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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944165
Clone id YMU02A01NGRL0005_C22
Library
Length 418
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_C22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAATATGTGTTTTCTTATTATTTCTCCA
AAATTAGAGGTAGATTAATCAATCTCGTCACTCATTCATTTCAAGAACTAGGGAAGATAG
TGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATACTTGGTTTAATTTCTACTTCCGGG
GAGATAAATAAAGAAAAAAATCTATGGGTAGACGTCTAAGATAGCTGACTCATCGTCACT
AAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGAATGAATAAATCCGGGTTTGTCAAG
ATTATTGAACATCTATTTGGTTGAACGGGATCCCTCGTTTCAACAACTCGGTGAGATATA
TTTCCCTAAGGGTTTTTTCCTGGAGAAATATTTCACCTAAGGGTTTTTTCCTGCTTGT
■■Homology search results ■■ -
sp_hit_id O43114
Definition sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Schizosaccharomyces pombe
Align length 57
Score (bit) 30.0
E-value 3.7
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944165|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_C22, 5'
         (400 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5 OS=Sch...    30   3.7  
sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    29   8.3  

>sp|O43114|ORC5_SCHPO Origin recognition complex subunit 5
           OS=Schizosaccharomyces pombe GN=orc5 PE=1 SV=2
          Length = 455

 Score = 30.0 bits (66), Expect = 3.7
 Identities = 16/57 (28%), Positives = 33/57 (57%), Gaps = 8/57 (14%)
 Frame = +1

Query: 145 LISTSGEINKEKNLWVDV*DS*LIVTKPQRI--------NLGKKVGMNKSGFVKIIE 291
           L+ T+ +++KE+N+W+++ D   +     RI        ++  K G+N SGF+ ++E
Sbjct: 51  LLRTAFDLSKEENVWINLQDCFTVAHFWYRILIKVGVDKDIALKKGINISGFIYLLE 107


>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 28.9 bits (63), Expect = 8.3
 Identities = 18/55 (32%), Positives = 30/55 (54%)
 Frame = +1

Query: 115 IVLVPQEILGLISTSGEINKEKNLWVDV*DS*LIVTKPQRINLGKKVGMNKSGFV 279
           IVL+ +  + LI+   +I  EKNLW+ + +    +TK Q+I    K  +N  G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKIAN----ITKDQKIIEWAKNKINYKGLL 674
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944165|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_C22, 5'
         (400 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******