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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944112
Clone id YMU02A01NGRL0005_A06
Library
Length 423
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_A06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
AGATTTAGGCGTACGAAAATTAATCGTCCTATACGACGAGCGACACATAGCGGGCGAGCG
AGCGAGCCATGGCGTTACCTTCTCATGCAGTCGCAGCAGCCACCAAGAGTGGGCCCAGTG
TGGTGAAGGAAATCATCTATGGCTTATCAGCAGGCCTTTTAGGGGGGGCTCTGTGGAAGA
TTCACCATTTGAATGAGAGGAGGAAAACTGAGGAGTTTTATTCTATGCTAGAGAAGAATG
CAATTTCAGTTGTGGTGGAAGAATGATAGTGGCATAGTAACAATTGACTATTCATGTGAA
ACTCGAAGGAGACTTCAATATTGGACTGACAGCATTTTATCATTTGCAGAAATAAGTGAT
CTGTCAATTACACCCCTCTATTTGATGCTGTTATGGACAGCTACCTTTCTAAAGAAGAAT
AAC
■■Homology search results ■■ -
sp_hit_id Q42841
Definition sp|Q42841|COX5C_HORVU Cytochrome c oxidase polypeptide Vc OS=Hordeum vulgare
Align length 58
Score (bit) 65.9
E-value 6.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944112|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A06, 5'
         (423 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q42841|COX5C_HORVU Cytochrome c oxidase polypeptide Vc OS=Hor...    66   6e-11
sp|Q9SXX7|COX5C_ORYSJ Cytochrome c oxidase polypeptide Vc OS=Ory...    65   1e-10
sp|Q9FNE0|CX5C4_ARATH Putative cytochrome c oxidase polypeptide ...    64   2e-10
sp|Q9FLK2|CX5C3_ARATH Probable cytochrome c oxidase polypeptide ...    62   9e-10
sp|Q9LZQ0|CX5C2_ARATH Cytochrome c oxidase polypeptide Vc-2 OS=A...    62   9e-10
sp|O22912|CX5C1_ARATH Probable cytochrome c oxidase polypeptide ...    62   1e-09
sp|Q8VY39|CX5C2_HELAN Cytochrome c oxidase polypeptide Vc-2 OS=H...    60   5e-09
sp|P19173|COX5C_IPOBA Cytochrome c oxidase polypeptide Vc OS=Ipo...    59   8e-09
sp|Q8VY40|CX5C1_HELAN Cytochrome c oxidase polypeptide Vc-1 OS=H...    58   2e-08
sp|Q89LR8|SYV_BRAJA Valyl-tRNA synthetase OS=Bradyrhizobium japo...    30   5.2  
sp|Q8TJQ0|KAD6_METAC Putative adenylate kinase OS=Methanosarcina...    29   6.6  

>sp|Q42841|COX5C_HORVU Cytochrome c oxidase polypeptide Vc
           OS=Hordeum vulgare GN=COX5C PE=3 SV=3
          Length = 63

 Score = 65.9 bits (159), Expect = 6e-11
 Identities = 34/58 (58%), Positives = 36/58 (62%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           VA AT  GPSVVKEI             WK+HH NE+RKT  FY MLEK  ISVVVEE
Sbjct: 6   VAHATLKGPSVVKEIFIGLTLGLVAGGMWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63


>sp|Q9SXX7|COX5C_ORYSJ Cytochrome c oxidase polypeptide Vc OS=Oryza
           sativa subsp. japonica GN=COX5C PE=3 SV=3
          Length = 63

 Score = 65.1 bits (157), Expect = 1e-10
 Identities = 33/58 (56%), Positives = 36/58 (62%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           +A AT  GPSVVKEI             WK+HH NE+RKT  FY MLEK  ISVVVEE
Sbjct: 6   IAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63


>sp|Q9FNE0|CX5C4_ARATH Putative cytochrome c oxidase polypeptide
           Vc-4 OS=Arabidopsis thaliana GN=At5g40382 PE=3 SV=1
          Length = 65

 Score = 63.9 bits (154), Expect = 2e-10
 Identities = 30/58 (51%), Positives = 37/58 (63%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           +  A   GPSVVKEIIY           WK+HH N +R+T+EFY +LEK  ISVVVE+
Sbjct: 7   IGKAVYKGPSVVKEIIYGITLGFAVGGLWKMHHWNNQRRTKEFYDLLEKGEISVVVED 64


