NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944148
Clone id YMU02A01NGRL0005_C02
Library
Length 588
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_C02. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATGTGATAGTAGGCCTTTGGCATGAGCTCATGCACATCTTAGGGGAAGGTGCCATACAG
AGGAGACTCTCACTTCAGCTTGTGTTCTTCCTGCTTGCACAGTCTTCTCTTTGGAAGCTC
CAGCTCTATGATTTTCATCCCAGAATGGAGCAAGAAAAGCAGCATCCCTTCAGGTCAGCG
CAGTCCGACCCCGTCCATTTCGTCTTTCCTCTGCGTATCATAGCGCCTCCCGGCACAGAC
TCTCGCTTGCCCCGCGCCATTGATGCTTTCAGTGCCTTTAACGCCTACTGTCTCTCTCTC
AACCAACAGAACTCGGAAGCTCCTGGCTTTGGAGAGACGAAGAATGCTGTAGCAGAAAGC
TCCTCCCCTTGCTTAAACGGTAGCGTCAGTAGTGTAACTGTCGAGAAAACCCATCAAGGC
CAACCGGCTGGTTGCACAAATTTTGTGAGCCATTTCCATTCGGCAACAACACAAGACTTT
GGTGGTGTTTCTCCCCGCAAAGCCATTATCAATTTGCTTCGAATTTACCATGGAATATGC
CGCAACATGCTGTATGAAGAGGAGATCAAAGGGAAAGATGTGAGTAGT
■■Homology search results ■■ -
sp_hit_id Q8VZ17
Definition sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lysine-9 specific SUVH6 OS=Arabidopsis thaliana
Align length 32
Score (bit) 35.0
E-value 0.28
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944148|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_C02, 5'
         (588 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3 lys...    35   0.28 
sp|Q9WVB2|TLE2_MOUSE Transducin-like enhancer protein 2 OS=Mus m...    32   1.8  
sp|Q04725|TLE2_HUMAN Transducin-like enhancer protein 2 OS=Homo ...    32   1.8  
sp|Q7C397|COAE_SHIFL Dephospho-CoA kinase OS=Shigella flexneri G...    32   2.4  
sp|Q3Z5Q6|COAE_SHISS Dephospho-CoA kinase OS=Shigella sonnei (st...    32   3.1  
sp|Q32JY9|COAE_SHIDS Dephospho-CoA kinase OS=Shigella dysenteria...    32   3.1  
sp|Q326D2|COAE_SHIBS Dephospho-CoA kinase OS=Shigella boydii ser...    32   3.1  
sp|P0A6I9|COAE_ECOLI Dephospho-CoA kinase OS=Escherichia coli (s...    32   3.1  
sp|P0A6J0|COAE_ECO57 Dephospho-CoA kinase OS=Escherichia coli O1...    32   3.1  
sp|Q8FL55|COAE_ECOL6 Dephospho-CoA kinase OS=Escherichia coli O6...    31   4.0  
sp|Q8QHL5|PHC2_DANRE Polyhomeotic-like protein 2 OS=Danio rerio ...    31   5.2  
sp|Q5RFW2|TAB2_DANRE Mitogen-activated protein kinase kinase kin...    31   5.3  
sp|O08623|SQSTM_RAT Sequestosome-1 OS=Rattus norvegicus GN=Sqstm...    31   5.3  
sp|Q66HD5|CLIP4_RAT CAP-Gly domain-containing linker protein 4 O...    30   9.0  
sp|Q8CI96|CLIP4_MOUSE CAP-Gly domain-containing linker protein 4...    30   9.0  
sp|Q6DGF9|ACBD4_RAT Acyl-CoA-binding domain-containing protein 4...    30   9.0  

>sp|Q8VZ17|SUVH6_ARATH Histone-lysine N-methyltransferase, H3
           lysine-9 specific SUVH6 OS=Arabidopsis thaliana GN=SUVH6
           PE=2 SV=2
          Length = 790

 Score = 35.0 bits (79), Expect = 0.28
 Identities = 14/32 (43%), Positives = 21/32 (65%)
 Frame = +1

Query: 484 GVSPRKAIINLLRIYHGICRNMLYEEEIKGKD 579
           G S R  +   LR++HG+CR +L E+E K +D
Sbjct: 266 GDSSRNKVKETLRLFHGVCRKILQEDEAKPED 297


