DK944122 |
Clone id |
YMU02A01NGRL0005_A17 |
Library |
YMU02 |
Length |
541 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_A17. 5' end sequence. |
Accession |
DK944122 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL507Contig1 |
Sequence |
CCGCAGGAAACCCTAGCCCCTGCTGGTGCTGTGACGGATAAGACATGGAAAGAACTTGTC CTTGAATCTGAGGTCCCAGTGCTTGTGGACTTCTGGGCTCCTTGGTGTGGACCCTGCCGT ATGATTGCTCCTTTGGTGGATGAGCTTGCTGAGAAGTACAAAGGCAGAGTGAGGCGCTTG AAGCTCAACACAGATGAGAGCCCCTCAACAGCAACCGAGTATGGTATCCGAAGTATTCCA ACAGTGATGATCTTTAAGGGAGGGGCAAAGAAAGACACTATTATCGGTGCTGTGCCAATG GCGGCTCTTGTTACAGCTATTGAAAAATACTTGGACAGATAAGTGACATGCATTGGTAGG TTCCAATCTCATGGTTTGGGGGCTCGCAAGCCCATGCTCATACTTGAAAATGGCCATGGG ATAGTAGCGATCCTTTTGTAAAGTGCAACTGTAACTTAGTGTTTTCTTTCATGTGTTCCT CTGTATTTGATTCTACTAATCATTCTGCAATTCATGTAAAAAAAAAAAAAAAAAAAAAAA A |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P23400 |
Definition |
sp|P23400|TRXM_CHLRE Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii |
Align length |
107 |
Score (bit) |
141.0 |
E-value |
2.0e-33 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944122|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_A17, 5' (517 letters)
Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
sp|P23400|TRXM_CHLRE Thioredoxin M-type, chloroplastic OS=Chlamy... 141 2e-33 sp|P48384|TRXM_PEA Thioredoxin M-type, chloroplastic OS=Pisum sa... 136 7e-32 sp|Q9SEU8|TRXM2_ARATH Thioredoxin M-type 2, chloroplastic OS=Ara... 134 3e-31 sp|P0A4L1|THIO1_ANASP Thioredoxin-1 OS=Anabaena sp. (strain PCC ... 132 7e-31 sp|P0A4L2|THIO1_ANASO Thioredoxin-1 OS=Anabaena sp. (strain PCC ... 132 7e-31 sp|P52231|THIO_SYNY3 Thioredoxin OS=Synechocystis sp. (strain PC... 132 1e-30 sp|Q9XGS0|TRXM_BRANA Thioredoxin M-type, chloroplastic OS=Brassi... 132 1e-30 sp|P12243|THIO1_SYNE7 Thioredoxin-1 OS=Synechococcus elongatus (... 130 3e-30 sp|P07591|TRXM_SPIOL Thioredoxin M-type, chloroplastic OS=Spinac... 129 1e-29 sp|O48737|TRXM1_ARATH Thioredoxin M-type 1, chloroplastic OS=Ara... 128 1e-29 sp|Q41864|TRXM_MAIZE Thioredoxin M-type, chloroplastic OS=Zea ma... 128 2e-29 sp|Q9ZP20|TRXM_ORYSJ Thioredoxin M-type, chloroplastic OS=Oryza ... 127 4e-29 sp|Q9SEU6|TRXM4_ARATH Thioredoxin M-type 4, chloroplastic OS=Ara... 125 9e-29 sp|P50254|THIO_PORYE Thioredoxin OS=Porphyra yezoensis GN=trxA P... 125 9e-29 sp|P37395|THIO_CYACA Thioredoxin OS=Cyanidium caldarium GN=trxA ... 124 2e-28 sp|P51225|THIO_PORPU Thioredoxin OS=Porphyra purpurea GN=trxA PE... 122 8e-28 sp|Q9ZP21|TRXM_WHEAT Thioredoxin M-type, chloroplastic OS=Tritic... 122 1e-27 sp|P50338|THIO_GRIPA Thioredoxin OS=Griffithsia pacifica GN=trxA... 117 2e-26 sp|O22022|THIO_CYAME Thioredoxin OS=Cyanidioschyzon merolae GN=t... 109 7e-24 sp|Q4UNK3|THIO_RICFE Thioredoxin OS=Rickettsia felis GN=trxA PE=... 107 3e-23 sp|Q92JR5|THIO_RICCN Thioredoxin OS=Rickettsia conorii GN=trxA P... 106 7e-23 sp|Q9ZEE0|THIO_RICPR Thioredoxin OS=Rickettsia prowazekii GN=trx... 104 3e-22 sp|Q68Y00|THIO_RICTY Thioredoxin OS=Rickettsia typhi GN=trxA PE=... 103 6e-22 sp|P10472|THIO_CHLLT Thioredoxin OS=Chlorobium limicola f.sp. th... 99 9e-21 sp|P52230|THIO_STRCO Thioredoxin OS=Streptomyces coelicolor GN=t... 99 1e-20 sp|Q8KE49|THIO2_CHLTE Thioredoxin-2 OS=Chlorobium tepidum GN=trx... 99 1e-20 sp|P33791|THIO_STRAU Thioredoxin (Fragment) OS=Streptomyces aure... 99 2e-20 sp|Q49WR2|THIO_STAS1 Thioredoxin OS=Staphylococcus saprophyticus... 97 3e-20 sp|P0A0K5|THIO_STAAW Thioredoxin OS=Staphylococcus aureus (strai... 97 3e-20 sp|P0A0K6|THIO_STAAU Thioredoxin OS=Staphylococcus aureus GN=trx... 97 3e-20
