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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944217
Clone id YMU02A01NGRL0005_F12
Library
Length 325
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_F12. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGCTGTGGATCAGGCTCCAGGAGTTCGATATCCCGTGGTTGTACGATTTGAGAAAGTCA
ACTATGCCGGTGTGTCTACGAACAACTACGCCTTGGATGAGATTTGTGCTGTGTAGGGAG
CGCAGAAGCACTACCATTCCCTAGTGTAGATCTTCCTGTAACCTTCCATGTGCTGTAATT
ATATTCGAGGCTAAGTCATGACGTCTCTTCTTCAATTTGTGACGTCCCCATAATTAAACT
GTGCCTCCAACTATTCTGTGAGATATATTTTGCTGGGGAAGAGGAGGCTTTGCACCGAAA
AAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P13194
Definition sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV, chloroplastic OS=Hordeum vulgare
Align length 33
Score (bit) 61.6
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944217|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_F12, 5'
         (297 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV, c...    62   1e-09
sp|Q41229|PSAEB_NICSY Photosystem I reaction center subunit IV B...    61   2e-09
sp|P12354|PSAE_SPIOL Photosystem I reaction center subunit IV, c...    60   3e-09
sp|Q41228|PSAEA_NICSY Photosystem I reaction center subunit IV A...    59   6e-09
sp|Q9S714|PSAE2_ARATH Photosystem I reaction center subunit IV B...    59   6e-09
sp|Q9S831|PSAE1_ARATH Photosystem I reaction center subunit IV A...    59   6e-09
sp|P12352|PSAE_CHLRE Photosystem I reaction center subunit IV, c...    57   2e-08
sp|P58575|PSAE_ANASP Photosystem I reaction center subunit IV OS...    55   1e-07
sp|P31090|PSAE_ANAVT Photosystem I reaction center subunit IV OS...    54   3e-07
sp|Q9WWP1|PSAE_NOSS8 Photosystem I reaction center subunit IV OS...    53   4e-07
sp|O78515|PSAE_GUITH Photosystem I reaction center subunit IV OS...    53   4e-07
sp|P0A423|PSAE_THEEB Photosystem I reaction center subunit IV OS...    52   7e-07
sp|P0A424|PSAE_SYNEN Photosystem I reaction center subunit IV OS...    52   7e-07
sp|A0T0F3|PSAE_PHATR Photosystem I reaction center subunit IV OS...    52   7e-07
sp|O19924|PSAE_CYACA Photosystem I reaction center subunit IV OS...    52   9e-07
sp|P48114|PSAE_CYAPA Photosystem I reaction center subunit IV OS...    51   2e-06
sp|P49482|PSAE_ODOSI Photosystem I reaction center subunit IV OS...    50   3e-06
sp|Q9ZFU3|PSAE_MASLA Photosystem I reaction center subunit IV OS...    50   5e-06
sp|P23809|PSAE_FREDI Photosystem I reaction center subunit IV OS...    49   1e-05
sp|Q117D3|PSAE_TRIEI Photosystem I reaction center subunit IV OS...    47   3e-05
sp|Q7NFW6|PSAE_GLOVI Photosystem I reaction center subunit IV OS...    45   9e-05
sp|P23077|PSAE_SYNP6 Photosystem I reaction center subunit IV OS...    45   1e-04
sp|Q31NL7|PSAE_SYNE7 Photosystem I reaction center subunit IV OS...    45   1e-04
sp|Q3AWF7|PSAE_SYNS9 Photosystem I reaction center subunit IV OS...    43   6e-04
sp|Q2JXQ1|PSAE_SYNJA Photosystem I reaction center subunit IV OS...    43   6e-04
sp|Q1XDG0|PSAE_PORYE Photosystem I reaction center subunit IV OS...    43   6e-04
sp|P69404|PSAE_PORUM Photosystem I reaction center subunit IV OS...    43   6e-04
sp|P69403|PSAE_PORPU Photosystem I reaction center subunit IV OS...    43   6e-04
sp|Q0ICP0|PSAE_SYNS3 Photosystem I reaction center subunit IV OS...    42   7e-04
sp|Q3AMB5|PSAE_SYNSC Photosystem I reaction center subunit IV OS...    42   0.001

>sp|P13194|PSAE_HORVU Photosystem I reaction center subunit IV,
           chloroplastic OS=Hordeum vulgare GN=PSAE PE=1 SV=2
          Length = 147

 Score = 61.6 bits (148), Expect = 1e-09
 Identities = 29/33 (87%), Positives = 29/33 (87%)
 Frame = +3

