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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944184
Clone id YMU02A01NGRL0005_D22
Library
Length 518
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_D22. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TATCGTAGCGGGTATAGTTTAGTGGTAAAAGTGTGACTCGTCTCGCAGTGATTTTGATAG
TTGAGGGATCGTATCTCGGCTAAATTAACTGAAAGAAAAAACTTTATCTTCGCAGAAAAT
ATGTGTTTTCTTATTATTTCTCCAAAATTAGAGGTAGATTAATCAATCTCGTCACTCATT
CATTTCAAGAACTAGGGAAGATAGTGACGAAGCAGAATTGTTTTGGTACCCCAAGAAATA
CTTGGTTTAATTTCTACTTCCGGGGAGATAAATAAAGAAAAAAATCTATGGGTAGACGTC
TAATATAGCTGACTCATCGTCACTAAACCTCAGAGAATAAATCTGGGAAAGAAAGTTGGA
ATAAATAAATCCGGGTTTGTCAAGATTATTGAACATCTATTTGGTTGAACGGGATCCCTC
GTTTCAACAACTCGGTGAGATATATTTCCCTAAGGGTTTTTTCCTGAAAAAAAAAAAAAA
ATAAAGAACGAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id O51578
Definition sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia burgdorferi
Align length 55
Score (bit) 29.6
E-value 6.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944184|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_D22, 5'
         (466 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrel...    30   6.8  

>sp|O51578|EX5B_BORBU Exodeoxyribonuclease V beta chain OS=Borrelia
           burgdorferi GN=recB PE=3 SV=1
          Length = 1169

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 19/55 (34%), Positives = 29/55 (52%)
 Frame = +1

Query: 217 IVLVPQEILGLISTSGEINKEKNLWVDV*YS*LIVTKPQRINLGKKVGINKSGFV 381
           IVL+ +  + LI+   +I  EKNLW+ +      +TK Q+I    K  IN  G +
Sbjct: 624 IVLLEKNEITLINAINKITFEKNLWIKI----ANITKDQKIIEWAKNKINYKGLL 674
tr_hit_id A6D2J9
Definition tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio shilonii AK1
Align length 50
Score (bit) 35.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944184|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_D22, 5'
         (466 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibri...    35   1.8  

>tr|A6D2J9|A6D2J9_9VIBR Putative uncharacterized protein OS=Vibrio
           shilonii AK1 GN=VSAK1_01567 PE=4 SV=1
          Length = 319

 Score = 35.0 bits (79), Expect = 1.8
 Identities = 16/50 (32%), Positives = 31/50 (62%)
 Frame = -3

Query: 188 LK*MSDEID*STSNFGEIIRKHIFSAKIKFFLSVNLAEIRSLNYQNHCET 39
           LK +++E+D ST +     ++++F A  +F+L VNL + R++  Q  C +
Sbjct: 234 LKQIANELDISTKSINLFFKEYLFIAPKRFYLLVNLFKFRNILIQGKCSS 283