>sp|P23400|TRXM_CHLRE Thioredoxin M-type, chloroplastic OS=Chlamydomonas reinhardtii GN=TRXM PE=1 SV=3 Length = 140
Score = 141 bits (356), Expect = 2e-33 Identities = 65/107 (60%), Positives = 82/107 (76%) Frame = +1
Query: 16 APAGAVTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLKLNTD 195 A AGAV D T+K DFWAPWCGPCR+IAP+VDE+A +YK +++ +KLNTD Sbjct: 34 AEAGAVNDDTFKNVVLESSVPVLVDFWAPWCGPCRIIAPVVDEIAGEYKDKLKCVKLNTD 93
Query: 196 ESPSTATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYLD 336 ESP+ A+EYGIRSIPT+M+FKGG K +TIIGAVP A +V +EKYL+ Sbjct: 94 ESPNVASEYGIRSIPTIMVFKGGKKCETIIGAVPKATIVQTVEKYLN 140
>sp|P48384|TRXM_PEA Thioredoxin M-type, chloroplastic OS=Pisum sativum PE=2 SV=1 Length = 172
Score = 136 bits (342), Expect = 7e-32 Identities = 60/110 (54%), Positives = 78/110 (70%) Frame = +1
Query: 4 QETLAPAGAVTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLK 183 +E + V D +W DFWAPWCGPCRMIAP++DELA++Y G+++ K Sbjct: 63 REAVNEVQVVNDSSWDELVIGSETPVLVDFWAPWCGPCRMIAPIIDELAKEYAGKIKCYK 122
Query: 184 LNTDESPSTATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYL 333 LNTDESP+TAT+YGIRSIPTV+ FK G +KD++IGAVP A L +EKY+ Sbjct: 123 LNTDESPNTATKYGIRSIPTVLFFKNGERKDSVIGAVPKATLSEKVEKYI 172
>sp|Q9SEU8|TRXM2_ARATH Thioredoxin M-type 2, chloroplastic OS=Arabidopsis thaliana GN=At4g03520 PE=1 SV=2 Length = 186
Score = 134 bits (336), Expect = 3e-31 Identities = 60/110 (54%), Positives = 76/110 (69%) Frame = +1
Query: 4 QETLAPAGAVTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLK 183 QET V D TW DFWAPWCGPC+MI PLV++LA+ Y G+++ K Sbjct: 76 QETTTDIQVVNDSTWDSLVLKATGPVVVDFWAPWCGPCKMIDPLVNDLAQHYTGKIKFYK 135
Query: 184 LNTDESPSTATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYL 333 LNTDESP+T +YG+RSIPT+MIF GG KKDTIIGAVP L ++++K+L Sbjct: 136 LNTDESPNTPGQYGVRSIPTIMIFVGGEKKDTIIGAVPKTTLTSSLDKFL 185
>sp|P0A4L1|THIO1_ANASP Thioredoxin-1 OS=Anabaena sp. (strain PCC 7120) GN=trxA PE=3 SV=2 Length = 107
Score = 132 bits (333), Expect = 7e-31 Identities = 57/107 (53%), Positives = 79/107 (73%) Frame = +1
Query: 13 LAPAGAVTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLKLNT 192 ++ A VTD T+K DFWAPWCGPCRM+AP+VDE+A++Y+G+++ +K+NT Sbjct: 1 MSAAAQVTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNT 60
Query: 193 DESPSTATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYL 333 DE+P A++YGIRSIPT+MIFKGG K D ++GAVP L +EK+L Sbjct: 61 DENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107
>sp|P0A4L2|THIO1_ANASO Thioredoxin-1 OS=Anabaena sp. (strain PCC 7119) GN=trxA PE=1 SV=2 Length = 107
Score = 132 bits (333), Expect = 7e-31 Identities = 57/107 (53%), Positives = 79/107 (73%) Frame = +1
Query: 13 LAPAGAVTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLKLNT 192 ++ A VTD T+K DFWAPWCGPCRM+AP+VDE+A++Y+G+++ +K+NT Sbjct: 1 MSAAAQVTDSTFKQEVLDSDVPVLVDFWAPWCGPCRMVAPVVDEIAQQYEGKIKVVKVNT 60
Query: 193 DESPSTATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYL 333 DE+P A++YGIRSIPT+MIFKGG K D ++GAVP L +EK+L Sbjct: 61 DENPQVASQYGIRSIPTLMIFKGGQKVDMVVGAVPKTTLSQTLEKHL 107