Query: 6   VDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           VDQ P  RYPVVVRF KVNYAGVSTNNYALDEI
Sbjct: 110 VDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEI 142


>sp|Q41229|PSAEB_NICSY Photosystem I reaction center subunit IV B,
           chloroplastic OS=Nicotiana sylvestris GN=PSAEB PE=1 SV=1
          Length = 143

 Score = 60.8 bits (146), Expect = 2e-09
 Identities = 28/34 (82%), Positives = 29/34 (85%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           AVDQ P  RYPVVVRF KVNYA VSTNNYALDE+
Sbjct: 106 AVDQDPNTRYPVVVRFNKVNYANVSTNNYALDEV 139


>sp|P12354|PSAE_SPIOL Photosystem I reaction center subunit IV,
           chloroplastic OS=Spinacia oleracea GN=PSAE-1 PE=1 SV=1
          Length = 125

 Score = 60.5 bits (145), Expect = 3e-09
 Identities = 29/34 (85%), Positives = 29/34 (85%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           AVDQ P  RYPVVVRF KVNYA VSTNNYALDEI
Sbjct: 88  AVDQDPKTRYPVVVRFNKVNYANVSTNNYALDEI 121


>sp|Q41228|PSAEA_NICSY Photosystem I reaction center subunit IV A,
           chloroplastic OS=Nicotiana sylvestris GN=PSAEA PE=1 SV=1
          Length = 141

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 28/34 (82%), Positives = 28/34 (82%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           A DQ P  RYPVVVRF KVNYA VSTNNYALDEI
Sbjct: 104 ACDQDPNTRYPVVVRFNKVNYANVSTNNYALDEI 137


>sp|Q9S714|PSAE2_ARATH Photosystem I reaction center subunit IV B,
           chloroplastic OS=Arabidopsis thaliana GN=PSAE2 PE=1 SV=1
          Length = 145

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           AVDQ P  RYPVVVRF KVNYA +STNNYALDE+
Sbjct: 108 AVDQDPKTRYPVVVRFAKVNYANISTNNYALDEV 141


>sp|Q9S831|PSAE1_ARATH Photosystem I reaction center subunit IV A,
           chloroplastic OS=Arabidopsis thaliana GN=PSAE1 PE=1 SV=1
          Length = 143

 Score = 59.3 bits (142), Expect = 6e-09
 Identities = 27/34 (79%), Positives = 29/34 (85%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           AVDQ P  RYPVVVRF KVNYA +STNNYALDE+
Sbjct: 105 AVDQDPKTRYPVVVRFAKVNYANISTNNYALDEV 138


>sp|P12352|PSAE_CHLRE Photosystem I reaction center subunit IV,
           chloroplastic OS=Chlamydomonas reinhardtii GN=PSAE PE=1
           SV=1
          Length = 97

 Score = 57.4 bits (137), Expect = 2e-08
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICA 110
           +VDQ+ GVRYPVVVRFE  NYAGV+TNNYALDE+ A
Sbjct: 61  SVDQS-GVRYPVVVRFENQNYAGVTTNNYALDEVVA 95


>sp|P58575|PSAE_ANASP Photosystem I reaction center subunit IV
           OS=Anabaena sp. (strain PCC 7120) GN=psaE PE=3 SV=1
          Length = 70

 Score = 54.7 bits (130), Expect = 1e-07
 Identities = 23/37 (62%), Positives = 34/37 (91%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICAV 113
           +VDQ+ G++YPV+VRF+KVNYAG++TNN+A+DE+  V
Sbjct: 26  SVDQS-GIKYPVIVRFDKVNYAGINTNNFAVDELIEV 61


>sp|P31090|PSAE_ANAVT Photosystem I reaction center subunit IV
           OS=Anabaena variabilis (strain ATCC 29413 / PCC 7937)
           GN=psaE PE=1 SV=3
          Length = 71

 Score = 53.5 bits (127), Expect = 3e-07
 Identities = 22/37 (59%), Positives = 34/37 (91%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICAV 113
           +VDQ+ G++YPV+VRF+KVNY+G++TNN+A+DE+  V
Sbjct: 26  SVDQS-GIKYPVIVRFDKVNYSGINTNNFAVDELIEV 61


>sp|Q9WWP1|PSAE_NOSS8 Photosystem I reaction center subunit IV
           OS=Nostoc sp. (strain PCC 8009) GN=psaE PE=1 SV=1
          Length = 70

