NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944130
Clone id YMU02A01NGRL0005_B03
Library
Length 497
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_B03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GTCTGATATTGATGTATTCATCAGAGGTGGTATCGTGACTTATATTCTATTCATTCTACA
TAGTAGTATAAACGGAATCAATCTGTCTTAGGGTGATCAATTTCTATTTTTATTGGCAGT
ACTTCATTAATTACTATTTCATTAATGAAAAATTAGAAGGTAGATTAATCAATCTCGTCG
CTCACTCCTTTCGCCATCTAGAAAATATATTGACCATTCATTTGTGTTTTGGTACCCCTA
GAAATACTAGGTTGAATTTCTACTTCTCCGTAGAGATAACATGAGAATAAAATCTGTTGG
TATACTTCTAATAAAAATGACTCGGCGTCACTAAACCTTACAGAATAAATCTGGAAGAGA
TTCTTAGAATATTTCAGTACCGATTTGTCAAGATCATAGAACATCTCTTTGGTTGAACCG
CATCCCTCGGTTCATCAACTCGGTGAGATATATTTCCATAAGGGTTTTTTCCTGAATGAA
AACCATCACTAACGAAC
■■Homology search results ■■ -
sp_hit_id Q96BQ3
Definition sp|Q96BQ3|TRI43_HUMAN Tripartite motif-containing protein 43 OS=Homo sapiens
Align length 36
Score (bit) 30.0
E-value 6.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944130|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_B03, 5'
         (497 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q96BQ3|TRI43_HUMAN Tripartite motif-containing protein 43 OS=...    30   6.1  
sp|A6NMD1|T43L2_HUMAN Tripartite motif-containing protein 43-lik...    30   6.1  
sp|A6NCK2|T43L1_HUMAN Tripartite motif-containing protein 43-lik...    30   6.1  

>sp|Q96BQ3|TRI43_HUMAN Tripartite motif-containing protein 43
           OS=Homo sapiens GN=TRIM43 PE=2 SV=1
          Length = 446

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -1

Query: 473 RKKPLWKYISPS**TEGCGS---TKEMFYDLDKSVL 375
           RK  LW+++S     + CG+   TK+MF D+DKS+L
Sbjct: 78  RKASLWQFLSSE--KQICGTHRQTKKMFCDMDKSLL 111


>sp|A6NMD1|T43L2_HUMAN Tripartite motif-containing protein 43-like
           protein 2 OS=Homo sapiens PE=3 SV=2
          Length = 445

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -1

Query: 473 RKKPLWKYISPS**TEGCGS---TKEMFYDLDKSVL 375
           RK  LW+++S     + CG+   TK+MF D+DKS+L
Sbjct: 77  RKASLWQFLSSE--KQICGTHRQTKKMFCDMDKSLL 110


>sp|A6NCK2|T43L1_HUMAN Tripartite motif-containing protein 43-like
           protein 1 OS=Homo sapiens PE=3 SV=2
          Length = 449

 Score = 30.0 bits (66), Expect = 6.1
 Identities = 16/36 (44%), Positives = 24/36 (66%), Gaps = 3/36 (8%)
 Frame = -1

Query: 473 RKKPLWKYISPS**TEGCGS---TKEMFYDLDKSVL 375
           RK  LW+++S     + CG+   TK+MF D+DKS+L
Sbjct: 78  RKASLWQFLSSE--KQICGTHRQTKKMFCDMDKSLL 111
tr_hit_id B2TNK3
Definition tr|B2TNK3|B2TNK3_CLOBB Putative uncharacterized protein OS=Clostridium botulinum (strain Eklund 17B / type B)
Align length 65
Score (bit) 35.8
E-value 1.2
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944130|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_B03, 5'
         (497 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B2TNK3|B2TNK3_CLOBB Putative uncharacterized protein OS=Clost...    36   1.2  
tr|B7XK93|B7XK93_9MICR RNA polymerase II transcriptional regulat...    34   4.4  
tr|Q6WHX0|Q6WHX0_BPKV4 Putative uncharacterized protein OS=Vibri...    33   5.7  
tr|Q4Z1G1|Q4Z1G1_PLABE Putative uncharacterized protein (Fragmen...    33   5.7  

>tr|B2TNK3|B2TNK3_CLOBB Putative uncharacterized protein
           OS=Clostridium botulinum (strain Eklund 17B / type B)
           GN=CLL_A2622 PE=4 SV=1
          Length = 256

 Score = 35.8 bits (81), Expect = 1.2
 Identities = 21/65 (32%), Positives = 30/65 (46%)
 Frame = -1

Query: 398 YDLDKSVLKYSKNLFQIYSVRFSDAESFLLEVYQQILFSCYLYGEVEIQPSISRGTKTQM 219
           Y+  K +LKY  N+F  +    SD +++L   Y + L  CY YGE +    I  G     
Sbjct: 73  YETSKELLKYYDNVFSKHITNISDQDAWL--TYSKCLVCCY-YGEFDKAMQILNGINWSS 129

Query: 218 NGQYI 204
              YI
Sbjct: 130 KSPYI 134


>tr|B7XK93|B7XK93_9MICR RNA polymerase II transcriptional regulation
           mediator OS=Enterocytozoon bieneusi H348 GN=EBI_22311
           PE=4 SV=1
          Length = 172

 Score = 33.9 bits (76), Expect = 4.4
 Identities = 17/54 (31%), Positives = 31/54 (57%)
 Frame = -1

Query: 404 MFYDLDKSVLKYSKNLFQIYSVRFSDAESFLLEVYQQILFSCYLYGEVEIQPSI 243
           +FY+LD+   K++ NLF IY    ++ + +LL+ Y        ++G + + PSI
Sbjct: 66  IFYELDEEHQKHNANLFIIYKKEHNNGKIYLLKAYY------IMFGYIYVCPSI 113


>tr|Q6WHX0|Q6WHX0_BPKV4 Putative uncharacterized protein OS=Vibrio
           phage KVP40 GN=KVP40.0184 PE=4 SV=1
          Length = 106

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 16/41 (39%), Positives = 25/41 (60%)
 Frame = -1

Query: 422 CGSTKEMFYDLDKSVLKYSKNLFQIYSVRFSDAESFLLEVY 300
           CG   E F+  DK+VL+Y + L +  S RF + +S+  +VY
Sbjct: 62  CGGCIEDFWSSDKAVLEYGEYLQEHESSRFEEYKSYFPDVY 102


>tr|Q4Z1G1|Q4Z1G1_PLABE Putative uncharacterized protein (Fragment)
           OS=Plasmodium berghei GN=PB000384.01.0 PE=4 SV=1
          Length = 473

 Score = 33.5 bits (75), Expect = 5.7
 Identities = 17/64 (26%), Positives = 32/64 (50%)
 Frame = +3

Query: 75  ESICLRVINFYFYWQYFINYYFINEKLEGRLINLVAHSFRHLENILTIHLCFGTPRNTRL 254
           E ICL       Y +Y I++Y +  K    L+N +   F +LE   T+++ +   +  +L
Sbjct: 387 EEICLLEKELELYIKYNISFYRLFFKFIIPLVNKITTIFENLETFFTLYIKYKIKKKKKL 446

Query: 255 NFYF 266
            F++
Sbjct: 447 FFFY 450