DK944211 [AcEST]

DK944211
Clone id	YMU02A01NGRL0005_F05
Library	YMU02
Length	209
Definition	Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_F05. 5' end sequence.
Accession	DK944211
Tissue type	young leaves
Developmental stage	sporophyte
Contig ID	CL2698Contig1
Sequence	GCAGTAACACACTTTCTAGAGTAGATAGAGCTTTTCTTCCTTTTTAATGCACCATTACTA TTTCTGTCACACTAGCCAATTTACCCGATCGACATTTTTGTAATGTACCCATTAGTGGTG AATATCAATATGTATCGGGATTTGTTCAAAAGAAAGCATGCTCTATGAAGTAGTGATTGT GAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■	-
Swiss-Prot (release 56.9)	Link to BlastX Result : Swiss-Prot
sp_hit_id	Q54CU4
Definition	sp\|Q54CU4\|COLA_DICDI Colossin-A OS=Dictyostelium discoideum
Align length	36
Score (bit)	28.9
E-value	8.3
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944211\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_F05, 5' (181 letters) Database: uniprot_sprot.fasta 412,525 sequences; 148,809,765 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value sp\|Q54CU4\|COLA_DICDI Colossin-A OS=Dictyostelium discoideum GN=c... 29 8.3 >sp\|Q54CU4\|COLA_DICDI Colossin-A OS=Dictyostelium discoideum GN=colA PE=4 SV=1 Length = 11103 Score = 28.9 bits (63), Expect = 8.3 Identities = 13/36 (36%), Positives = 21/36 (58%) Frame = -3 Query: 110 GYITKMSIGIGCDRNSNGALKRKKSSIYSRKCVT 3 GY TK+S+G D N++G+ + K ++ S VT Sbjct: 1141 GYTTKLSVGQFIWVDSNNDGSFDKSKENLLSNTLVT 1176
TrEMBL (release 39.9)	Link to BlastX Result : TrEMBL
tr_hit_id	Q4RMQ1
Definition	tr\|Q4RMQ1\|Q4RMQ1_TETNG Chromosome 10 SCAF15019, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis
Align length	40
Score (bit)	32.7
E-value	9.5
Report	BLASTX 2.2.19 [Nov-02-2008] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= DK944211\|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_F05, 5' (181 letters) Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value tr\|Q4RMQ1\|Q4RMQ1_TETNG Chromosome 10 SCAF15019, whole genome sho... 33 9.5 >tr\|Q4RMQ1\|Q4RMQ1_TETNG Chromosome 10 SCAF15019, whole genome shotgun sequence. (Fragment) OS=Tetraodon nigroviridis GN=GSTENG00031928001 PE=4 SV=1 Length = 809 Score = 32.7 bits (73), Expect = 9.5 Identities = 13/40 (32%), Positives = 24/40 (60%) Frame = +3 Query: 36 LPF*CTITISVTLANLPDRHFCNVPISGEYQYVSGFVQKK 155 LP +++ NL + HF +P++G ++++G VQKK Sbjct: 534 LPLGVFSEVNLARLNLRNNHFLQIPVAGVLEHLTGLVQKK 573