>sp|Q9WVB2|TLE2_MOUSE Transducin-like enhancer protein 2 OS=Mus
           musculus GN=Tle2 PE=2 SV=1
          Length = 767

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 19/55 (34%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
 Frame = +2

Query: 158 SSIPSGQRSPTPSISSFLC---VS*RLPAQTLACPAPLMLSVPLTPTVSLSTNRT 313
           +S P    +P PS +S LC        P  ++A  +PL LS P T + SL ++ T
Sbjct: 331 TSPPQDSSTPGPSSASHLCQLAAQPAAPTDSIALRSPLTLSSPFTSSFSLGSHST 385


>sp|Q04725|TLE2_HUMAN Transducin-like enhancer protein 2 OS=Homo
           sapiens GN=TLE2 PE=1 SV=2
          Length = 743

 Score = 32.3 bits (72), Expect = 1.8
 Identities = 21/55 (38%), Positives = 29/55 (52%), Gaps = 3/55 (5%)
 Frame = +2

Query: 158 SSIPSGQRSPTPSISSFLCVS*RLPA---QTLACPAPLMLSVPLTPTVSLSTNRT 313
           SS P    +P PS +S LC     PA    ++A  +PL LS P T + SL ++ T
Sbjct: 306 SSPPQDASTPGPSSASHLCQLAAKPAPSTDSVALRSPLTLSSPFTTSFSLGSHST 360


>sp|Q7C397|COAE_SHIFL Dephospho-CoA kinase OS=Shigella flexneri
           GN=coaE PE=3 SV=1
          Length = 206

 Score = 32.0 bits (71), Expect = 2.4
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 37  ILGEGAIQRRLSLQLVFFLLAQSSLWKLQLYDFHPRMEQEKQHPFRSAQSDPVHFVFPLR 216
           I  +G +QRR +L+   F   +   W   L   HP ++QE QH  + A S  V +V PL 
Sbjct: 59  IAADGTLQRR-ALRERIFANPEEKNWLNDL--LHPLIQQETQHQIQQATSPYVLWVVPLL 115

Query: 217 I 219
           +
Sbjct: 116 V 116


>sp|Q3Z5Q6|COAE_SHISS Dephospho-CoA kinase OS=Shigella sonnei
           (strain Ss046) GN=coaE PE=3 SV=1
          Length = 206

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 37  ILGEGAIQRRLSLQLVFFLLAQSSLWKLQLYDFHPRMEQEKQHPFRSAQSDPVHFVFPLR 216
           I  +G +QRR +L+   F   +   W   L   HP ++QE QH  + A S  V +V PL 
Sbjct: 59  IAADGTLQRR-ALRERIFANPEEKNWLNAL--LHPLIQQETQHQIQQATSPYVLWVVPLL 115

Query: 217 I 219
           +
Sbjct: 116 V 116


>sp|Q32JY9|COAE_SHIDS Dephospho-CoA kinase OS=Shigella dysenteriae
           serotype 1 (strain Sd197) GN=coaE PE=3 SV=1
          Length = 206

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 37  ILGEGAIQRRLSLQLVFFLLAQSSLWKLQLYDFHPRMEQEKQHPFRSAQSDPVHFVFPLR 216
           I  +G +QRR +L+   F   +   W   L   HP ++QE QH  + A S  V +V PL 
Sbjct: 59  IAADGTLQRR-ALRERIFANPEEKNWLNAL--LHPLIQQETQHQIQQATSPYVLWVVPLL 115

Query: 217 I 219
           +
Sbjct: 116 V 116


>sp|Q326D2|COAE_SHIBS Dephospho-CoA kinase OS=Shigella boydii
           serotype 4 (strain Sb227) GN=coaE PE=3 SV=1
          Length = 206

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 37  ILGEGAIQRRLSLQLVFFLLAQSSLWKLQLYDFHPRMEQEKQHPFRSAQSDPVHFVFPLR 216
           I  +G +QRR +L+   F   +   W   L   HP ++QE QH  + A S  V +V PL 
Sbjct: 59  IAADGTLQRR-ALRERIFANPEEKNWLNAL--LHPLIQQETQHQIQQATSPYVLWVVPLL 115

