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NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944180
Clone id YMU02A01NGRL0005_D16
Library
Length 427
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_D16. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCAGCCTGATGAAGCTCGTCTTCTTAAGGCATACGGAGAGCTTCCTGACAATGTCCGC
CTCAATGAAGGTATTGCAGGTGGCATGGATGAAGAAGATGATGGTGCTGGTGATGACTGC
CTGGAATTCGAAGATGAGGACATTGATAAGATCTGATCTGTGAGAACAGCATACTTTTTT
GAGTATTTAAAGCCTGTGCCTGTTAGCCTGGGAGCCATATCTAGGATTTTCTGTCAAGGC
CTTGCATGCTATGGTTTTTTGCATGTTGGGGCTTTTATTGGAATTCTTGATGCGGTTGGA
ATACTTTTTTCCCACACACAGGGATTTTTATGTGATTTCTTGTCACAAGAACTCTGTATG
TATGGTCTTCAATATATCGCCATGAAAGTATTTGTAATANAAAAAAAAAAAAAAAAAAAA
AAAAAAA
■■Homology search results ■■ -
sp_hit_id P56331
Definition sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia
Align length 49
Score (bit) 56.6
E-value 4.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944180|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_D16, 5'
         (400 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A...    57   4e-08
sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A...    50   3e-06
sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A O...    35   0.12 
sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A...    35   0.12 
sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A...    35   0.12 
sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1...    35   0.12 
sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1...    35   0.12 
sp|Q5RA42|IF1AX_PONAB Eukaryotic translation initiation factor 1...    35   0.12 
sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1...    35   0.12 
sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1...    35   0.12 
sp|Q54YJ6|IF1A_DICDI Eukaryotic translation initiation factor 1A...    33   0.34 
sp|Q5P9M8|SYV_ANAMM Valyl-tRNA synthetase OS=Anaplasma marginale...    32   0.75 
sp|P38912|IF1A_YEAST Eukaryotic translation initiation factor 1A...    31   1.7  
sp|O43022|YGV8_SCHPO Uncharacterized protein C354.08c OS=Schizos...    30   4.9  
sp|P55877|IF1A_SCHPO Eukaryotic translation initiation factor 1A...    29   6.3  

>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A
           OS=Onobrychis viciifolia PE=2 SV=2
          Length = 145

 Score = 56.6 bits (135), Expect = 4e-08
 Identities = 29/49 (59%), Positives = 30/49 (61%)
 Frame = +1

Query: 7   PDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           PDEARLLKAYGELPDN RLN                  +EFEDEDIDKI
Sbjct: 97  PDEARLLKAYGELPDNTRLNEGIGAGGLDEEMDTANDYIEFEDEDIDKI 145


>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A
           OS=Triticum aestivum PE=1 SV=2
          Length = 144

 Score = 50.1 bits (118), Expect = 3e-06
 Identities = 28/51 (54%), Positives = 30/51 (58%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           Y  DEARLLKAYGELPD VRLN                  ++FEDEDIDKI
Sbjct: 95  YMNDEARLLKAYGELPDTVRLNEGVDVDGPEEGEGDSDY-IQFEDEDIDKI 144


>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A
           OS=Rattus norvegicus GN=Eif1a PE=2 SV=3
          Length = 144

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLN 66
           Y  DEAR LKAYGELP++ ++N
Sbjct: 95  YNADEARSLKAYGELPEHAKIN 116


>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A
           OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2
          Length = 144

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLN 66
           Y  DEAR LKAYGELP++ ++N
Sbjct: 95  YNADEARSLKAYGELPEHAKIN 116


>sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A
           OS=Mus musculus GN=Eif1a PE=2 SV=3
          Length = 144

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLN 66
           Y  DEAR LKAYGELP++ ++N
Sbjct: 95  YNADEARSLKAYGELPEHAKIN 116


>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A,
           Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3
          Length = 144

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLN 66
           Y  DEAR LKAYGELP++ ++N
Sbjct: 95  YNADEARSLKAYGELPEHAKIN 116


>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A,
           Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4
          Length = 144

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLN 66
           Y  DEAR LKAYGELP++ ++N
Sbjct: 95  YNADEARSLKAYGELPEHAKIN 116


>sp|Q5RA42|IF1AX_PONAB Eukaryotic translation initiation factor 1A,
           X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3
          Length = 144

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLN 66
           Y  DEAR LKAYGELP++ ++N
Sbjct: 95  YNADEARSLKAYGELPEHAKIN 116


