DK944115 |
Clone id |
YMU02A01NGRL0005_A10 |
Library |
YMU02 |
Length |
391 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_A10. 5' end sequence. |
Accession |
DK944115 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1604Contig1 |
Sequence |
GGAGGGATATCTTTAAAGTTGCAAGAAGAGGAGCGGGAGAGGCGTATGGATTTTGTACCC GAGGAAAGCGCTATCAAGACAGATATCATTGAGGTCGATAAGGAGACAATGGATCTGTTG CAGCACCTCAACATGGGGCAGCTTCCAGGAGTTGTTAAGCAGGAGGCTCCTGCTGGTGGT GGCAACTTTGGAAAGCCGCAACCTGTAGGTGGATTCCAAGGTCCCCGACGGAACTGAGTT CTCCCTTTAGGGTAGTGGCTTACATTGAATGTGCAGAAGCCTGACTATCAATTGGCCAAA TTTTGGCAGTTTTTTTGTAAAACAGAGGACTTATCACTTATGAGTACTATCGGCTTTTGT TCGAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P49215 |
Definition |
sp|P49215|RS17_SOLLC 40S ribosomal protein S17 OS=Solanum lycopersicum |
Align length |
75 |
Score (bit) |
94.4 |
E-value |
2.0e-19 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9S0I3 |
Definition |
tr|A9S0I3|A9S0I3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
75 |
Score (bit) |
116.0 |
E-value |
5.0e-25 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944115|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_A10, 5' (363 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9S0I3|A9S0I3_PHYPA Predicted protein OS=Physcomitrella paten... 116 5e-25 tr|A9S0I2|A9S0I2_PHYPA Predicted protein OS=Physcomitrella paten... 116 5e-25 tr|A9RCZ1|A9RCZ1_PHYPA Predicted protein (Fragment) OS=Physcomit... 115 8e-25 tr|A9RCZ0|A9RCZ0_PHYPA Predicted protein OS=Physcomitrella paten... 115 8e-25 tr|A9P1Y2|A9P1Y2_PICSI Putative uncharacterized protein OS=Picea... 109 8e-23 tr|A9NK75|A9NK75_PICSI Putative uncharacterized protein OS=Picea... 109 8e-23 tr|A9NP61|A9NP61_PICSI Putative uncharacterized protein OS=Picea... 101 2e-20 tr|A9SGG5|A9SGG5_PHYPA Predicted protein (Fragment) OS=Physcomit... 96 9e-19 tr|Q6RJY3|Q6RJY3_CAPAN 40S ribosomal protein S17 OS=Capsicum ann... 92 1e-17 tr|Q3HRX4|Q3HRX4_SOLTU 40S ribosomal protein S17-like protein OS... 92 1e-17 tr|A5BHY1|A5BHY1_VITVI Putative uncharacterized protein (Chromos... 87 3e-16 tr|B6TD69|B6TD69_MAIZE 40S ribosomal protein S17-4 OS=Zea mays P... 86 7e-16 tr|B4FID1|B4FID1_MAIZE Putative uncharacterized protein OS=Zea m... 85 2e-15 tr|B7FH86|B7FH86_MEDTR Putative uncharacterized protein OS=Medic... 82 1e-14 tr|B7FGG4|B7FGG4_MEDTR Putative uncharacterized protein OS=Medic... 82 1e-14 tr|Q01A77|Q01A77_OSTTA Putative 40S ribosomal protein S17 (ISS) ... 81 2e-14 tr|A8JGK1|A8JGK1_CHLRE Ribosomal protein S17 OS=Chlamydomonas re... 81 2e-14 tr|A4RWR0|A4RWR0_OSTLU Ribosomal protein S17, component of cytos... 81 3e-14 tr|A7PP71|A7PP71_VITVI Chromosome chr8 scaffold_23, whole genome... 80 4e-14 tr|A5B935|A5B935_VITVI Putative uncharacterized protein OS=Vitis... 80 4e-14 tr|B6UH57|B6UH57_MAIZE 40S ribosomal protein S17-4 OS=Zea mays P... 80 5e-14 tr|B7FGP4|B7FGP4_MEDTR Putative uncharacterized protein OS=Medic... 80 7e-14 tr|Q7XEQ3|Q7XEQ3_ORYSJ Os10g0411800 protein OS=Oryza sativa subs... 79 9e-14 tr|A9PEJ6|A9PEJ6_POPTR Putative uncharacterized protein OS=Popul... 79 9e-14 tr|A9PA81|A9PA81_POPTR Putative uncharacterized protein OS=Popul... 79 9e-14 tr|A9PA78|A9PA78_POPTR Putative uncharacterized protein OS=Popul... 79 9e-14 tr|A3C4P3|A3C4P3_ORYSJ Putative uncharacterized protein OS=Oryza... 79 9e-14 tr|A2Z764|A2Z764_ORYSI Putative uncharacterized protein OS=Oryza... 79 9e-14 tr|Q8H7V0|Q8H7V0_ORYSJ Os03g0109500 protein OS=Oryza sativa subs... 79 1e-13 tr|B7FGM8|B7FGM8_MEDTR Putative uncharacterized protein OS=Medic... 79 1e-13
>tr|A9S0I3|A9S0I3_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_207482 PE=4 SV=1 Length = 144
Score = 116 bits (291), Expect = 5e-25 Identities = 59/75 (78%), Positives = 65/75 (86%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQEAPAGGG 183 GISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+Q AP GG Sbjct: 68 GISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQQAAPTAGG 127
Query: 184 NFGKPQPVGGFQGPR 228 F KPQ GG+QG R Sbjct: 128 GFFKPQG-GGYQGNR 141
>tr|A9S0I2|A9S0I2_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_72969 PE=4 SV=1 Length = 146