>sp|Q9FLK2|CX5C3_ARATH Probable cytochrome c oxidase polypeptide
           Vc-3 OS=Arabidopsis thaliana GN=At5g61310 PE=2 SV=1
          Length = 64

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 29/63 (46%), Positives = 37/63 (58%)
 Frame = +3

Query: 75  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVV 254
           +  H +A AT  GPSVVKE++            WK+HH NE+RKT  FY +LE+  I VV
Sbjct: 1   MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 255 VEE 263
           V E
Sbjct: 61  VTE 63


>sp|Q9LZQ0|CX5C2_ARATH Cytochrome c oxidase polypeptide Vc-2
           OS=Arabidopsis thaliana GN=At3g62400 PE=2 SV=1
          Length = 64

 Score = 62.0 bits (149), Expect = 9e-10
 Identities = 30/63 (47%), Positives = 36/63 (57%)
 Frame = +3

Query: 75  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVV 254
           +  H VA AT  GPSVVKE+I            WK+HH NE+RKT  FY +LE+  I VV
Sbjct: 1   MAGHKVAHATLKGPSVVKELIIGLTLGLAAGGLWKMHHWNEQRKTRTFYDLLERGEIGVV 60

Query: 255 VEE 263
             E
Sbjct: 61  ASE 63


>sp|O22912|CX5C1_ARATH Probable cytochrome c oxidase polypeptide
           Vc-1 OS=Arabidopsis thaliana GN=At2g47380 PE=1 SV=1
          Length = 64

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 30/63 (47%), Positives = 36/63 (57%)
 Frame = +3

Query: 75  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVV 254
           +  H VA AT  GPSVVKE+             WK+HH NE+RKT  FY +LE+  ISVV
Sbjct: 1   MAGHKVAHATLKGPSVVKELFIGLALGLAAGGLWKMHHWNEQRKTRTFYDLLERGEISVV 60

Query: 255 VEE 263
             E
Sbjct: 61  AAE 63


>sp|Q8VY39|CX5C2_HELAN Cytochrome c oxidase polypeptide Vc-2
           OS=Helianthus annuus GN=COX5C2 PE=3 SV=1
          Length = 64

 Score = 59.7 bits (143), Expect = 5e-09
 Identities = 29/58 (50%), Positives = 35/58 (60%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           VA     GPSVVKE++            WK+HH NE+RKT  FY +LEK  ISVVV+E
Sbjct: 6   VAHPVLKGPSVVKELVIGTVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKGEISVVVDE 63


>sp|P19173|COX5C_IPOBA Cytochrome c oxidase polypeptide Vc
           OS=Ipomoea batatas GN=COX5C PE=1 SV=3
          Length = 64

 Score = 58.9 bits (141), Expect = 8e-09
 Identities = 28/58 (48%), Positives = 35/58 (60%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           VA     GPSVVKE++            WK+HH N +R+T+EFY MLEK  ISVV +E
Sbjct: 6   VAHLVYKGPSVVKELVIGFSLGLVAGGFWKMHHWNSQRRTKEFYDMLEKGQISVVADE 63


>sp|Q8VY40|CX5C1_HELAN Cytochrome c oxidase polypeptide Vc-1
           OS=Helianthus annuus GN=COX5C1 PE=3 SV=1
          Length = 63

 Score = 57.8 bits (138), Expect = 2e-08
 Identities = 29/58 (50%), Positives = 34/58 (58%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           VA     GPS VKE+I            WK+HH NE+RKT  FY +LEK  ISVVV+E
Sbjct: 6   VAHPVLKGPSEVKELIIGSVLGLAAGGLWKMHHWNEQRKTRAFYDLLEKGEISVVVQE 63


>sp|Q89LR8|SYV_BRAJA Valyl-tRNA synthetase OS=Bradyrhizobium
           japonicum GN=valS PE=3 SV=1
          Length = 958

 Score = 29.6 bits (65), Expect = 5.2
 Identities = 14/33 (42%), Positives = 18/33 (54%)
 Frame = +1

