DK944216 |
Clone id |
YMU02A01NGRL0005_F11 |
Library |
YMU02 |
Length |
460 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_F11. 5' end sequence. |
Accession |
DK944216 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
- |
Sequence |
TATTGACATACGCATGCTTGCAGAAAAATTGAACATGGACTATGATGATGCAGAGCGGTG GATTGTCAACCTGATTAGGAATGCCCGTCTCGATACCATGATCGACTCTAAGATGGGGAC TGTTGTAATGGGTACTCAGCATACCAACGTGTACGAGCAAATTATTGAGACAACTAAGCA ACTTTCTGTTCGGAGCTACATGCTAGCGAATGGTGTTGTTGCTGCAGCTGCAGCTACTCA AGGTTACAGCCGATAAGTCTGCATTTGTGTGAAAGGAAGGACAAAGAGGGTAGCCACTTT GTGCGTCTTGTAATGCAGTCACCTTGGAGTTTTATCTCATCAAATGATCCAATGGCTCTA TCACTTTTATCACTTTTAGATCCAAAAGGGGTTCATATTCTACATGAGTGTATCTTGTGT TTGAGGCATTGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
Q641X8 |
Definition |
sp|Q641X8|EIF3E_RAT Eukaryotic translation initiation factor 3 subunit E OS=Rattus norvegicus |
Align length |
69 |
Score (bit) |
90.5 |
E-value |
3.0e-18 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9TXR1 |
Definition |
tr|A9TXR1|A9TXR1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
68 |
Score (bit) |
110.0 |
E-value |
4.0e-23 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944216|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_F11, 5' (431 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9TXR1|A9TXR1_PHYPA Predicted protein OS=Physcomitrella paten... 110 4e-23 tr|A9SFG7|A9SFG7_PHYPA Predicted protein OS=Physcomitrella paten... 104 2e-21 tr|B7SWI5|B7SWI5_APLKU eIF3e OS=Aplysia kurodai PE=2 SV=1 100 6e-20 tr|B6M5U0|B6M5U0_BRAFL Putative uncharacterized protein OS=Branc... 93 8e-18 tr|B6M5S4|B6M5S4_BRAFL Putative uncharacterized protein OS=Branc... 93 8e-18 tr|B6TRV3|B6TRV3_MAIZE Eukaryotic translation initiation factor ... 91 2e-17 tr|B4FDY7|B4FDY7_MAIZE Putative uncharacterized protein OS=Zea m... 91 2e-17 tr|Q9CT23|Q9CT23_MOUSE Putative uncharacterized protein (Fragmen... 91 4e-17 tr|Q3UIG0|Q3UIG0_MOUSE Putative uncharacterized protein OS=Mus m... 91 4e-17 tr|Q8GVI0|Q8GVI0_ORYSJ Os07g0222300 protein OS=Oryza sativa subs... 91 4e-17 tr|A3BHV6|A3BHV6_ORYSJ Putative uncharacterized protein OS=Oryza... 91 4e-17 tr|A0MLU6|A0MLU6_ORYSI Putative uncharacterized protein OS=Oryza... 91 4e-17 tr|A0MLT8|A0MLT8_ORYSJ Eukaryotic initiation factor 3e OS=Oryza ... 91 4e-17 tr|A6MKF5|A6MKF5_CALJA Eukaryotic translation initiation factor ... 91 4e-17 tr|Q6IAX5|Q6IAX5_HUMAN EIF3S6 protein OS=Homo sapiens GN=EIF3S6 ... 91 4e-17 tr|Q6FG33|Q6FG33_HUMAN EIF3S6 protein (Fragment) OS=Homo sapiens... 91 4e-17 tr|B3KW56|B3KW56_HUMAN cDNA FLJ42184 fis, clone THYMU2031994, hi... 91 4e-17 tr|B7FIL5|B7FIL5_MEDTR Putative uncharacterized protein OS=Medic... 