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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944117
Clone id YMU02A01NGRL0005_A12
Library
Length 328
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_A12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTAGCCAAAATTCTGAGGGGCCAAACAATGAAGATCTCGTGAAGGACACTGAAGCACTCT
CTTTGGAAAAGATGCTCTATGATGGTACATGAATATACCATCATCCTGGGGGAGGGCTAA
TCATAGCCGTTTTTTGGCTCTCCATAATTGCCATAGTAAGTTACTCCACCCTACCAAATT
CACCCAAACGTTATGGCTATCCCTACCATTTCACTGTACATAGGCGTGTGTGAGTTAGGG
GACTTTTCCCATATCTTCTTAAAAACCCTCAGCTTGCTAGTCACTGGGCTAGTTGAGCCA
AAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5R5P4
Definition sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii
Align length 31
Score (bit) 30.0
E-value 3.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944117|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A12, 5'
         (299 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii GN=...    30   3.8  
sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus GN=...    30   3.8  
sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens GN=...    30   3.8  
sp|A4SML2|DCD_AERS4 Deoxycytidine triphosphate deaminase OS=Aero...    30   3.8  
sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus ...    29   6.5  
sp|A9MKX9|DCD_SALAR Deoxycytidine triphosphate deaminase OS=Salm...    29   6.5  
sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris...    29   8.4  
sp|P63905|DCD_SALTY Deoxycytidine triphosphate deaminase OS=Salm...    29   8.4  
sp|P63906|DCD_SALTI Deoxycytidine triphosphate deaminase OS=Salm...    29   8.4  
sp|A9N7M1|DCD_SALPB Deoxycytidine triphosphate deaminase OS=Salm...    29   8.4  
sp|Q5PDX5|DCD_SALPA Deoxycytidine triphosphate deaminase OS=Salm...    29   8.4  
sp|Q57MN2|DCD_SALCH Deoxycytidine triphosphate deaminase OS=Salm...    29   8.4  

>sp|Q5R5P4|RBM47_PONAB RNA-binding protein 47 OS=Pongo abelii
           GN=RBM47 PE=2 SV=2
          Length = 593

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 127 PFFGSP*LP**VTPPYQIHPNVMAIPTISLY 219
           PF G P     +TP Y + PNV  IPT  +Y
Sbjct: 512 PFQGRP-----ITPVYTVAPNVQRIPTAGIY 537


>sp|Q91WT8|RBM47_MOUSE RNA-binding protein 47 OS=Mus musculus
           GN=Rbm47 PE=2 SV=1
          Length = 590

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 127 PFFGSP*LP**VTPPYQIHPNVMAIPTISLY 219
           PF G P     +TP Y + PNV  IPT  +Y
Sbjct: 512 PFQGRP-----ITPVYTVAPNVQRIPTAGIY 537


>sp|A0AV96|RBM47_HUMAN RNA-binding protein 47 OS=Homo sapiens
           GN=RBM47 PE=2 SV=1
          Length = 593

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 127 PFFGSP*LP**VTPPYQIHPNVMAIPTISLY 219
           PF G P     +TP Y + PNV  IPT  +Y
Sbjct: 512 PFQGRP-----ITPVYTVAPNVQRIPTAGIY 537


>sp|A4SML2|DCD_AERS4 Deoxycytidine triphosphate deaminase
           OS=Aeromonas salmonicida (strain A449) GN=dcd PE=3 SV=1
          Length = 193

 Score = 30.0 bits (66), Expect = 3.8
 Identities = 25/72 (34%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 18  GPNNEDLVKDTEALSLEKMLYDGT*IYHHPGGGLIIAVFWLSIIA---IVSYSTLPNSPK 188
           GPN+E        +S E  + DG   Y HP G L +AV + S+     IV +    +S  
Sbjct: 56  GPNSEMADAIDRVMSDEIHIPDGEAFYLHP-GQLALAVTYESVTLPADIVGWLDGRSSLA 114

Query: 189 RYGYPYHFTVHR 224
           R G   H T HR
Sbjct: 115 RLGLMVHVTAHR 126


>sp|Q66H68|RBM47_RAT RNA-binding protein 47 OS=Rattus norvegicus
           GN=Rbm47 PE=2 SV=1
          Length = 590

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 127 PFFGSP*LP**VTPPYQIHPNVMAIPTISLY 219
           PF G P     +TP Y + PNV  IPT  +Y
Sbjct: 512 PFQGRP-----ITPVYTVAPNVPRIPTAGIY 537


