DK944233 |
Clone id |
YMU02A01NGRL0005_G06 |
Library |
YMU02 |
Length |
618 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_G06. 5' end sequence. |
Accession |
DK944233 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL1005Contig1 |
Sequence |
ACCCTAAGTGAACTAGCAAGACTTTGCAATGGTCCATTTTAATTGAGCAAGCGGCACAAC TATGGCCTTCTTCTGCAGAAGCGCGTTGCGAGGCAAGGGCAGAACGCTCCAGGATGCACT GCTAAGAACATCAAAGCCGGCATCTCATCAAGGGCTCGCATCGGCCCCCTCGGAGTCTGG AGGCCATTTTTCTGCAAGAGCATTTTCTTCTCTCTTATCGAAATGGCAAGAAAGCGGGAA ACCCATAGGTAAATCGAGCCACGGCCCGAGCCTTCAATCGTTCCCCTTACATCATCCTCT TTCTGCGCATCTCATTTCTGCCCAACAGGTGAGGCATGTGTATGTGGAGGTCATCGATAA TGACATTGATGATGCCATCAAGGTGTACAAGAGGAAGTTGAACAATTGTAAAGTAGAAGA CAAGCTCAAAACAAAGCAGTACTTTGTCAAGCCATGCGAGCGCCGCAAGCTTGCCAAACA CTACAAGAAGCTCAACCGTGCGAAAAGGGAGCTGTTTGACAAGCTTGATACCGCCAGGCA CCACATGGAAACGGTTCGAGAAACCCATAGGCGAAACAAGCAGGAGCGAAAAGAGGCCAA AGCCGCCGCTGCTGCTGC |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
A0L8J0 |
Definition |
sp|A0L8J0|RS21_MAGSM 30S ribosomal protein S21 OS=Magnetococcus sp. (strain MC-1) |
Align length |
59 |
Score (bit) |
44.3 |
E-value |
0.0005 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
A9SDN9 |
Definition |
tr|A9SDN9|A9SDN9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens |
Align length |
79 |
Score (bit) |
46.6 |
E-value |
0.001 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944233|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_G06, 5' (601 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|A9SDN9|A9SDN9_PHYPA Predicted protein OS=Physcomitrella paten... 47 0.001 tr|B5J3P7|B5J3P7_9RHOB Ribosomal protein S21 OS=Octadecabacter a... 42 0.021 tr|B8FMP5|B8FMP5_9DELT Ribosomal protein S21 OS=Desulfatibacillu... 42 0.027 tr|B6AWC5|B6AWC5_9RHOB Ribosomal protein S21 OS=Rhodobacterales ... 42 0.027 tr|A3XEA0|A3XEA0_9RHOB 30S ribosomal protein S21 OS=Roseobacter ... 42 0.027 tr|A6WRG1|A6WRG1_SHEB8 Phage integrase family protein OS=Shewane... 41 0.047 tr|Q1V1Y9|Q1V1Y9_9RICK 30S ribosomal protein S21 OS=Candidatus P... 41 0.061 tr|B6BQX0|B6BQX0_9RICK Ribosomal protein S21 OS=Candidatus Pelag... 41 0.061 tr|A9NSA1|A9NSA1_PICSI Putative uncharacterized protein OS=Picea... 40 0.10 tr|A9KZC4|A9KZC4_SHEB9 Integrase family protein OS=Shewanella ba... 40 0.14 tr|A2FHD4|A2FHD4_TRIVA Trichohyalin, putative OS=Trichomonas vag... 40 0.14 tr|Q1JW03|Q1JW03_DESAC 30S ribosomal protein S21 OS=Desulfuromon... 39 0.18 tr|B7RGU2|B7RGU2_9RHOB Ribosomal protein S21 OS=Roseobacter sp. ... 39 0.18 tr|A8ZTL4|A8ZTL4_DESOH Ribosomal protein S21 OS=Desulfococcus ol... 39 0.23 tr|Q2CA90|Q2CA90_9RHOB 30S ribosomal protein S21 OS=Oceanicola g... 39 0.23 tr|Q0FQQ8|Q0FQQ8_9RHOB 30S ribosomal protein S21 OS=Roseovarius ... 39 0.30 tr|B7QXT7|B7QXT7_9RHOB Ribosomal protein S21 OS=Ruegeria sp. R11... 39 0.30 tr|B6BBV8|B6BBV8_9RHOB Ribosomal protein S21 OS=Rhodobacterales ... 