>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A,
           X-chromosomal OS=Mus musculus GN=Eif1ay PE=2 SV=3
          Length = 144

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLN 66
           Y  DEAR LKAYGELP++ ++N
Sbjct: 95  YNADEARSLKAYGELPEHAKIN 116


>sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A,
           X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2
          Length = 144

 Score = 35.0 bits (79), Expect = 0.12
 Identities = 14/22 (63%), Positives = 18/22 (81%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLN 66
           Y  DEAR LKAYGELP++ ++N
Sbjct: 95  YNADEARSLKAYGELPEHAKIN 116
tr_hit_id A9P2I8
Definition tr|A9P2I8|A9P2I8_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 51
Score (bit) 59.3
E-value 9.0e-08
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944180|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_D16, 5'
         (400 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9P2I8|A9P2I8_PICSI Putative uncharacterized protein OS=Picea...    59   9e-08
tr|A9NLE4|A9NLE4_PICSI Putative uncharacterized protein OS=Picea...    59   9e-08
tr|A9TTA1|A9TTA1_PHYPA Predicted protein OS=Physcomitrella paten...    59   2e-07
tr|A9RER3|A9RER3_PHYPA Predicted protein OS=Physcomitrella paten...    59   2e-07
tr|A9PE28|A9PE28_POPTR Putative uncharacterized protein OS=Popul...    58   3e-07
tr|A9PCD3|A9PCD3_POPTR Putative uncharacterized protein OS=Popul...    58   3e-07
tr|A5BQH0|A5BQH0_VITVI Putative uncharacterized protein (Chromos...    58   3e-07
tr|Q8VXT0|Q8VXT0_BETVU Translation initiation factor (EIF-1A) OS...    57   6e-07
tr|B5M1Y2|B5M1Y2_RHEAU Translation initiation factor OS=Rheum au...    57   6e-07
tr|Q1M2Y3|Q1M2Y3_PLAAC Translation initiation factor eIF-1A-like...    55   2e-06
tr|Q2XTB8|Q2XTB8_SOLTU Putative translation initiation factor eI...    54   4e-06
tr|A7NVA8|A7NVA8_VITVI Chromosome chr18 scaffold_1, whole genome...    54   4e-06
tr|Q9FKI2|Q9FKI2_ARATH Similarity to translation initiation fact...    54   5e-06
tr|Q9SJB9|Q9SJB9_ARATH Putative translation initiation factor eI...    53   7e-06
tr|Q93VF1|Q93VF1_ARATH At2g04520/T1O3.7 OS=Arabidopsis thaliana ...    53   9e-06
tr|Q7Y1V3|Q7Y1V3_ORYSJ Os02g0300700 protein OS=Oryza sativa subs...    50   7e-05
tr|A2X3S0|A2X3S0_ORYSI Putative uncharacterized protein OS=Oryza...    50   7e-05
tr|Q7Y1V2|Q7Y1V2_ORYSJ Os06g0342200 protein OS=Oryza sativa subs...    49   1e-04
tr|A2YCL4|A2YCL4_ORYSI Putative uncharacterized protein OS=Oryza...    49   1e-04
tr|B6UIF5|B6UIF5_MAIZE Eukaryotic translation initiation factor ...    47   6e-04
tr|B4FUJ1|B4FUJ1_MAIZE Putative uncharacterized protein OS=Zea m...    47   6e-04
tr|A7QB05|A7QB05_VITVI Chromosome chr5 scaffold_72, whole genome...    44   0.003
tr|A5BTF1|A5BTF1_VITVI Putative uncharacterized protein (Fragmen...    44   0.003
tr|B6T9H2|B6T9H2_MAIZE Eukaryotic translation initiation factor ...    40   0.044
tr|A7T5J5|A7T5J5_NEMVE Predicted protein (Fragment) OS=Nematoste...    40   0.075
tr|A7SX41|A7SX41_NEMVE Predicted protein (Fragment) OS=Nematoste...    40   0.075
tr|A7SV47|A7SV47_NEMVE Predicted protein OS=Nematostella vectens...    40   0.075
tr|Q8BX20|Q8BX20_MOUSE Novel translation initiation factor 1A / ...    39   0.098
tr|Q3UTA4|Q3UTA4_MOUSE Putative uncharacterized protein OS=Mus m...    39   0.098
tr|Q3TQZ4|Q3TQZ4_MOUSE Putative uncharacterized protein OS=Mus m...    39   0.098