Score = 116 bits (291), Expect = 5e-25 Identities = 59/75 (78%), Positives = 65/75 (86%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQEAPAGGG 183 GISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+Q AP GG Sbjct: 70 GISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQQAAPTAGG 129
Query: 184 NFGKPQPVGGFQGPR 228 F KPQ GG+QG R Sbjct: 130 GFFKPQG-GGYQGNR 143
>tr|A9RCZ1|A9RCZ1_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_111833 PE=4 SV=1 Length = 144
Score = 115 bits (289), Expect = 8e-25 Identities = 59/75 (78%), Positives = 65/75 (86%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQEAPAGGG 183 GISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+Q AP GG Sbjct: 68 GISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQQAAPTTGG 127
Query: 184 NFGKPQPVGGFQGPR 228 F KPQ GG+QG R Sbjct: 128 GFFKPQG-GGYQGNR 141
>tr|A9RCZ0|A9RCZ0_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_158551 PE=4 SV=1 Length = 144
Score = 115 bits (289), Expect = 8e-25 Identities = 59/75 (78%), Positives = 65/75 (86%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQEAPAGGG 183 GISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+Q AP GG Sbjct: 68 GISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQQAAPTTGG 127
Query: 184 NFGKPQPVGGFQGPR 228 F KPQ GG+QG R Sbjct: 128 GFFKPQG-GGYQGNR 141
>tr|A9P1Y2|A9P1Y2_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=4 SV=1 Length = 89
Score = 109 bits (272), Expect = 8e-23 Identities = 58/74 (78%), Positives = 62/74 (83%), Gaps = 1/74 (1%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQ-EAPAGG 180 GISLKLQEEERERRMDFVPEESAIKT++IEVDKETMD+L L M LPGVVKQ + PAGG Sbjct: 11 GISLKLQEEERERRMDFVPEESAIKTEVIEVDKETMDMLASLGMSDLPGVVKQADPPAGG 70
Query: 181 GNFGKPQPVGGFQG 222 G F KP GGFQG Sbjct: 71 GGFIKP---GGFQG 81
>tr|A9NK75|A9NK75_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 146
Score = 109 bits (272), Expect = 8e-23 Identities = 58/74 (78%), Positives = 62/74 (83%), Gaps = 1/74 (1%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQ-EAPAGG 180 GISLKLQEEERERRMDFVPEESAIKT++IEVDKETMD+L L M LPGVVKQ + PAGG Sbjct: 68 GISLKLQEEERERRMDFVPEESAIKTEVIEVDKETMDMLASLGMSDLPGVVKQADPPAGG 127
Query: 181 GNFGKPQPVGGFQG 222 G F KP GGFQG Sbjct: 128 GGFIKP---GGFQG 138
>tr|A9NP61|A9NP61_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 145
Score = 101 bits (251), Expect = 2e-20 Identities = 52/73 (71%), Positives = 57/73 (78%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQEAPAGGG 183 GISLKLQEEERERRMDFVP+ESAIK D+IEVDKETMD+L L M LPGVVKQ P GG Sbjct: 68 GISLKLQEEERERRMDFVPDESAIKIDVIEVDKETMDMLASLGMADLPGVVKQADPPAGG 127
Query: 184 NFGKPQPVGGFQG 222 F +P GG+ G Sbjct: 128 GFMRPG--GGYLG 138
>tr|A9SGG5|A9SGG5_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_38208 PE=4 SV=1 Length = 122
Score = 95.9 bits (237), Expect = 9e-19 Identities = 47/55 (85%), Positives = 52/55 (94%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQEA 168 GISLKLQEEERERRMDFVPEESAIKTD+IEVD+ET++LL HLNM QLPGVV+Q A Sbjct: 68 GISLKLQEEERERRMDFVPEESAIKTDVIEVDRETIELLAHLNMPQLPGVVQQAA 122
>tr|Q6RJY3|Q6RJY3_CAPAN 40S ribosomal protein S17 OS=Capsicum annuum PE=2 SV=1 Length = 145
Score = 92.4 bits (228), Expect = 1e-17 Identities = 49/76 (64%), Positives = 55/76 (72%), Gaps = 12/76 (15%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQEAP---- 171 GISLKLQEEERERRMDFVP+ESAIKTD+IEVDKET+D+L L M +LPGVVKQ A Sbjct: 68 GISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSALGMAELPGVVKQAAEPQAV 127
Query: 172 --------AGGGNFGK 195 G G FG+ Sbjct: 128 AATLPTFGRGAGGFGR 143
>tr|Q3HRX4|Q3HRX4_SOLTU 40S ribosomal protein S17-like protein OS=Solanum tuberosum PE=2 SV=1 Length = 144
Score = 92.4 bits (228), Expect = 1e-17 Identities = 49/75 (65%), Positives = 54/75 (72%), Gaps = 11/75 (14%) Frame = +1
Query: 4 GISLKLQEEERERRMDFVPEESAIKTDIIEVDKETMDLLQHLNMGQLPGVVKQEAP---- 171 GISLKLQEEERERRMDFVP+ESAIKTD+IEVDKET+D+L L M LPGVVKQ A Sbjct: 68 GISLKLQEEERERRMDFVPDESAIKTDLIEVDKETLDMLSSLGMSDLPGVVKQAAEPQAV 127
Query: 172 -------AGGGNFGK 195 G G FG+ Sbjct: 128 AALPTFGRGAGGFGR 142
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