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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944137
Clone id YMU02A01NGRL0005_B11
Library
Length 385
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_B11. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTTAACACATTGATTACACCAAAGGGGCAGAAGAAGGCTTATGTTAGGTTGACTGCTGAT
TATGATGCTTTGGATGTTGCGAACAAAATTGGAATTATCTAAGTGATTATCAATCACCGG
TAGTGGGGAATATGTAGCTTTAGGATTGGTTGAGATTTGAACCTCGAGCCTTCACTGACA
GACAGTTTGTACGACTTTGTTTTAAGCTGCTTCGGTTACCAATTTTGTCTCCGTGAAGCT
GCCTGAGTATATGCCCAATGGAATTGGATTTTATAATTACAGTCAGTCTTTTTTGCAGGC
TCTATGCCTTTATTTGTAAGATTTGCCACAAGAAATTGCTGTTTCTGTATTTGCCACAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P48162
Definition sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1 OS=Caenorhabditis elegans
Align length 29
Score (bit) 55.1
E-value 1.0e-07
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944137|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_B11, 5'
         (357 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1 OS=Caenorhabd...    55   1e-07
sp|P04456|RL25_YEAST 60S ribosomal protein L25 OS=Saccharomyces ...    52   7e-07
sp|P08792|RL25_PICJA 60S ribosomal protein L25 OS=Pichia jadinii...    52   9e-07
sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana ta...    52   9e-07
sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carot...    52   9e-07
sp|Q20647|R23A2_CAEEL 60S ribosomal protein L23a 2 OS=Caenorhabd...    52   9e-07
sp|Q9M3C3|R23A2_ARATH 60S ribosomal protein L23a-2 OS=Arabidopsi...    52   9e-07
sp|Q8LD46|R23A1_ARATH 60S ribosomal protein L23a-1 OS=Arabidopsi...    52   9e-07
sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria ...    52   1e-06
sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegi...    51   2e-06
sp|P62751|RL23A_MOUSE 60S ribosomal protein L23a OS=Mus musculus...    51   2e-06
sp|P62750|RL23A_HUMAN 60S ribosomal protein L23a OS=Homo sapiens...    51   2e-06
sp|Q24JY1|RL23A_BOVIN 60S ribosomal protein L23a OS=Bos taurus G...    51   2e-06
sp|P48045|RL25_KLULA 60S ribosomal protein L25 OS=Kluyveromyces ...    51   2e-06
sp|P41165|RL23A_TRYBB 60S ribosomal protein L23a OS=Trypanosoma ...    48   2e-05
sp|P51997|RL25_PUCGR 60S ribosomal protein L25 OS=Puccinia grami...    46   5e-05
sp|Q4JB42|RL23_SULAC 50S ribosomal protein L23P OS=Sulfolobus ac...    45   9e-05
sp|O74391|RL25B_SCHPO 60S ribosomal protein L25-B OS=Schizosacch...    45   1e-04
sp|Q10330|RL25A_SCHPO 60S ribosomal protein L25-A OS=Schizosacch...    45   1e-04
sp|Q54BQ3|RL23A_DICDI 60S ribosomal protein L23a OS=Dictyosteliu...    45   1e-04
sp|Q8ZW50|RL23_PYRAE 50S ribosomal protein L23P OS=Pyrobaculum a...    44   2e-04
sp|Q9YFM0|RL23_AERPE 50S ribosomal protein L23P OS=Aeropyrum per...    44   3e-04
sp|O28356|RL23_ARCFU 50S ribosomal protein L23P OS=Archaeoglobus...    43   4e-04
sp|O74095|RL23_PYRHO 50S ribosomal protein L23P OS=Pyrococcus ho...    42   0.001
sp|Q9V1T7|RL23_PYRAB 50S ribosomal protein L23P OS=Pyrococcus ab...    42   0.001
sp|P54016|RL23_METJA 50S ribosomal protein L23P OS=Methanocaldoc...    42   0.001
sp|A6UV66|RL23_META3 50S ribosomal protein L23P OS=Methanococcus...    42   0.001
sp|Q8U000|RL23_PYRFU 50S ribosomal protein L23P OS=Pyrococcus fu...    41   0.002
sp|Q5JDH1|RL23_PYRKO 50S ribosomal protein L23P OS=Pyrococcus ko...    40   0.003
sp|Q8TY92|RL23_METKA 50S ribosomal protein L23P OS=Methanopyrus ...    40   0.003

