BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944200|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_E18, 5'
         (207 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q759T1|SNX41_ASHGO Sorting nexin-41 OS=Ashbya gossypii GN=SNX...    30   4.9  
sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B OS=X...    30   4.9  
sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia OS=Xen...    29   6.4  
sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C OS=X...    29   6.4  
sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A (Fra...    29   6.4  
sp|P38550|RPOC2_TOBAC DNA-directed RNA polymerase subunit beta''...    29   8.4  
sp|Q3C1G9|RPOC2_NICSY DNA-directed RNA polymerase subunit beta''...    29   8.4  
sp|Q8S8Y1|RPOC2_ATRBE DNA-directed RNA polymerase subunit beta''...    29   8.4  
sp|Q5B6U6|ATG9_EMENI Autophagy-related protein 9 OS=Emericella n...    29   8.4  

>sp|Q759T1|SNX41_ASHGO Sorting nexin-41 OS=Ashbya gossypii GN=SNX41
           PE=3 SV=1
          Length = 603

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 18/43 (41%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
 Frame = +3

Query: 18  VLPPPPSHHPASQYVSNSLNSFT--RYILRTRKLGTRDL-VCH 137
           ++PP PS HP  +Y  N LN+    R I + R+L +R L  CH
Sbjct: 178 IIPPIPSKHPLIRYFLNPLNAENDIRIIEKRRRLLSRFLNNCH 220


>sp|Q6NRV8|R111B_XENLA E3 ubiquitin-protein ligase arkadia-B
           OS=Xenopus laevis GN=rnf111-B PE=2 SV=1
          Length = 959

 Score = 29.6 bits (65), Expect = 4.9
 Identities = 16/42 (38%), Positives = 22/42 (52%), Gaps = 6/42 (14%)
 Frame = +3

Query: 15  SVLPPPPSHH------PASQYVSNSLNSFTRYILRTRKLGTR 122
           +V PPPPSHH      P  Q++S S  S + +I  T  +  R
Sbjct: 668 AVPPPPPSHHLSAAAAPLPQHLSTSHQSMSHHISATAPVTQR 709


>sp|Q0V9R0|RN111_XENTR E3 ubiquitin-protein ligase arkadia
           OS=Xenopus tropicalis GN=rnf111 PE=2 SV=1
          Length = 954

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 17/47 (36%), Positives = 27/47 (57%), Gaps = 8/47 (17%)
 Frame = +3

Query: 15  SVLPPPPSHH----PASQYVSNSLNSFTRYIL----RTRKLGTRDLV 131
           +V PPPPSHH     A Q++S S  S + +I      T++L T +++
Sbjct: 665 AVPPPPPSHHLSTAAAPQHLSTSHQSMSHHISATAPATQRLHTHEVI 711


>sp|Q66J97|R111C_XENLA E3 ubiquitin-protein ligase arkadia-C
           OS=Xenopus laevis GN=rnf111-C PE=2 SV=1
          Length = 967

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = +3

Query: 15  SVLPPPPSHH------PASQYVSNSLNSFTRYILRT 104
           +V PPPPSHH      P  Q++S S  S + +I  T
Sbjct: 676 AVPPPPPSHHLSTAAAPLPQHLSTSHQSMSHHISAT 711


>sp|Q90ZT7|R111A_XENLA E3 ubiquitin-protein ligase arkadia-A
           (Fragment) OS=Xenopus laevis GN=rnf111-A PE=2 SV=1
          Length = 923

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 15/36 (41%), Positives = 20/36 (55%), Gaps = 6/36 (16%)
 Frame = +3

Query: 15  SVLPPPPSHH------PASQYVSNSLNSFTRYILRT 104
           +V PPPPSHH      P  Q++S S  S + +I  T
Sbjct: 632 AVPPPPPSHHLSAAAAPLPQHLSTSHQSMSHHISAT 667


>sp|P38550|RPOC2_TOBAC DNA-directed RNA polymerase subunit beta''
            OS=Nicotiana tabacum GN=rpoC2 PE=3 SV=1
          Length = 1388

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 62   FEFIKFVYEIYLENKKTWNPRPC 130
            F+ IKF Y +  EN K +NP PC
Sbjct: 1018 FQVIKFKYYLMDENGKIFNPDPC 1040


>sp|Q3C1G9|RPOC2_NICSY DNA-directed RNA polymerase subunit beta''
            OS=Nicotiana sylvestris GN=rpoC2 PE=3 SV=1
          Length = 1392

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 62   FEFIKFVYEIYLENKKTWNPRPC 130
            F+ IKF Y +  EN K +NP PC
Sbjct: 1022 FQVIKFKYYLMDENGKIFNPDPC 1044


>sp|Q8S8Y1|RPOC2_ATRBE DNA-directed RNA polymerase subunit beta''
            OS=Atropa belladonna GN=rpoC2 PE=3 SV=1
          Length = 1389

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 12/23 (52%), Positives = 15/23 (65%)
 Frame = +2

Query: 62   FEFIKFVYEIYLENKKTWNPRPC 130
            F+ IKF Y +  EN K +NP PC
Sbjct: 1019 FQVIKFKYYLMDENGKIFNPDPC 1041


>sp|Q5B6U6|ATG9_EMENI Autophagy-related protein 9 OS=Emericella
           nidulans GN=atg9 PE=3 SV=1
          Length = 820

 Score = 28.9 bits (63), Expect = 8.4
 Identities = 14/28 (50%), Positives = 16/28 (57%)
 Frame = +3

Query: 21  LPPPPSHHPASQYVSNSLNSFTRYILRT 104
           LPPPPSHH +    S S  S  R  +RT
Sbjct: 145 LPPPPSHHFSDPQPSRSARSPRREHIRT 172

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944200|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_E18, 5'
         (207 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******