIWPVAAYREFVNGDLI 217


>tr|Q9TI78|Q9TI78_LACSA Photosystem I subunit III (Fragment)
OS=Lactuca sativa GN=psaF PE=2 SV=1
Length = 140

Score = 76.3 bits (186), Expect = 7e-13
Identities = 37/50 (74%), Positives = 42/50 (84%)
Frame = +1

Query: 1 RSYLIAIKDSKKPAEKEIIIDVPLASRLAWRGFIWPLAAISELRNGKLIE 150
RSYLIAI+D KKP KEIIIDVPLAS L +RGFIWP+AA EL NG+LI+
Sbjct: 88 RSYLIAIRDEKKPTMKEIIIDVPLASSLVFRGFIWPVAAYRELLNGELID 137