>sp|P48162|R23A1_CAEEL 60S ribosomal protein L23a 1
           OS=Caenorhabditis elegans GN=rpl-25.1 PE=2 SV=1
          Length = 147

 Score = 55.1 bits (131), Expect = 1e-07
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLITP  QKKAYVRLTADYDALDVANK
Sbjct: 115 VNTLITPLQQKKAYVRLTADYDALDVANK 143


>sp|P04456|RL25_YEAST 60S ribosomal protein L25 OS=Saccharomyces
           cerevisiae GN=RPL25 PE=1 SV=4
          Length = 142

 Score = 52.4 bits (124), Expect = 7e-07
 Identities = 23/29 (79%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTL+ P G KKAYVRLTADYDALD+AN+
Sbjct: 110 VNTLVRPNGTKKAYVRLTADYDALDIANR 138


>sp|P08792|RL25_PICJA 60S ribosomal protein L25 OS=Pichia jadinii
           GN=RPL25 PE=3 SV=1
          Length = 142

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 24/29 (82%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLTAD+DALD+ANK
Sbjct: 110 VNTLIRPNGTKKAYVRLTADHDALDIANK 138


>sp|Q07761|RL23A_TOBAC 60S ribosomal protein L23a OS=Nicotiana
           tabacum GN=RPL23A PE=2 SV=1
          Length = 154

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 122 VNTLIRPDGTKKAYVRLTPDYDALDVANK 150


>sp|Q9AT35|RL23A_DAUCA 60S ribosomal protein L23a OS=Daucus carota
           GN=RPL23A PE=2 SV=1
          Length = 154

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 122 VNTLIRPDGTKKAYVRLTPDYDALDVANK 150


>sp|Q20647|R23A2_CAEEL 60S ribosomal protein L23a 2
           OS=Caenorhabditis elegans GN=rpl-25.2 PE=2 SV=1
          Length = 146

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLITP  QKKAYVRL +DYDALDVANK
Sbjct: 114 VNTLITPLQQKKAYVRLASDYDALDVANK 142


>sp|Q9M3C3|R23A2_ARATH 60S ribosomal protein L23a-2 OS=Arabidopsis
           thaliana GN=RPL23AB PE=2 SV=1
          Length = 154

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 122 VNTLIRPDGTKKAYVRLTPDYDALDVANK 150


>sp|Q8LD46|R23A1_ARATH 60S ribosomal protein L23a-1 OS=Arabidopsis
           thaliana GN=RPL23AA PE=2 SV=2
          Length = 154

 Score = 52.0 bits (123), Expect = 9e-07
 Identities = 25/29 (86%), Positives = 25/29 (86%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLT DYDALDVANK
Sbjct: 122 VNTLIRPDGTKKAYVRLTPDYDALDVANK 150


>sp|O22644|RL23A_FRIAG 60S ribosomal protein L23A OS=Fritillaria
           agrestis GN=RPL23A PE=2 SV=1
          Length = 154

 Score = 51.6 bits (122), Expect = 1e-06
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLT DYDALD+ANK
Sbjct: 122 VNTLIRPDGTKKAYVRLTPDYDALDIANK 150


>sp|P62752|RL23A_RAT 60S ribosomal protein L23a OS=Rattus norvegicus
           GN=Rpl23a PE=2 SV=1
          Length = 156