Query: 268 SGIVTIDYSCETRRRLQYWTDSILSFAEISDLS 366
           + +V    S ETR R   WTD I   A +SD+S
Sbjct: 830 TALVLAGASAETRERAPRWTDVIKRMARLSDIS 862
tr_hit_id A9TII2
Definition tr|A9TII2|A9TII2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens
Align length 65
Score (bit) 70.1
E-value 5.0e-11
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944112|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A06, 5'
         (423 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TII2|A9TII2_PHYPA Predicted protein OS=Physcomitrella paten...    70   5e-11
tr|A9SCN6|A9SCN6_PHYPA Predicted protein OS=Physcomitrella paten...    70   5e-11
tr|A3CIF7|A3CIF7_ORYSJ Putative uncharacterized protein OS=Oryza...    65   2e-09
tr|B4FFJ1|B4FFJ1_MAIZE Cytochrome c oxidase polypeptide Vc OS=Ze...    65   2e-09
tr|A1YMW4|A1YMW4_BRACM Cytochrome-c oxidase OS=Brassica campestr...    64   3e-09
tr|A7PRR4|A7PRR4_VITVI Chromosome chr14 scaffold_27, whole genom...    64   4e-09
tr|B6TQW4|B6TQW4_MAIZE Cytochrome c oxidase polypeptide Vc OS=Ze...    64   5e-09
tr|Q2HIR0|Q2HIR0_ARATH At5g61310 OS=Arabidopsis thaliana PE=4 SV=1     62   1e-08
tr|B6T216|B6T216_MAIZE Cytochrome c oxidase polypeptide Vc OS=Ze...    61   2e-08
tr|A9NJT0|A9NJT0_PICSI Putative uncharacterized protein OS=Picea...    60   7e-08
tr|A9PJU3|A9PJU3_POPJC Putative uncharacterized protein OS=Popul...    59   1e-07
tr|A9P9E1|A9P9E1_POPTR Putative uncharacterized protein OS=Popul...    59   1e-07
tr|B6T8U6|B6T8U6_MAIZE Cytochrome c oxidase polypeptide Vc OS=Ze...    59   2e-07
tr|A7PM59|A7PM59_VITVI Chromosome chr14 scaffold_21, whole genom...    53   9e-06
tr|Q9ZTN1|Q9ZTN1_PETHY PGPS/D8 OS=Petunia hybrida GN=PGPS/D8 PE=...    34   3.1  
tr|B4D1I1|B4D1I1_9BACT Putative uncharacterized protein OS=Chtho...    34   4.1  

>tr|A9TII2|A9TII2_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_222607 PE=4 SV=1
          Length = 68

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 34/65 (52%), Positives = 40/65 (61%)
 Frame = +3

Query: 66  AMALPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAI 245
           A  LP+H  A A K+ P++VKEI Y           WKIHHLNERRKTEEFY+ LE   I
Sbjct: 4   ASKLPAHVAAQANKASPNLVKEIFYGIGLGIFGGSFWKIHHLNERRKTEEFYARLEAGEI 63

Query: 246 SVVVE 260
           +V  E
Sbjct: 64  TVNAE 68


>tr|A9SCN6|A9SCN6_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_210887 PE=4 SV=1
          Length = 68

 Score = 70.1 bits (170), Expect = 5e-11
 Identities = 34/65 (52%), Positives = 40/65 (61%)
 Frame = +3

Query: 66  AMALPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAI 245
           A  LP+H  A A K+ P++VKEI Y           WKIHHLNERRKTEEFY+ LE   I
Sbjct: 4   AAKLPAHVAAQANKASPNLVKEIFYGIGLGIFGGSFWKIHHLNERRKTEEFYARLEAGEI 63

Query: 246 SVVVE 260
           +V  E
Sbjct: 64  TVNAE 68


>tr|A3CIF7|A3CIF7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_035079 PE=4 SV=1
          Length = 63

 Score = 65.1 bits (157), Expect = 2e-09
 Identities = 33/58 (56%), Positives = 36/58 (62%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           +A AT  GPSVVKEI             WK+HH NE+RKT  FY MLEK  ISVVVEE
Sbjct: 6   IAHATLKGPSVVKEICIGLTLGLVAGGLWKMHHWNEQRKTRSFYDMLEKGQISVVVEE 63


>tr|B4FFJ1|B4FFJ1_MAIZE Cytochrome c oxidase polypeptide Vc OS=Zea
           mays PE=4 SV=1
          Length = 63