>sp|P52231|THIO_SYNY3 Thioredoxin OS=Synechocystis sp. (strain PCC 6803) GN=trxA PE=1 SV=3 Length = 107
Score = 132 bits (332), Expect = 1e-30 Identities = 56/101 (55%), Positives = 79/101 (78%) Frame = +1
Query: 31 VTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLKLNTDESPST 210 V+D ++K DFWAPWCGPCRM+AP+VDE++++Y+G+V+ +KLNTDE+P+T Sbjct: 7 VSDASFKEDVLDSELPVLVDFWAPWCGPCRMVAPVVDEISQQYEGKVKVVKLNTDENPNT 66
Query: 211 ATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYL 333 A++YGIRSIPT+MIFKGG + D ++GAVP L + +EKYL Sbjct: 67 ASQYGIRSIPTLMIFKGGQRVDMVVGAVPKTTLASTLEKYL 107
>sp|Q9XGS0|TRXM_BRANA Thioredoxin M-type, chloroplastic OS=Brassica napus PE=1 SV=1 Length = 177
Score = 132 bits (331), Expect = 1e-30 Identities = 59/110 (53%), Positives = 77/110 (70%) Frame = +1
Query: 4 QETLAPAGAVTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLK 183 Q+T V D TW+ DFWAPWCGPC+MI P+V+ELA++Y G+++ K Sbjct: 67 QDTATGIPMVNDSTWESLVLKADEPVVVDFWAPWCGPCKMIDPIVNELAQQYTGKIKFFK 126
Query: 184 LNTDESPSTATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYL 333 LNTD+SP+T +YG+RSIPT+MIF G KKDTIIGAVP L T+I+K+L Sbjct: 127 LNTDDSPATPGKYGVRSIPTIMIFVKGEKKDTIIGAVPKTTLATSIDKFL 176
>sp|P12243|THIO1_SYNE7 Thioredoxin-1 OS=Synechococcus elongatus (strain PCC 7942) GN=trxA PE=3 SV=2 Length = 107
Score = 130 bits (328), Expect = 3e-30 Identities = 57/107 (53%), Positives = 79/107 (73%) Frame = +1
Query: 13 LAPAGAVTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLKLNT 192 ++ A AVTD T+K DFWAPWCGPCRM+AP+VDE+A++Y +V+ +K+NT Sbjct: 1 MSVAAAVTDATFKQEVLESSIPVLVDFWAPWCGPCRMVAPVVDEIAQQYSDQVKVVKVNT 60
Query: 193 DESPSTATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYL 333 DE+PS A++YGIRSIPT+MIFK G + DT++GAVP L ++K+L Sbjct: 61 DENPSVASQYGIRSIPTLMIFKDGQRVDTVVGAVPKTTLANTLDKHL 107
>sp|P07591|TRXM_SPIOL Thioredoxin M-type, chloroplastic OS=Spinacia oleracea PE=1 SV=2 Length = 181
Score = 129 bits (323), Expect = 1e-29 Identities = 56/101 (55%), Positives = 73/101 (72%) Frame = +1
Query: 31 VTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLKLNTDESPST 210 V D +WK DFWAPWCGPC++IAP++DELA++Y G++ KLNTDE+P Sbjct: 79 VNDSSWKEFVLESEVPVMVDFWAPWCGPCKLIAPVIDELAKEYSGKIAVYKLNTDEAPGI 138
Query: 211 ATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYL 333 AT+Y IRSIPTV+ FK G +K++IIGAVP + L +IEKYL Sbjct: 139 ATQYNIRSIPTVLFFKNGERKESIIGAVPKSTLTDSIEKYL 179
>sp|O48737|TRXM1_ARATH Thioredoxin M-type 1, chloroplastic OS=Arabidopsis thaliana GN=At1g03680 PE=1 SV=1 Length = 179
Score = 128 bits (322), Expect = 1e-29 Identities = 60/110 (54%), Positives = 73/110 (66%) Frame = +1
Query: 4 QETLAPAGAVTDKTWKXXXXXXXXXXXXDFWAPWCGPCRMIAPLVDELAEKYKGRVRRLK 183 Q+T V D TW DFWAPWCGPC+MI P+V+ELA+KY G+ + K Sbjct: 70 QDTATGIPVVNDSTWDSLVLKADEPVFVDFWAPWCGPCKMIDPIVNELAQKYAGQFKFYK 129
Query: 184 LNTDESPSTATEYGIRSIPTVMIFKGGAKKDTIIGAVPMAALVTAIEKYL 333 LNTDESP+T +YG+RSIPT+MIF G KKDTIIGAV L T+I K+L Sbjct: 130 LNTDESPATPGQYGVRSIPTIMIFVNGEKKDTIIGAVSKDTLATSINKFL 179
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9RR41 |
Definition |
tr|A9RR41|A9RR41_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
110 |
Score (bit) |
155.0 |
E-value |
9.0e-37 |
Report |
|