 Score = 51.2 bits (121), Expect = 2e-06
 Identities = 24/29 (82%), Positives = 25/29 (86%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G+KKAYVRL  DYDALDVANK
Sbjct: 124 VNTLIRPDGEKKAYVRLAPDYDALDVANK 152
tr_hit_id A5X2V2
Definition tr|A5X2V2|A5X2V2_PTEVI Ribosomal protein L23a (Fragment) OS=Pteris vittata
Align length 29
Score (bit) 60.8
E-value 3.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944137|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_B11, 5'
         (357 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A5X2V2|A5X2V2_PTEVI Ribosomal protein L23a (Fragment) OS=Pter...    61   3e-08
tr|A8XK47|A8XK47_CAEBR CBR-RPL-25.1 protein OS=Caenorhabditis br...    55   2e-06
tr|A9U378|A9U378_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|A9T0J3|A9T0J3_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|A9S4N7|A9S4N7_PHYPA Predicted protein (Fragment) OS=Physcomit...    54   4e-06
tr|A9S3T5|A9S3T5_PHYPA Predicted protein OS=Physcomitrella paten...    54   4e-06
tr|A8J239|A8J239_CHLRE Ribosomal protein L23a OS=Chlamydomonas r...    53   7e-06
tr|A9NP86|A9NP86_PICSI Putative uncharacterized protein OS=Picea...    53   9e-06
tr|B3S688|B3S688_TRIAD Putative uncharacterized protein OS=Trich...    53   9e-06
tr|Q6FJT0|Q6FJT0_CANGA Similar to uniprot|P04456 Saccharomyces c...    53   9e-06
tr|B0DUL0|B0DUL0_LACBS Predicted protein OS=Laccaria bicolor (st...    53   9e-06
tr|Q8ISQ4|Q8ISQ4_BRABE Ribosomal protein L23a OS=Branchiostoma b...    52   1e-05
tr|Q4KTG2|Q4KTG2_SUBDO L23a OS=Suberites domuncula PE=2 SV=1           52   1e-05
tr|B7QA40|B7QA40_IXOSC 60S ribosomal protein L23, putative OS=Ix...    52   1e-05
tr|B6M3W5|B6M3W5_BRAFL Putative uncharacterized protein OS=Branc...    52   1e-05
tr|B6KG93|B6KG93_TOXGO Ribosomal protein L23a, putative OS=Toxop...    52   1e-05
tr|A9P3C3|A9P3C3_BOOMI Ribosomal protein L23 (Fragment) OS=Booph...    52   1e-05
tr|A5I8N9|A5I8N9_9ACAR Ribosomal protein L23 OS=Haemaphysalis qi...    52   1e-05
tr|A5H1Q6|A5H1Q6_HAELO Ribosomal protein L23 (Fragment) OS=Haema...    52   1e-05
tr|B3LIT9|B3LIT9_YEAS1 Ribosomal protein L25 OS=Saccharomyces ce...    52   1e-05
tr|A8NSX2|A8NSX2_COPC7 Putative uncharacterized protein OS=Copri...    52   1e-05
tr|A6ZN84|A6ZN84_YEAS7 Ribosomal protein L25 OS=Saccharomyces ce...    52   1e-05
tr|Q9LWB3|Q9LWB3_SPIOL Ribosomal protein L23 OS=Spinacia olerace...    52   1e-05
tr|Q9LWB2|Q9LWB2_SPIOL Ribosomal protein L23 OS=Spinacia olerace...    52   1e-05
tr|Q2V603|Q2V603_BRACM Putative uncharacterized protein OS=Brass...    52   1e-05
tr|B7FGR0|B7FGR0_MEDTR Putative uncharacterized protein OS=Medic...    52   1e-05
tr|A9PI84|A9PI84_POPTR Putative uncharacterized protein OS=Popul...    52   1e-05
tr|A9PAS4|A9PAS4_POPTR Putative uncharacterized protein OS=Popul...    52   1e-05
tr|A9P8I1|A9P8I1_POPTR Putative uncharacterized protein OS=Popul...    52   1e-05
tr|A8MS83|A8MS83_ARATH Uncharacterized protein At3g55280.3 OS=Ar...    52   1e-05