 Score = 53.1 bits (126), Expect = 4e-07
 Identities = 23/37 (62%), Positives = 33/37 (89%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICAV 113
           +VDQ+ G++YPV+VRFEKVNY+G++TNN+A DE+  V
Sbjct: 26  SVDQS-GIKYPVIVRFEKVNYSGINTNNFAEDELVEV 61
tr_hit_id A9TVA9
Definition tr|A9TVA9|A9TVA9_PHYPA Predicted protein (Fragment) OS=Physcomitrella patens subsp. patens
Align length 34
Score (bit) 65.9
E-value 1.0e-09
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944217|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_F12, 5'
         (297 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9TVA9|A9TVA9_PHYPA Predicted protein (Fragment) OS=Physcomit...    66   1e-09
tr|A9TU20|A9TU20_PHYPA Predicted protein (Fragment) OS=Physcomit...    66   1e-09
tr|A9SPD7|A9SPD7_PHYPA Predicted protein OS=Physcomitrella paten...    66   1e-09
tr|B6TH55|B6TH55_MAIZE Photosystem I reaction center subunit IV ...    63   8e-09
tr|B6SPC1|B6SPC1_MAIZE Photosystem I reaction center subunit IV ...    63   8e-09
tr|B6TEI9|B6TEI9_MAIZE Photosystem I reaction center subunit IV ...    62   1e-08
tr|B6T097|B6T097_MAIZE Photosystem I reaction center subunit IV ...    62   1e-08
tr|A4RTE0|A4RTE0_OSTLU Photosystem I reaction center subunit IV,...    62   1e-08
tr|Q6Z3V7|Q6Z3V7_ORYSJ Putative Photosystem I reaction center su...    62   2e-08
tr|Q0D6V8|Q0D6V8_ORYSJ Os07g0435300 protein (Fragment) OS=Oryza ...    62   2e-08
tr|A2YKQ6|A2YKQ6_ORYSI Putative uncharacterized protein OS=Oryza...    62   2e-08
tr|Q01DV3|Q01DV3_OSTTA PsaE undefined product (IC) OS=Ostreococc...    61   2e-08
tr|B7FHF6|B7FHF6_MEDTR Putative uncharacterized protein OS=Medic...    61   2e-08
tr|A9P1Q8|A9P1Q8_PICSI Putative uncharacterized protein OS=Picea...    61   3e-08
tr|A1IW05|A1IW05_9LAMI Subunit IV of photosystem I (PSI-E) (Frag...    60   4e-08
tr|Q8RVJ8|Q8RVJ8_POPCA Putative photosystem I reaction centre su...    60   7e-08
tr|B7FME3|B7FME3_MEDTR Putative uncharacterized protein OS=Medic...    60   7e-08
tr|A9PCY7|A9PCY7_POPTR Putative uncharacterized protein OS=Popul...    60   7e-08
tr|A9NP22|A9NP22_PICSI Putative uncharacterized protein OS=Picea...    60   7e-08
tr|A8C1A6|A8C1A6_CITSI PS1 reaction center subunit III OS=Citrus...    60   7e-08
tr|A8C198|A8C198_CITSI PSI reaction center subunit III OS=Citrus...    60   7e-08
tr|Q9FDY5|Q9FDY5_ARATH Putative photosystem I subunit PSI-E (Fra...    59   9e-08
tr|Q8LC58|Q8LC58_ARATH Photosystem I reaction center subunit IV ...    59   9e-08
tr|Q8H127|Q8H127_ARATH Putative photosystem I subunit PSI-E prot...    59   9e-08
tr|Q7FY22|Q7FY22_ARATH AT4g28750 OS=Arabidopsis thaliana GN=AT4g...    59   9e-08
tr|Q6DT49|Q6DT49_ARALP AT4G28750 (Fragment) OS=Arabidopsis lyrat...    59   9e-08
tr|A8ICV4|A8ICV4_CHLRE Photosystem I 8.1 kDa reaction center sub...    57   3e-07
tr|Q9ST33|Q9ST33_ARATH Photosystem I subunit PSI-E (Fragment) OS...    56   8e-07
tr|Q2IA23|Q2IA23_PAVLU Chloroplast psaEb (Fragment) OS=Pavlova l...    56   8e-07
tr|A5LGM1|A5LGM1_POTDI Putative uncharacterized protein (Fragmen...    56   8e-07

>tr|A9TVA9|A9TVA9_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_39042 PE=4 SV=1
          Length = 78

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           AVDQAPGVRYPVVVRF+KVNYAGVSTNNY+ DE+
Sbjct: 44  AVDQAPGVRYPVVVRFDKVNYAGVSTNNYSPDEL 77


>tr|A9TU20|A9TU20_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_39045 PE=4 SV=1
          Length = 79