>tr|A9P2I8|A9P2I8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 145

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 30/51 (58%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           Y PDEARLLKAYGELP+NVRLN                  +EFEDEDIDKI
Sbjct: 95  YMPDEARLLKAYGELPENVRLNEGIAGGLDEDDEGGGDDYIEFEDEDIDKI 145


>tr|A9NLE4|A9NLE4_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 145

 Score = 59.3 bits (142), Expect = 9e-08
 Identities = 30/51 (58%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           Y PDEARLLKAYGELP+NVRLN                  +EFEDEDIDKI
Sbjct: 95  YMPDEARLLKAYGELPENVRLNEGIAGGLDEDEEGGADDYIEFEDEDIDKI 145


>tr|A9TTA1|A9TTA1_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_150243 PE=3 SV=1
          Length = 145

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 30/51 (58%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           YQPDEARLLKAY ELP+NVRLN                  +EFEDEDIDKI
Sbjct: 95  YQPDEARLLKAYSELPENVRLNEGIAGGMDDEEDGGGDDYVEFEDEDIDKI 145


>tr|A9RER3|A9RER3_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_158714 PE=3 SV=1
          Length = 145

 Score = 58.5 bits (140), Expect = 2e-07
 Identities = 30/51 (58%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           YQPDEARLLKAY ELP+NVRLN                  +EFEDEDIDKI
Sbjct: 95  YQPDEARLLKAYSELPENVRLNEGIAGGMDDEEGGGDDDYVEFEDEDIDKI 145


>tr|A9PE28|A9PE28_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 145

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 29/51 (56%), Positives = 31/51 (60%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           Y PDEARLLKAYGELP+N RLN                  +EFEDEDIDKI
Sbjct: 95  YMPDEARLLKAYGELPENTRLNEGIAGGLDEEDDGAGDDYIEFEDEDIDKI 145


>tr|A9PCD3|A9PCD3_POPTR Putative uncharacterized protein OS=Populus
           trichocarpa PE=2 SV=1
          Length = 145

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 29/51 (56%), Positives = 31/51 (60%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           Y PDEARLLKAYGELP+N RLN                  +EFEDEDIDKI
Sbjct: 95  YMPDEARLLKAYGELPENTRLNEGIAGGLDEEDDGAGDDYIEFEDEDIDKI 145


>tr|A5BQH0|A5BQH0_VITVI Putative uncharacterized protein (Chromosome
           chr15 scaffold_40, whole genome shotgun sequence)
           OS=Vitis vinifera GN=GSVIVT00026971001 PE=3 SV=1
          Length = 145

 Score = 57.8 bits (138), Expect = 3e-07
 Identities = 29/51 (56%), Positives = 31/51 (60%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           Y PDEARLLKAYGELP+N RLN                  +EFEDEDIDKI
Sbjct: 95  YMPDEARLLKAYGELPENTRLNEGIAGGLDEEDEGAGDDYIEFEDEDIDKI 145


>tr|Q8VXT0|Q8VXT0_BETVU Translation initiation factor (EIF-1A)
           OS=Beta vulgaris GN=eif-1A PE=2 SV=1
          Length = 144

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 30/51 (58%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           Y PDEARLLKAYGELPDN+RLN                  +EFEDEDIDKI
Sbjct: 95  YMPDEARLLKAYGELPDNIRLNEGVANLDEEDDGGADDY-IEFEDEDIDKI 144


>tr|B5M1Y2|B5M1Y2_RHEAU Translation initiation factor OS=Rheum
           australe PE=2 SV=1
          Length = 144

 Score = 56.6 bits (135), Expect = 6e-07
 Identities = 30/51 (58%), Positives = 32/51 (62%)
 Frame = +1

Query: 1   YQPDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           Y PDEARLLKAYGELPDN+RLN                  +EFEDEDIDKI
Sbjct: 95  YMPDEARLLKAYGELPDNIRLNEGIATLDEEDDGAADDY-IEFEDEDIDKI 144


>tr|Q1M2Y3|Q1M2Y3_PLAAC Translation initiation factor eIF-1A-like
           (Fragment) OS=Platanus acerifolia GN=eif PE=2 SV=1
          Length = 50

 Score = 55.1 bits (131), Expect = 2e-06
 Identities = 28/49 (57%), Positives = 30/49 (61%)
 Frame = +1

Query: 7   PDEARLLKAYGELPDNVRLNXXXXXXXXXXXXXXXXXCLEFEDEDIDKI 153
           PDEARLLKAYGELP+N RLN                  +EFEDEDIDKI
Sbjct: 2   PDEARLLKAYGELPENTRLNEGIAAGLDEEDDGAGDDYIEFEDEDIDKI 50