>tr|A5X2V2|A5X2V2_PTEVI Ribosomal protein L23a (Fragment) OS=Pteris
           vittata PE=2 SV=1
          Length = 128

 Score = 60.8 bits (146), Expect = 3e-08
 Identities = 29/29 (100%), Positives = 29/29 (100%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLITPKGQKKAYVRLTADYDALDVANK
Sbjct: 96  VNTLITPKGQKKAYVRLTADYDALDVANK 124


>tr|A8XK47|A8XK47_CAEBR CBR-RPL-25.1 protein OS=Caenorhabditis
           briggsae GN=Cbr-rpl-25.1 PE=3 SV=1
          Length = 147

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 27/29 (93%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLITP  QKKAYVRLTADYDALDVANK
Sbjct: 115 VNTLITPLQQKKAYVRLTADYDALDVANK 143


>tr|A9U378|A9U378_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_200781 PE=3 SV=1
          Length = 152

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/29 (89%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLTADYDALDVANK
Sbjct: 120 VNTLIRPDGAKKAYVRLTADYDALDVANK 148


>tr|A9T0J3|A9T0J3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_190449 PE=3 SV=1
          Length = 155

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/29 (89%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLTADYDALDVANK
Sbjct: 123 VNTLIRPDGAKKAYVRLTADYDALDVANK 151


>tr|A9S4N7|A9S4N7_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_48360 PE=3 SV=1
          Length = 140

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/29 (89%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLTADYDALDVANK
Sbjct: 108 VNTLIRPDGAKKAYVRLTADYDALDVANK 136


>tr|A9S3T5|A9S3T5_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_208348 PE=3 SV=1
          Length = 156

 Score = 53.9 bits (128), Expect = 4e-06
 Identities = 26/29 (89%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLTADYDALDVANK
Sbjct: 124 VNTLIRPDGAKKAYVRLTADYDALDVANK 152


>tr|A8J239|A8J239_CHLRE Ribosomal protein L23a OS=Chlamydomonas
           reinhardtii GN=RPL23a PE=3 SV=1
          Length = 147

 Score = 53.1 bits (126), Expect = 7e-06
 Identities = 26/29 (89%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P GQKKAYV LTADYDALDVANK
Sbjct: 115 VNTLIRPDGQKKAYVCLTADYDALDVANK 143


>tr|A9NP86|A9NP86_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 294

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G+KKAYVRLT DYDALDVANK
Sbjct: 262 VNTLIRPDGKKKAYVRLTRDYDALDVANK 290


>tr|B3S688|B3S688_TRIAD Putative uncharacterized protein
           OS=Trichoplax adhaerens GN=TRIADDRAFT_36440 PE=4 SV=1
          Length = 152

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 25/29 (86%), Positives = 26/29 (89%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLI P G KKAYVRLT+DYDALDVANK
Sbjct: 120 VNTLIRPDGAKKAYVRLTSDYDALDVANK 148


>tr|Q6FJT0|Q6FJT0_CANGA Similar to uniprot|P04456 Saccharomyces
           cerevisiae YOL127w RPL25 OS=Candida glabrata
           GN=CAGL0M03861g PE=3 SV=1
          Length = 142

 Score = 52.8 bits (125), Expect = 9e-06
 Identities = 24/29 (82%), Positives = 27/29 (93%)
 Frame = +1

Query: 1   VNTLITPKGQKKAYVRLTADYDALDVANK 87
           VNTLIT KG KKA+VRLTADYDALD+AN+
Sbjct: 110 VNTLITAKGNKKAFVRLTADYDALDIANR 138