89 8e-17 tr|A9PHY6|A9PHY6_POPTR Putative uncharacterized protein OS=Popul... 89 8e-17 tr|Q4T4X5|Q4T4X5_TETNG Chromosome undetermined SCAF9508, whole g... 89 1e-16 tr|B8LLS1|B8LLS1_PICSI Putative uncharacterized protein OS=Picea... 89 1e-16 tr|B2R806|B2R806_HUMAN cDNA, FLJ93685, highly similar to Homo sa... 89 1e-16 tr|A8JGK5|A8JGK5_CHLRE Eukaryotic initiation factor OS=Chlamydom... 88 2e-16 tr|A7PWK9|A7PWK9_VITVI Chromosome chr8 scaffold_34, whole genome... 87 3e-16 tr|A2I3X8|A2I3X8_MACHI Putative eukaryotic translation initiatio... 87 3e-16 tr|Q69W37|Q69W37_ORYSJ Os07g0167000 protein OS=Oryza sativa subs... 86 7e-16 tr|Q69W36|Q69W36_ORYSJ Putative eIF3e (Putative uncharacterized ... 86 7e-16 tr|A2YII7|A2YII7_ORYSI Putative uncharacterized protein OS=Oryza... 86 7e-16 tr|Q5C2H1|Q5C2H1_SCHJA SJCHGC05239 protein (Fragment) OS=Schisto... 86 1e-15 tr|Q9M2L8|Q9M2L8_ARATH Translation initiation factor 3-like prot... 85 2e-15
>tr|A9TXR1|A9TXR1_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_199296 PE=4 SV=1 Length = 440
Score = 110 bits (275), Expect = 4e-23 Identities = 55/68 (80%), Positives = 60/68 (88%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 IDI ML++KLNM+YDDAERWIVNLIRNARLD IDSKMGTVVMGTQ+ N+YEQIIE TK Sbjct: 356 IDICMLSQKLNMNYDDAERWIVNLIRNARLDAKIDSKMGTVVMGTQYPNIYEQIIEKTKV 415
Query: 182 LSVRSYML 205 LS RSY L Sbjct: 416 LSQRSYAL 423
>tr|A9SFG7|A9SFG7_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_106353 PE=4 SV=1 Length = 440
Score = 104 bits (260), Expect = 2e-21 Identities = 52/70 (74%), Positives = 57/70 (81%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 IDI ML++KLNM+YDDA RWI NLIRNARLD IDSKMGTVVMGTQ N+YEQIIE TK Sbjct: 356 IDIGMLSQKLNMNYDDAARWIANLIRNARLDAKIDSKMGTVVMGTQSPNIYEQIIEKTKV 415
Query: 182 LSVRSYMLAN 211 L RSY L + Sbjct: 416 LGQRSYALTS 425
>tr|B7SWI5|B7SWI5_APLKU eIF3e OS=Aplysia kurodai PE=2 SV=1 Length = 438
Score = 99.8 bits (247), Expect = 6e-20 Identities = 50/69 (72%), Positives = 57/69 (82%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 I I MLAEKLNM DDAE+WIVNLIRNARLD IDSK+G VVMGTQ + Y+Q+IE TK Sbjct: 350 ISINMLAEKLNMSPDDAEKWIVNLIRNARLDAKIDSKLGHVVMGTQAVSPYQQVIEKTKN 409
Query: 182 LSVRSYMLA 208 LS+RS+MLA Sbjct: 410 LSMRSHMLA 418
>tr|B6M5U0|B6M5U0_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_122083 PE=4 SV=1 Length = 394
Score = 92.8 bits (229), Expect = 8e-18 Identities = 48/68 (70%), Positives = 54/68 (79%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 I I MLAEKLNM D+AERWIVNLIRNARLD IDSK+G VVMGTQ + Y+Q+IE TK Sbjct: 307 ISISMLAEKLNMTPDEAERWIVNLIRNARLDAKIDSKLGHVVMGTQAISPYQQVIEKTKG 366
Query: 182 LSVRSYML 205 L+ RS ML Sbjct: 367 LAFRSQML 374
>tr|B6M5S4|B6M5S4_BRAFL Putative uncharacterized protein OS=Branchiostoma floridae GN=BRAFLDRAFT_114473 PE=4 SV=1 Length = 436