Query: 217 I 219
           +
Sbjct: 116 V 116


>sp|P0A6I9|COAE_ECOLI Dephospho-CoA kinase OS=Escherichia coli
           (strain K12) GN=coaE PE=1 SV=1
          Length = 206

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 37  ILGEGAIQRRLSLQLVFFLLAQSSLWKLQLYDFHPRMEQEKQHPFRSAQSDPVHFVFPLR 216
           I  +G +QRR +L+   F   +   W   L   HP ++QE QH  + A S  V +V PL 
Sbjct: 59  IAADGTLQRR-ALRERIFANPEEKNWLNAL--LHPLIQQETQHQIQQATSPYVLWVVPLL 115

Query: 217 I 219
           +
Sbjct: 116 V 116


>sp|P0A6J0|COAE_ECO57 Dephospho-CoA kinase OS=Escherichia coli
           O157:H7 GN=coaE PE=3 SV=1
          Length = 206

 Score = 31.6 bits (70), Expect = 3.1
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 37  ILGEGAIQRRLSLQLVFFLLAQSSLWKLQLYDFHPRMEQEKQHPFRSAQSDPVHFVFPLR 216
           I  +G +QRR +L+   F   +   W   L   HP ++QE QH  + A S  V +V PL 
Sbjct: 59  IAADGTLQRR-ALRERIFANPEEKNWLNAL--LHPLIQQETQHQIQQATSPYVLWVVPLL 115

Query: 217 I 219
           +
Sbjct: 116 V 116


>sp|Q8FL55|COAE_ECOL6 Dephospho-CoA kinase OS=Escherichia coli O6
           GN=coaE PE=3 SV=1
          Length = 206

 Score = 31.2 bits (69), Expect = 4.0
 Identities = 21/61 (34%), Positives = 31/61 (50%)
 Frame = +1

Query: 37  ILGEGAIQRRLSLQLVFFLLAQSSLWKLQLYDFHPRMEQEKQHPFRSAQSDPVHFVFPLR 216
           I  +G +QRR +L+   F   +   W   L   HP ++QE QH  + A S  V +V PL 
Sbjct: 59  IAADGTLQRR-ALRERIFANPEEKNWLNAL--LHPLIQQETQHQIQRATSPYVLWVVPLL 115

Query: 217 I 219
           +
Sbjct: 116 V 116
tr_hit_id B8ET28
Definition tr|B8ET28|B8ET28_METSI DNA gyrase, A subunit OS=Methylocella silvestris BL2
Align length 71
Score (bit) 34.7
E-value 4.1
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944148|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_C02, 5'
         (588 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B8ET28|B8ET28_METSI DNA gyrase, A subunit OS=Methylocella sil...    35   4.1  
tr|Q583D8|Q583D8_9TRYP Putative uncharacterized protein OS=Trypa...    35   4.1  
tr|B3N5E5|B3N5E5_DROER GG10381 OS=Drosophila erecta GN=GG10381 P...    34   5.4  
tr|Q7VYJ6|Q7VYJ6_BORPE Putative uncharacterized protein OS=Borde...    34   7.0  
tr|A6S1N1|A6S1N1_BOTFB Putative uncharacterized protein OS=Botry...    34   7.1  
tr|B0UMW0|B0UMW0_METS4 DNA gyrase, A subunit OS=Methylobacterium...    33   9.1  
tr|A7INE4|A7INE4_XANP2 DNA gyrase, A subunit OS=Xanthobacter aut...    33   9.1  
tr|B8IV01|B8IV01_METNO DNA gyrase, A subunit OS=Methylobacterium...    33   9.1  
tr|B8LD12|B8LD12_THAPS Predicted protein OS=Thalassiosira pseudo...    33   9.1  
tr|Q5CLP9|Q5CLP9_CRYHO Putative uncharacterized protein OS=Crypt...    33   9.2  

>tr|B8ET28|B8ET28_METSI DNA gyrase, A subunit OS=Methylocella
           silvestris BL2 GN=Msil_2232 PE=4 SV=1
          Length = 927

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 23/71 (32%), Positives = 33/71 (46%)
 Frame = -3

