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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944113
Clone id YMU02A01NGRL0005_A07
Library
Length 380
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_A07. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TCTCTTTCTATCCGCCCTTCGTCACTGTAAAGCCTAGTTCGCTACCCCCTCCTCCCTTCA
TGCTACCCATCCTCCCCTATCTTCATATTGTTTTTCTTCAAGGTGATACGACCAAACCTT
CATAGCCTTTGTTGCAATCACTGCCCCCCTTGTTTTGTCATTAACCTCTTCTTTTGAATG
TAATGAGATTGTGAAACGTAATGAGAATATCATTAGCGCACTTCACTGAAAACTAAAAGA
AAAAACAACCTCCAAATCATGTCGGCCACCCCGGCCCTCCAGAAACTATCTAGACCATTC
TTTTGATCCGCGGTCCCAGTAAATAAATGAACATGGTAATAGCTTTTTCCTAGGAAATCC
TGGTCAACACAAGAGCATGA
■■Homology search results ■■ -
sp_hit_id P12769
Definition sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methanobacterium thermoautotrophicum
Align length 63
Score (bit) 29.3
E-value 6.3
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944113|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A07, 5'
         (380 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase OS=Methano...    29   6.3  

>sp|P12769|PHR_METTH Deoxyribodipyrimidine photo-lyase
           OS=Methanobacterium thermoautotrophicum GN=phr PE=3 SV=2
          Length = 445

 Score = 29.3 bits (64), Expect = 6.3
 Identities = 21/63 (33%), Positives = 32/63 (50%), Gaps = 6/63 (9%)
 Frame = +2

Query: 143 APLVLSLTSSF--EC----NEIVKRNENIISALH*KLKEKTTSKSCRPPRPSRNYLDHSF 304
           +PL L+L +S   EC     E++ R E  ++ +H    +  +S SC P    R  +DH  
Sbjct: 260 SPLYLALRASEAGECPEFLEELIVRRELSMNFVH--YSDSYSSISCLPEWAQRTLMDHVA 317

Query: 305 DPR 313
           DPR
Sbjct: 318 DPR 320
tr_hit_id Q4RLF7
Definition tr|Q4RLF7|Q4RLF7_TETNG Chromosome undetermined SCAF15021, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length 30
Score (bit) 34.3
E-value 3.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944113|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A07, 5'
         (380 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q4RLF7|Q4RLF7_TETNG Chromosome undetermined SCAF15021, whole ...    34   3.1  

>tr|Q4RLF7|Q4RLF7_TETNG Chromosome undetermined SCAF15021, whole
           genome shotgun sequence. (Fragment) OS=Tetraodon
           nigroviridis GN=GSTENG00032509001 PE=4 SV=1
          Length = 571

 Score = 34.3 bits (77), Expect = 3.1
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +2

Query: 188 IVKRNENIISALH*KLKEKTTSKSCRPPRP 277
           +VKRNE++   LH KLKE    +S R PRP
Sbjct: 330 LVKRNESMAHTLHAKLKEPAADESKRGPRP 359