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           AVDQAPGVRYPVVVRF+KVNYAGVSTNNY+ DE+
Sbjct: 45  AVDQAPGVRYPVVVRFDKVNYAGVSTNNYSPDEL 78


>tr|A9SPD7|A9SPD7_PHYPA Predicted protein OS=Physcomitrella patens
           subsp. patens GN=PHYPADRAFT_133111 PE=4 SV=1
          Length = 95

 Score = 65.9 bits (159), Expect = 1e-09
 Identities = 30/34 (88%), Positives = 33/34 (97%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           AVDQAPGVRYPVVVRF+KVNYAGVSTNNY+ DE+
Sbjct: 58  AVDQAPGVRYPVVVRFDKVNYAGVSTNNYSPDEL 91


>tr|B6TH55|B6TH55_MAIZE Photosystem I reaction center subunit IV A
           OS=Zea mays PE=2 SV=1
          Length = 139

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/36 (83%), Positives = 30/36 (83%)
 Frame = +3

Query: 6   VDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICAV 113
           VDQ P  RYPVVVRF KVNYAGVSTNNYALDEI  V
Sbjct: 103 VDQDPNTRYPVVVRFNKVNYAGVSTNNYALDEILEV 138


>tr|B6SPC1|B6SPC1_MAIZE Photosystem I reaction center subunit IV A
           OS=Zea mays PE=2 SV=1
          Length = 139

 Score = 62.8 bits (151), Expect = 8e-09
 Identities = 30/36 (83%), Positives = 30/36 (83%)
 Frame = +3

Query: 6   VDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICAV 113
           VDQ P  RYPVVVRF KVNYAGVSTNNYALDEI  V
Sbjct: 103 VDQDPNTRYPVVVRFNKVNYAGVSTNNYALDEILEV 138


>tr|B6TEI9|B6TEI9_MAIZE Photosystem I reaction center subunit IV A
           OS=Zea mays PE=2 SV=1
          Length = 136

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/36 (80%), Positives = 30/36 (83%)
 Frame = +3

Query: 6   VDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICAV 113
           VDQ P  RYPVVVRF KVNYAGVSTNNYALDE+  V
Sbjct: 100 VDQDPNTRYPVVVRFNKVNYAGVSTNNYALDEVLEV 135


>tr|B6T097|B6T097_MAIZE Photosystem I reaction center subunit IV A
           OS=Zea mays PE=4 SV=1
          Length = 105

 Score = 62.4 bits (150), Expect = 1e-08
 Identities = 29/36 (80%), Positives = 30/36 (83%)
 Frame = +3

Query: 6   VDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEICAV 113
           VDQ P  RYPVVVRF KVNYAGVSTNNYALDE+  V
Sbjct: 69  VDQDPNTRYPVVVRFNKVNYAGVSTNNYALDEVLEV 104


>tr|A4RTE0|A4RTE0_OSTLU Photosystem I reaction center subunit IV,
           probable OS=Ostreococcus lucimarinus (strain CCE9901)
           GN=PsaE PE=4 SV=1
          Length = 107

 Score = 62.0 bits (149), Expect = 1e-08
 Identities = 31/34 (91%), Positives = 33/34 (97%)
 Frame = +3

Query: 3   AVDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           +VDQ+ GVRYPVVVRFEKVNYAGVSTNNYALDEI
Sbjct: 73  SVDQS-GVRYPVVVRFEKVNYAGVSTNNYALDEI 105


>tr|Q6Z3V7|Q6Z3V7_ORYSJ Putative Photosystem I reaction center
           subunit IV (Putative uncharacterized protein) OS=Oryza
           sativa subsp. japonica GN=P0673E01.25 PE=4 SV=1
          Length = 149

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 29/33 (87%), Positives = 29/33 (87%)
 Frame = +3

Query: 6   VDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           VDQ P  RYPVVVRF KVNYAGVSTNNYALDEI
Sbjct: 113 VDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEI 145


>tr|Q0D6V8|Q0D6V8_ORYSJ Os07g0435300 protein (Fragment) OS=Oryza
           sativa subsp. japonica GN=Os07g0435300 PE=4 SV=1
          Length = 79

 Score = 61.6 bits (148), Expect = 2e-08
 Identities = 29/33 (87%), Positives = 29/33 (87%)
 Frame = +3

Query: 6   VDQAPGVRYPVVVRFEKVNYAGVSTNNYALDEI 104
           VDQ P  RYPVVVRF KVNYAGVSTNNYALDEI
Sbjct: 43  VDQDPNTRYPVVVRFAKVNYAGVSTNNYALDEI 75