>sp|A9MKX9|DCD_SALAR Deoxycytidine triphosphate deaminase
           OS=Salmonella arizonae (strain ATCC BAA-731 / CDC346-86
           / RSK2980) GN=dcd PE=3 SV=1
          Length = 193

 Score = 29.3 bits (64), Expect = 6.5
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 18  GPNNEDLVKDTEALSLEKMLYDGT*IYHHPGGGLIIAVFWLSIIA---IVSYSTLPNSPK 188
           GP +E        +S E +L DG   Y HP G L +AV + S+     +V +    +S  
Sbjct: 56  GPKDEVSAALDRVMSDEIVLPDGEAFYLHP-GELALAVTYESVTLPPDLVGWLDGRSSLA 114

Query: 189 RYGYPYHFTVHR 224
           R G   H T HR
Sbjct: 115 RLGLMVHVTAHR 126


>sp|Q9XSR3|RBM47_CANFA RNA-binding protein 47 OS=Canis familiaris
           GN=RBM47 PE=2 SV=1
          Length = 592

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/31 (45%), Positives = 16/31 (51%)
 Frame = +1

Query: 127 PFFGSP*LP**VTPPYQIHPNVMAIPTISLY 219
           PF G P     +TP Y + PNV  IP   LY
Sbjct: 512 PFQGRP-----ITPVYTVAPNVQRIPAAGLY 537


>sp|P63905|DCD_SALTY Deoxycytidine triphosphate deaminase
           OS=Salmonella typhimurium GN=dcd PE=3 SV=1
          Length = 193

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 18  GPNNEDLVKDTEALSLEKMLYDGT*IYHHPGGGLIIAVFWLSIIA---IVSYSTLPNSPK 188
           GP +E        +S E +L DG   Y HP G L +AV + S+     +V +    +S  
Sbjct: 56  GPKDEVSAALDRVMSDEIVLPDGEAFYLHP-GELALAVTFESVTLPPDLVGWLDGRSSLA 114

Query: 189 RYGYPYHFTVHR 224
           R G   H T HR
Sbjct: 115 RLGLMVHVTAHR 126


>sp|P63906|DCD_SALTI Deoxycytidine triphosphate deaminase
           OS=Salmonella typhi GN=dcd PE=3 SV=1
          Length = 193

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 18  GPNNEDLVKDTEALSLEKMLYDGT*IYHHPGGGLIIAVFWLSIIA---IVSYSTLPNSPK 188
           GP +E        +S E +L DG   Y HP G L +AV + S+     +V +    +S  
Sbjct: 56  GPKDEVSAALDRVMSDEIVLPDGEAFYLHP-GELALAVTFESVTLPPDLVGWLDGRSSLA 114

Query: 189 RYGYPYHFTVHR 224
           R G   H T HR
Sbjct: 115 RLGLMVHVTAHR 126


>sp|A9N7M1|DCD_SALPB Deoxycytidine triphosphate deaminase
           OS=Salmonella paratyphi B (strain ATCC BAA-1250 / SPB7)
           GN=dcd PE=3 SV=1
          Length = 193

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 24/72 (33%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = +3

Query: 18  GPNNEDLVKDTEALSLEKMLYDGT*IYHHPGGGLIIAVFWLSIIA---IVSYSTLPNSPK 188
           GP +E        +S E +L DG   Y HP G L +AV + S+     +V +    +S  
Sbjct: 56  GPKDEVSAALDRVMSDEIVLPDGEAFYLHP-GELALAVTFESVTLPPDLVGWLDGRSSLA 114

Query: 189 RYGYPYHFTVHR 224
           R G   H T HR
Sbjct: 115 RLGLMVHVTAHR 126
tr_hit_id Q970S2
Definition tr|Q970S2|Q970S2_SULTO Putative uncharacterized protein ST1530 OS=Sulfolobus tokodaii
Align length 47
Score (bit) 35.4
E-value 1.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944117|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A12, 5'
         (299 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q970S2|Q970S2_SULTO Putative uncharacterized protein ST1530 O...    35   1.4  

>tr|Q970S2|Q970S2_SULTO Putative uncharacterized protein ST1530
           OS=Sulfolobus tokodaii GN=ST1530 PE=4 SV=1
          Length = 324

 Score = 35.4 bits (80), Expect = 1.4
 Identities = 17/47 (36%), Positives = 29/47 (61%)
 Frame = -1

Query: 281 TSKLRVFKKIWEKSPNSHTPMYSEMVGIAITFG*IW*GGVTYYGNYG 141
           +S   +FK + E+S   +  +YS +VGIA+  G +  G +T+Y +YG
Sbjct: 255 SSNTLIFKIVGERSQGKNLGVYSTVVGIALFLGSLLSGYITHYLSYG 301