 Score = 64.7 bits (156), Expect = 2e-09
 Identities = 33/58 (56%), Positives = 36/58 (62%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           VA AT  GPSVVKEI             WK+HH NE+RKT  FY ML+K  ISVVVEE
Sbjct: 6   VAHATLKGPSVVKEIFIGLTLGLIAGGMWKMHHWNEQRKTRSFYDMLDKGQISVVVEE 63


>tr|A1YMW4|A1YMW4_BRACM Cytochrome-c oxidase OS=Brassica campestris
           PE=4 SV=1
          Length = 63

 Score = 64.3 bits (155), Expect = 3e-09
 Identities = 30/63 (47%), Positives = 39/63 (61%)
 Frame = +3

Query: 75  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVV 254
           +  H +A AT  GPSVVKE++            WK+HH NE+RKT  FY +L+K+ ISVV
Sbjct: 1   MAGHKIAHATLKGPSVVKELVIGLALGLAAGGLWKMHHWNEQRKTRAFYDLLDKDEISVV 60

Query: 255 VEE 263
           V E
Sbjct: 61  VAE 63


>tr|A7PRR4|A7PRR4_VITVI Chromosome chr14 scaffold_27, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00022603001
           PE=4 SV=1
          Length = 63

 Score = 63.9 bits (154), Expect = 4e-09
 Identities = 31/63 (49%), Positives = 39/63 (61%)
 Frame = +3

Query: 75  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVV 254
           + +H +A AT  GPSVVKEI             WK+HH NE++K   FY MLEK+ ISVV
Sbjct: 1   MAAHKIAHATLKGPSVVKEICIGATLGLLAGGLWKMHHWNEQKKLRTFYDMLEKDQISVV 60

Query: 255 VEE 263
           V+E
Sbjct: 61  VDE 63


>tr|B6TQW4|B6TQW4_MAIZE Cytochrome c oxidase polypeptide Vc OS=Zea
           mays PE=4 SV=1
          Length = 77

 Score = 63.5 bits (153), Expect = 5e-09
 Identities = 32/58 (55%), Positives = 36/58 (62%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           VA AT  GPSVVKEI             WK+HH NE+RKT  FY ML+K  ISVVVE+
Sbjct: 6   VAHATLKGPSVVKEIFIGLTLGLIAGGMWKMHHWNEQRKTRSFYDMLDKGQISVVVED 63


>tr|Q2HIR0|Q2HIR0_ARATH At5g61310 OS=Arabidopsis thaliana PE=4 SV=1
          Length = 64

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 29/63 (46%), Positives = 37/63 (58%)
 Frame = +3

Query: 75  LPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVV 254
           +  H +A AT  GPSVVKE++            WK+HH NE+RKT  FY +LE+  I VV
Sbjct: 1   MAGHKIAHATLKGPSVVKELVIGLTLGLAAGGLWKMHHWNEQRKTRVFYDLLERGEIGVV 60

Query: 255 VEE 263
           V E
Sbjct: 61  VTE 63


>tr|B6T216|B6T216_MAIZE Cytochrome c oxidase polypeptide Vc OS=Zea
           mays PE=4 SV=1
          Length = 63

 Score = 61.2 bits (147), Expect = 2e-08
 Identities = 32/58 (55%), Positives = 35/58 (60%)
 Frame = +3

Query: 90  VAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAISVVVEE 263
           VA AT  GPSVVKEI             WK+H  NE+RKT  FY ML+K  ISVVVEE
Sbjct: 6   VAHATLKGPSVVKEIFIGLTLGLIAGGMWKMHXWNEQRKTRSFYDMLDKGQISVVVEE 63


>tr|A9NJT0|A9NJT0_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=4 SV=1
          Length = 66

 Score = 59.7 bits (143), Expect = 7e-08
 Identities = 32/66 (48%), Positives = 38/66 (57%)
 Frame = +3

Query: 66  AMALPSHAVAAATKSGPSVVKEIIYXXXXXXXXXXXWKIHHLNERRKTEEFYSMLEKNAI 245
           A  +PSH    A K GPSV+KEI Y           WK++   E+RKT EFY MLE+  I
Sbjct: 3   AHKVPSHV---ALKGGPSVIKEICYGLALGLMAGGVWKMYQWREQRKTREFYEMLERGVI 59

Query: 246 SVVVEE 263
           SVV EE
Sbjct: 60  SVVHEE 65