Query: 217 YAEERRNGRGRTALT*RDAAFLAPFWDENHRAGASKEKTVQAGRTQAEVRVSSVWHLPLR 38
           Y  +RR G+GR+A+  RD  F+A  +       AS    V    +  +V    VW LPL 
Sbjct: 556 YRAQRRGGKGRSAMQTRDEDFVARLF------VASTHAPVLFFSSAGQVYKEKVWRLPLA 609

Query: 37  CA*AHAKGLLS 5
              A  K L++
Sbjct: 610 APQARGKALVN 620


>tr|Q583D8|Q583D8_9TRYP Putative uncharacterized protein
            OS=Trypanosoma brucei GN=Tb927.4.4530 PE=4 SV=1
          Length = 1141

 Score = 34.7 bits (78), Expect = 4.1
 Identities = 37/136 (27%), Positives = 60/136 (44%), Gaps = 14/136 (10%)
 Frame = +1

Query: 31   MHILGEGAIQRRLSLQLVFFLLAQSSLWKLQLYDFHPRMEQEKQHPFRSAQSDPVHFVFP 210
            + +  EG   RRL L  V  +++ S+L  L    F   +         S+   P+ F++ 
Sbjct: 962  LELAEEGRSIRRLPLPPVVDIMSCSALGALDHQSFS--VSPCALSSLSSSLPSPLCFIYT 1019

Query: 211  LRIIAPPG------TDSRLP-----RAIDAFSAFNAYCLSLNQQNSEAPGFGETK---NA 348
            +R++AP G      +D RLP      A++  S  N+Y L L +     P  G      + 
Sbjct: 1020 VRVVAPCGNVLMGFSDRRLPLEVFAPALNHLSYSNSYWLHLGRGTLYCPRLGIADLPYSP 1079

Query: 349  VAESSSPCLNGSVSSV 396
             A S+S  +NG V+ V
Sbjct: 1080 FARSNSIEVNGEVTCV 1095


>tr|B3N5E5|B3N5E5_DROER GG10381 OS=Drosophila erecta GN=GG10381 PE=4
           SV=1
          Length = 291

 Score = 34.3 bits (77), Expect = 5.4
 Identities = 18/53 (33%), Positives = 26/53 (49%)
 Frame = +1

Query: 334 ETKNAVAESSSPCLNGSVSSVTVEKTHQGQPAGCTNFVSHFHSATTQDFGGVS 492
           +TK     S+SP  N S SS     T    PAG TN+ +H  +  +Q +  +S
Sbjct: 105 KTKTGSPPSTSPTPNASSSSTAAVATKSASPAGYTNWSNHHATLCSQSWVAIS 157


>tr|Q7VYJ6|Q7VYJ6_BORPE Putative uncharacterized protein
           OS=Bordetella pertussis GN=BP1335 PE=4 SV=1
          Length = 381

 Score = 33.9 bits (76), Expect = 7.0
 Identities = 20/46 (43%), Positives = 28/46 (60%)
 Frame = +3

Query: 75  SACVLPACTVFSLEAPAL*FSSQNGARKAASLQVSAVRPRPFRLSS 212
           S CVLP CTVF+L+      + Q GAR    L+ SA+R +P R ++
Sbjct: 125 SDCVLPGCTVFALDE-----ARQGGAR---MLRTSALRVKPVRATA 162


>tr|A6S1N1|A6S1N1_BOTFB Putative uncharacterized protein
           OS=Botryotinia fuckeliana (strain B05.10) GN=BC1G_06728
           PE=4 SV=1
          Length = 534

 Score = 33.9 bits (76), Expect = 7.1
 Identities = 23/60 (38%), Positives = 30/60 (50%)
 Frame = +1

Query: 313 SEAPGFGETKNAVAESSSPCLNGSVSSVTVEKTHQGQPAGCTNFVSHFHSATTQDFGGVS 492
           S  PGFG   +A   SS+P    S+SS + EK+  G       F S F S  T  FGG++
Sbjct: 254 SPLPGFGSFASAKPPSSTPA--SSISSSSAEKSTSG-------FGSAFGSGATSGFGGLA 304