Score = 92.8 bits (229), Expect = 8e-18 Identities = 48/68 (70%), Positives = 54/68 (79%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 I I MLAEKLNM D+AERWIVNLIRNARLD IDSK+G VVMGTQ + Y+Q+IE TK Sbjct: 349 ISISMLAEKLNMTPDEAERWIVNLIRNARLDAKIDSKLGHVVMGTQAISPYQQVIEKTKG 408
Query: 182 LSVRSYML 205 L+ RS ML Sbjct: 409 LAFRSQML 416
>tr|B6TRV3|B6TRV3_MAIZE Eukaryotic translation initiation factor 3 subunit 6 OS=Zea mays PE=2 SV=1 Length = 436
Score = 91.3 bits (225), Expect = 2e-17 Identities = 41/69 (59%), Positives = 57/69 (82%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 IDI ML++KLNM YD+AE WI+NL+R+++LD IDS GT++M T H NV+EQI+E+ K Sbjct: 356 IDISMLSQKLNMSYDEAELWIMNLVRSSKLDARIDSVSGTLIMTTNHVNVHEQIVESLKG 415
Query: 182 LSVRSYMLA 208 L++R+YMLA Sbjct: 416 LNMRTYMLA 424
>tr|B4FDY7|B4FDY7_MAIZE Putative uncharacterized protein OS=Zea mays PE=2 SV=1 Length = 436
Score = 91.3 bits (225), Expect = 2e-17 Identities = 42/69 (60%), Positives = 57/69 (82%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 IDI MLA++LNM YD+AE WI+NL+R+++LD IDS GT++M T H NV+EQIIE+ K Sbjct: 356 IDISMLAQRLNMSYDEAELWIMNLVRSSKLDARIDSVSGTLIMTTNHINVHEQIIESMKG 415
Query: 182 LSVRSYMLA 208 L++R+YMLA Sbjct: 416 LNMRTYMLA 424
>tr|Q9CT23|Q9CT23_MOUSE Putative uncharacterized protein (Fragment) OS=Mus musculus GN=Eif3e PE=2 SV=1 Length = 422
Score = 90.5 bits (223), Expect = 4e-17 Identities = 46/69 (66%), Positives = 53/69 (76%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 I I MLA+KLNM ++AERWIVNLIRNARLD IDSK+G VVMG + Y+Q+IE TK Sbjct: 351 ISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKS 410
Query: 182 LSVRSYMLA 208 LS RS MLA Sbjct: 411 LSFRSQMLA 419
>tr|Q3UIG0|Q3UIG0_MOUSE Putative uncharacterized protein OS=Mus musculus GN=Eif3e PE=2 SV=1 Length = 445
Score = 90.5 bits (223), Expect = 4e-17 Identities = 46/69 (66%), Positives = 53/69 (76%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 I I MLA+KLNM ++AERWIVNLIRNARLD IDSK+G VVMG + Y+Q+IE TK Sbjct: 351 ISINMLADKLNMTPEEAERWIVNLIRNARLDAKIDSKLGHVVMGNNAVSPYQQVIEKTKS 410
Query: 182 LSVRSYMLA 208 LS RS MLA Sbjct: 411 LSFRSQMLA 419
>tr|Q8GVI0|Q8GVI0_ORYSJ Os07g0222300 protein OS=Oryza sativa subsp. japonica GN=P0592C06.125 PE=4 SV=1 Length = 439
Score = 90.5 bits (223), Expect = 4e-17 Identities = 39/69 (56%), Positives = 57/69 (82%) Frame = +2
Query: 2 IDIRMLAEKLNMDYDDAERWIVNLIRNARLDTMIDSKMGTVVMGTQHTNVYEQIIETTKQ 181 IDI ML++KLNM YD+AE WI+NL+RN++LD IDS GT++M T H N++EQ+IE+ K Sbjct: 356 IDIGMLSQKLNMSYDEAELWIMNLVRNSKLDAKIDSVSGTLIMTTNHVNIHEQVIESLKN 415
Query: 182 LSVRSYMLA 208 L++R+++LA Sbjct: 416 LNMRTFLLA 424
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