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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944119
Clone id YMU02A01NGRL0005_A14
Library
Length 552
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_A14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GAGGGAATCACGGTGGTACTTTGTTCAGAGCTTATCCTGGTCCATGGCAGGTACTTCGAA
GAATGAACGATGGCCTTGTTTGTGTTCATGAACAGGAGACAATGCCAACCCTAAAAGAGG
TGGCACTAAACATTTTGATGCGGGTGTGACACAGGGTTTGCCATCACTTGATGTAAGTTC
AAGTGGATGAGTCTCTTGATCCCATGAGCCAATGTGTAATTTTAATCTGTGATTGACTGA
GGTTTTCAATTTTATCTGAAGAGCTCCGAAGAGCTTTGTCCTTACCTGGTTGAACTGGTT
CACAGCACAAGGTACAAAGTTTCATGTAAGATCTCAAAAGCTCTTATCAAGGAAAATACC
AACTAGGGCGTGTGCCGTGAGCCGGAAACATCACTTGTAACCTGAGCCGGTACTGCGGTT
ACAATTTCCTGCTATAAAGAAGGGCTTCATGTAATTTGGGGTTCCTGATGTATTGAACTC
ATTTGTAGCCAGTACACAATCTTATACCGCTCTATTATTGATGGAAAAAATGTTTGCGAT
GTCCAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P49397
Definition sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa subsp. japonica
Align length 84
Score (bit) 31.2
E-value 3.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944119|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A14, 5'
         (552 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa s...    31   3.5  
sp|Q1E6Q0|YD156_COCIM WD repeat-containing protein CIMG_01763 OS...    31   3.5  
sp|P04654|CASA2_SHEEP Alpha-S2-casein OS=Ovis aries GN=CSN1S2 PE...    30   7.8  

>sp|P49397|RS3A_ORYSJ 40S ribosomal protein S3a OS=Oryza sativa
           subsp. japonica GN=RPS3A PE=2 SV=2
          Length = 262

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 18/84 (21%), Positives = 37/84 (44%)
 Frame = -3

Query: 295 VQPGKDKALRSSSDKIENLSQSQIKITHWLMGSRDSST*TYIK*WQTLCHTRIKMFSATS 116
           +Q  +D+A R    + E++    +    W M        + +K WQTL    + + +   
Sbjct: 73  LQNDEDQAYRKIRLRAEDVQGKNVLTNFWGMSFTTDKLRSLVKKWQTLIEAHVDVKTTDG 132

Query: 115 FRVGIVSCS*TQTRPSFILRSTCH 44
           + + +     T+ RP+ + R TC+
Sbjct: 133 YMLRLFCIGFTKRRPNQVKR-TCY 155


>sp|Q1E6Q0|YD156_COCIM WD repeat-containing protein CIMG_01763
           OS=Coccidioides immitis GN=CIMG_01763 PE=3 SV=1
          Length = 525

 Score = 31.2 bits (69), Expect = 3.5
 Identities = 16/47 (34%), Positives = 22/47 (46%)
 Frame = -1

Query: 222 KLHIGSWDQETHPLELTSSDGKPCVTPASKCLVPPLLGLALSPVHEH 82
           KL+ GS+D     L+L  S       PAS     PL G+ ++P   H
Sbjct: 258 KLYSGSYDSSIRALDLEKSVATEAYAPASSSDDEPLSGIDMAPTDPH 304


>sp|P04654|CASA2_SHEEP Alpha-S2-casein OS=Ovis aries GN=CSN1S2 PE=2
           SV=1
          Length = 223

 Score = 30.0 bits (66), Expect = 7.8
 Identities = 15/39 (38%), Positives = 24/39 (61%), Gaps = 3/39 (7%)
 Frame = -3

