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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944219
Clone id YMU02A01NGRL0005_F14
Library
Length 162
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_F14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GGTCTCTTGGTGACTGCATGTATCACTGGCTGTCAGCTGGCATTTGGCGGGTAGTTTGTA
CCGATCCTTGGTTTTCAACCAAGGCCAAAACTTTACCAAAAAGCTTCAAAGTCAGCAACA
GGACACACGGGAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q5BK48
Definition sp|Q5BK48|TTC5_RAT Tetratricopeptide repeat protein 5 OS=Rattus norvegicus
Align length 19
Score (bit) 29.3
E-value 6.4
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944219|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_F14, 5'
         (131 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q5BK48|TTC5_RAT Tetratricopeptide repeat protein 5 OS=Rattus ...    29   6.4  
sp|Q99LG4|TTC5_MOUSE Tetratricopeptide repeat protein 5 OS=Mus m...    29   6.4  
sp|Q0P5H9|TTC5_BOVIN Tetratricopeptide repeat protein 5 OS=Bos t...    29   6.4  

>sp|Q5BK48|TTC5_RAT Tetratricopeptide repeat protein 5 OS=Rattus
           norvegicus GN=Ttc5 PE=2 SV=1
          Length = 440

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 35  SWHLAGSLYRSLVFNQGQN 91
           SW++ G+ Y SL FN GQN
Sbjct: 181 SWYILGNAYLSLYFNTGQN 199


>sp|Q99LG4|TTC5_MOUSE Tetratricopeptide repeat protein 5 OS=Mus
           musculus GN=Ttc5 PE=1 SV=1
          Length = 440

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 35  SWHLAGSLYRSLVFNQGQN 91
           SW++ G+ Y SL FN GQN
Sbjct: 181 SWYILGNAYLSLYFNTGQN 199


>sp|Q0P5H9|TTC5_BOVIN Tetratricopeptide repeat protein 5 OS=Bos
           taurus GN=TTC5 PE=2 SV=1
          Length = 440

 Score = 29.3 bits (64), Expect = 6.4
 Identities = 11/19 (57%), Positives = 14/19 (73%)
 Frame = +2

Query: 35  SWHLAGSLYRSLVFNQGQN 91
           SW++ G+ Y SL FN GQN
Sbjct: 181 SWYILGNAYLSLYFNTGQN 199
tr_hit_id -
Definition No hits.
Align length -
Score (bit) -
E-value -
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944219|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_F14, 5'
         (131 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done

 ***** No hits found ******