>tr|B0UMW0|B0UMW0_METS4 DNA gyrase, A subunit OS=Methylobacterium
           sp. (strain 4-46) GN=M446_4447 PE=4 SV=1
          Length = 914

 Score = 33.5 bits (75), Expect = 9.1
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -3

Query: 217 YAEERRNGRGRTALT*RDAAFLAPFWDENHRAGASKEKTVQAGRTQAEVRVSSVWHLPLR 38
           Y  +RR G+GR+ +T RD  F+   +       A+    V    +Q +     VW LPL 
Sbjct: 558 YRAQRRGGKGRSGMTTRDEDFVTRLF------VANTHTPVLFFSSQGQAYKEKVWRLPLA 611

Query: 37  CA*AHAKGLLS 5
              A  K L++
Sbjct: 612 APNARGKALVN 622


>tr|A7INE4|A7INE4_XANP2 DNA gyrase, A subunit OS=Xanthobacter
           autotrophicus (strain ATCC BAA-1158 / Py2) GN=Xaut_4317
           PE=4 SV=1
          Length = 914

 Score = 33.5 bits (75), Expect = 9.1
 Identities = 22/71 (30%), Positives = 33/71 (46%)
 Frame = -3

Query: 217 YAEERRNGRGRTALT*RDAAFLAPFWDENHRAGASKEKTVQAGRTQAEVRVSSVWHLPLR 38
           Y  +RR G+GR+A+  RD  F+   +       AS    V    ++ +V    VW LPL 
Sbjct: 557 YRAQRRGGKGRSAMQTRDEDFVTRLF------VASTHAPVLFFSSKGQVYKLKVWRLPLA 610

Query: 37  CA*AHAKGLLS 5
              A  K L++
Sbjct: 611 APQARGKALIN 621


>tr|B8IV01|B8IV01_METNO DNA gyrase, A subunit OS=Methylobacterium
           nodulans ORS 2060 GN=Mnod_4181 PE=4 SV=1
          Length = 911

 Score = 33.5 bits (75), Expect = 9.1
 Identities = 21/71 (29%), Positives = 32/71 (45%)
 Frame = -3

Query: 217 YAEERRNGRGRTALT*RDAAFLAPFWDENHRAGASKEKTVQAGRTQAEVRVSSVWHLPLR 38
           Y  +RR G+GR+ +T RD  F+   +       A+    V    +Q +     VW LPL 
Sbjct: 559 YRAQRRGGKGRSGMTTRDEDFVTRLF------VANTHTPVLFFSSQGQAYKEKVWRLPLA 612

Query: 37  CA*AHAKGLLS 5
              A  K L++
Sbjct: 613 APNARGKALVN 623


>tr|B8LD12|B8LD12_THAPS Predicted protein OS=Thalassiosira
           pseudonana CCMP1335 GN=THAPSDRAFT_11089 PE=4 SV=1
          Length = 421

 Score = 33.5 bits (75), Expect = 9.1
 Identities = 12/32 (37%), Positives = 19/32 (59%)
 Frame = +3

Query: 393 CNCRENPSRPTGWLHKFCEPFPFGNNTRLWWC 488
           C+C+E+  R  GW  ++CE   + NN +L  C
Sbjct: 145 CDCQESDDRDDGWNREYCEYDCYANNKKLSGC 176


>tr|Q5CLP9|Q5CLP9_CRYHO Putative uncharacterized protein
           OS=Cryptosporidium hominis GN=Chro.70384 PE=4 SV=1
          Length = 635

 Score = 33.5 bits (75), Expect = 9.2
 Identities = 22/81 (27%), Positives = 43/81 (53%), Gaps = 3/81 (3%)
 Frame = +1

Query: 337 TKNAVAESSSPCLNGSVSSVTVEKTHQGQPAGCTNFVSHFHSATTQDF-GGVSPRKAIIN 513
           TK+ + +S+   LN + ++VTVEK+   QP   T+++S   S +  +F  G S     +N
Sbjct: 325 TKSRIEKSALSDLNDTKNTVTVEKSTDFQPTLTTHYISISRSLSLSEFTNGTSQSSQPLN 384

Query: 514 --LLRIYHGICRNMLYEEEIK 570
             ++ +  G   N   E++++
Sbjct: 385 PSIINLNQGPSANTTNEDKLE 405