Query: 322 KLCTLCCEPVQPGKDK---ALRSSSDKIENLSQSQIKIT 215
           KLCT  CE V    D+   ++RSSS++   ++  ++KIT
Sbjct: 50  KLCTTSCEEVVRNADEEEYSIRSSSEESAEVAPEEVKIT 88
tr_hit_id A9P1J3
Definition tr|A9P1J3|A9P1J3_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 45
Score (bit) 75.9
E-value 1.0e-12
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944119|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_A14, 5'
         (552 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9P1J3|A9P1J3_PICSI Putative uncharacterized protein OS=Picea...    76   1e-12
tr|Q94F50|Q94F50_ARATH AT5g48790/K24G6_12 OS=Arabidopsis thalian...    72   2e-11
tr|A7QHE7|A7QHE7_VITVI Chromosome chr2 scaffold_97, whole genome...    70   6e-11
tr|Q7XA29|Q7XA29_SOLBU Putative uncharacterized protein OS=Solan...    68   3e-10
tr|Q0ILF9|Q0ILF9_SOLBU Putative uncharacterized protein OS=Solan...    68   3e-10
tr|B8AH08|B8AH08_ORYSI Putative uncharacterized protein OS=Oryza...    68   3e-10
tr|A3A2R7|A3A2R7_ORYSJ Putative uncharacterized protein OS=Oryza...    68   3e-10
tr|B6UHF9|B6UHF9_MAIZE Putative uncharacterized protein OS=Zea m...    65   3e-09
tr|A9S8P0|A9S8P0_PHYPA Predicted protein OS=Physcomitrella paten...    62   3e-08
tr|Q8LFG2|Q8LFG2_ARATH Putative uncharacterized protein OS=Arabi...    45   0.002
tr|Q8H0W0|Q8H0W0_ARATH Putative uncharacterized protein At1g7306...    45   0.002
tr|A7QFZ7|A7QFZ7_VITVI Chromosome chr9 scaffold_90, whole genome...    44   0.004
tr|A4RRJ7|A4RRJ7_OSTLU Predicted protein OS=Ostreococcus lucimar...    44   0.004
tr|Q01BY6|Q01BY6_OSTTA Homology to unknown gene OS=Ostreococcus ...    43   0.013
tr|Q01G24|Q01G24_OSTTA Homology to unknown gene (Fragment) OS=Os...    42   0.016
tr|Q6ZGM0|Q6ZGM0_ORYSJ Os02g0117100 protein OS=Oryza sativa subs...    41   0.048
tr|B8AGH9|B8AGH9_ORYSI Putative uncharacterized protein OS=Oryza...    41   0.048
tr|B6U605|B6U605_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.082
tr|B4FQ86|B4FQ86_MAIZE Putative uncharacterized protein OS=Zea m...    40   0.082
tr|A9T9V2|A9T9V2_PHYPA Predicted protein OS=Physcomitrella paten...    39   0.14 
tr|A8IRG9|A8IRG9_CHLRE Predicted protein OS=Chlamydomonas reinha...    39   0.24 
tr|A4RV55|A4RV55_OSTLU Predicted protein (Fragment) OS=Ostreococ...    38   0.41 
tr|B7GAR8|B7GAR8_PHATR Predicted protein OS=Phaeodactylum tricor...    35   2.0  
tr|A8XXV4|A8XXV4_CAEBR CBR-GLY-18 protein OS=Caenorhabditis brig...    35   2.6  
tr|B6TAC5|B6TAC5_MAIZE 40S ribosomal protein S3a OS=Zea mays PE=...    35   3.4  
tr|Q7NGC3|Q7NGC3_GLOVI Gll3249 protein OS=Gloeobacter violaceus ...    34   5.9  
tr|B6UG10|B6UG10_MAIZE 40S ribosomal protein S3a OS=Zea mays PE=...    34   5.9  
tr|B6TAQ5|B6TAQ5_MAIZE 40S ribosomal protein S3a OS=Zea mays PE=...    34   5.9  
tr|B6T834|B6T834_MAIZE 40S ribosomal protein S3a OS=Zea mays PE=...    34   5.9  
tr|B4FAV3|B4FAV3_MAIZE Putative uncharacterized protein OS=Zea m...    34   5.9  

>tr|A9P1J3|A9P1J3_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 337

 Score = 75.9 bits (185), Expect = 1e-12
 Identities = 33/45 (73%), Positives = 40/45 (88%)
 Frame = +3

Query: 3   GNHGGTLFRAYPGPWQVLRRMNDGLVCVHEQETMPTLKEVALNIL 137
           G  GGTLFR+YPGPWQVLR++ D  VC+H+QETMP+LKEVAL+IL
Sbjct: 290 GRVGGTLFRSYPGPWQVLRKVGDKHVCIHQQETMPSLKEVALSIL 334


>tr|Q94F50|Q94F50_ARATH AT5g48790/K24G6_12 OS=Arabidopsis thaliana
           GN=At5g48790 PE=2 SV=1
          Length = 316

 Score = 72.0 bits (175), Expect = 2e-11
 Identities = 31/45 (68%), Positives = 37/45 (82%)
 Frame = +3

Query: 3   GNHGGTLFRAYPGPWQVLRRMNDGLVCVHEQETMPTLKEVALNIL 137
           G  GG LFR YPGPWQVLRR  +  +CVH+QE+MP+LKEVAL+IL
Sbjct: 269 GQKGGVLFRCYPGPWQVLRRTRNKYICVHQQESMPSLKEVALDIL 313


>tr|A7QHE7|A7QHE7_VITVI Chromosome chr2 scaffold_97, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00038743001
           PE=4 SV=1
          Length = 322

 Score = 70.5 bits (171), Expect = 6e-11
 Identities = 29/45 (64%), Positives = 38/45 (84%)
 Frame = +3

Query: 3   GNHGGTLFRAYPGPWQVLRRMNDGLVCVHEQETMPTLKEVALNIL 137
           G  GGTLFR YPGPW+VLR++ +  +C+H+QE MP+LKEVAL+IL
Sbjct: 275 GRKGGTLFRCYPGPWKVLRKVRNEYICLHQQEVMPSLKEVALDIL 319


>tr|Q7XA29|Q7XA29_SOLBU Putative uncharacterized protein OS=Solanum
           bulbocastanum GN=SBB1_14t00013 PE=4 SV=2
          Length = 338

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 28/45 (62%), Positives = 37/45 (82%)
 Frame = +3

Query: 3   GNHGGTLFRAYPGPWQVLRRMNDGLVCVHEQETMPTLKEVALNIL 137
           G +GG LFR YPGPW+V RR+    +C+H+QE+MP+LKEVAL+IL
Sbjct: 291 GRNGGVLFRCYPGPWKVFRRVGSTNICLHQQESMPSLKEVALDIL 335


>tr|Q0ILF9|Q0ILF9_SOLBU Putative uncharacterized protein OS=Solanum
           bulbocastanum GN=SBB1_21t00009 PE=4 SV=1
          Length = 338

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 28/45 (62%), Positives = 37/45 (82%)
 Frame = +3

Query: 3   GNHGGTLFRAYPGPWQVLRRMNDGLVCVHEQETMPTLKEVALNIL 137
           G +GG LFR YPGPW+V RR+    +C+H+QE+MP+LKEVAL+IL
Sbjct: 291 GRNGGVLFRCYPGPWKVFRRVGSTNICLHQQESMPSLKEVALDIL 335


>tr|B8AH08|B8AH08_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_05707 PE=4 SV=1
          Length = 338

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 30/45 (66%), Positives = 35/45 (77%)
 Frame = +3

Query: 3   GNHGGTLFRAYPGPWQVLRRMNDGLVCVHEQETMPTLKEVALNIL 137
           G  GGTLFR YPGPW+VLR +     C+HEQE MP+LKEVAL+IL
Sbjct: 291 GLKGGTLFRCYPGPWKVLRNIGGSFFCLHEQEEMPSLKEVALDIL 335


>tr|A3A2R7|A3A2R7_ORYSJ Putative uncharacterized protein OS=Oryza
           sativa subsp. japonica GN=OsJ_005089 PE=4 SV=1
          Length = 338

 Score = 68.2 bits (165), Expect = 3e-10
 Identities = 30/45 (66%), Positives = 35/45 (77%)
 Frame = +3

Query: 3   GNHGGTLFRAYPGPWQVLRRMNDGLVCVHEQETMPTLKEVALNIL 137
           G  GGTLFR YPGPW+VLR +     C+HEQE MP+LKEVAL+IL
Sbjct: 291 GLKGGTLFRCYPGPWKVLRNIGGSFFCLHEQEEMPSLKEVALDIL 335


>tr|B6UHF9|B6UHF9_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 310

 Score = 64.7 bits (156), Expect = 3e-09
 Identities = 31/49 (63%), Positives = 38/49 (77%), Gaps = 1/49 (2%)
 Frame = +3

Query: 3   GNHGGTLFRAYPGPWQVLRRMNDG-LVCVHEQETMPTLKEVALNILMRV 146
           G  GGTLFR YP PW+VLR+ + G  VC+H+QE MP+LKEVAL+IL  V
Sbjct: 262 GAKGGTLFRCYPEPWKVLRKASSGSYVCLHQQEEMPSLKEVALDILPSV 310


>tr|A9S8P0|A9S8P0_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_125880 PE=4 SV=1
          Length = 280

 Score = 61.6 bits (148), Expect = 3e-08
 Identities = 30/46 (65%), Positives = 35/46 (76%), Gaps = 1/46 (2%)
 Frame = +3

Query: 3   GNHGGTLFRAYPGPWQVLRRMND-GLVCVHEQETMPTLKEVALNIL 137
           G   G LFR YPGPWQVL+R+ D   V +HEQ +MP+LKEVALNIL
Sbjct: 232 GRSRGVLFRMYPGPWQVLQRVGDHKFVLLHEQASMPSLKEVALNIL 277


>tr|Q8LFG2|Q8LFG2_ARATH Putative uncharacterized protein
           OS=Arabidopsis thaliana PE=2 SV=1
          Length = 358

 Score = 45.4 bits (106), Expect = 0.002
 Identities = 22/45 (48%), Positives = 26/45 (57%), Gaps = 1/45 (2%)
 Frame = +3

Query: 6   NHGGTLFRAYPGPWQVLRRMNDG-LVCVHEQETMPTLKEVALNIL 137
           N+ G LFR YPGPWQV+ +  DG   CV E  T  TL E    +L
Sbjct: 274 NYNGALFRQYPGPWQVMLKQTDGSFACVAESPTRFTLGETKEELL 318