39 0.30 tr|B6AVW9|B6AVW9_9RHOB Ribosomal protein S21 OS=Rhodobacterales ... 39 0.30 tr|A9H447|A9H447_9RHOB 30S ribosomal protein S21 OS=Roseobacter ... 39 0.30 tr|A9FY80|A9FY80_9RHOB 30S ribosomal protein S21 OS=Phaeobacter ... 39 0.30 tr|A9EHY0|A9EHY0_9RHOB 30S ribosomal protein S21 OS=Phaeobacter ... 39 0.30 tr|A9DWI9|A9DWI9_9RHOB 30S ribosomal protein S21 OS=Oceanibulbus... 39 0.30 tr|A6DW93|A6DW93_9RHOB 30S ribosomal protein S21 OS=Roseovarius ... 39 0.30 tr|A4EWH4|A4EWH4_9RHOB 30S ribosomal protein S21 OS=Roseobacter ... 39 0.30 tr|A3XFS4|A3XFS4_9RHOB 30S ribosomal protein S21 OS=Roseobacter ... 39 0.30 tr|A3W5B2|A3W5B2_9RHOB 30S ribosomal protein S21 OS=Roseovarius ... 39 0.30 tr|A3SVA7|A3SVA7_9RHOB 30S ribosomal protein S21 OS=Sulfitobacte... 39 0.30 tr|A3SM82|A3SM82_9RHOB 30S ribosomal protein S21 OS=Roseovarius ... 39 0.30 tr|A3SG51|A3SG51_9RHOB 30S ribosomal protein S21 OS=Sulfitobacte... 39 0.30
>tr|A9SDN9|A9SDN9_PHYPA Predicted protein OS=Physcomitrella patens subsp. patens GN=PHYPADRAFT_164384 PE=4 SV=1 Length = 285
Score = 46.6 bits (109), Expect = 0.001 Identities = 26/79 (32%), Positives = 44/79 (55%) Frame = +2
Query: 323 QQVRHVYVEVIDNDIDDAIKVYKRKLNNCKVEDKLKTKQYFVKPCERRKLAKHYKKLNRA 502 QQ R V VEV ++D++ AI+ KR+L + L+ ++Y+ KP E + LA+ + A Sbjct: 166 QQTRTVMVEVTNDDLERAIRKMKRRLKDDNGIKLLREREYYRKPSELKVLARKERDKRIA 225
Query: 503 KRELFDKLDTARHHMETVR 559 K+E KL + ++R Sbjct: 226 KKEFRSKLKWITNRRSSIR 244
>tr|B5J3P7|B5J3P7_9RHOB Ribosomal protein S21 OS=Octadecabacter antarcticus 307 GN=OA307_4862 PE=4 SV=1 Length = 66
Score = 42.4 bits (98), Expect = 0.021 Identities = 23/62 (37%), Positives = 39/62 (62%) Frame = +2
Query: 344 VEVIDNDIDDAIKVYKRKLNNCKVEDKLKTKQYFVKPCERRKLAKHYKKLNRAKRELFDK 523 V V DN++D A++V K+KL + V ++K KQ+F KP E++ K + + RA++ K Sbjct: 3 VSVRDNNVDQALRVLKKKLQSEGVFQEMKLKQHFEKPSEKKAREKG-EAIRRARKLARKK 61
Query: 524 LD 529 L+ Sbjct: 62 LE 63
>tr|B8FMP5|B8FMP5_9DELT Ribosomal protein S21 OS=Desulfatibacillum alkenivorans AK-01 GN=Dalk_0203 PE=4 SV=1 Length = 70
Score = 42.0 bits (97), Expect = 0.027 Identities = 22/63 (34%), Positives = 40/63 (63%), Gaps = 2/63 (3%) Frame = +2
Query: 329 VRHVYVEVIDNDIDDAIKVYKRKLNNCKVEDKLKTKQYFVKPCE--RRKLAKHYKKLNRA 502 ++ + V+V DND++ A++V K+K+ N + +LK K+ + KP E RRK + ++L A Sbjct: 1 MKDLEVKVFDNDLEKAMRVLKKKIQNDGLFRRLKMKKAYEKPSESRRRKQRESVRRLRSA 60
Query: 503 KRE 511 R+ Sbjct: 61 ARK 63
>tr|B6AWC5|B6AWC5_9RHOB Ribosomal protein S21 OS=Rhodobacterales bacterium HTCC2083 GN=rpsU_1 PE=4 SV=1 Length = 66
Score = 42.0 bits (97), Expect = 0.027 Identities = 23/62 (37%), Positives = 38/62 (61%) Frame = +2
Query: 344 VEVIDNDIDDAIKVYKRKLNNCKVEDKLKTKQYFVKPCERRKLAKHYKKLNRAKRELFDK 523 V V DN++D A++V K+KL V ++K KQ+F KP E++ K + + RA++ K Sbjct: 3 VSVRDNNVDQALRVLKKKLQREGVFQEMKLKQHFEKPSEKKAREKG-EAIRRARKLARKK 61
Query: 524 LD 529 L+ Sbjct: 62 LE 63
>tr|A3XEA0|A3XEA0_9RHOB 30S ribosomal protein S21 OS=Roseobacter sp. MED193 GN=MED193_02585 PE=3 SV=1 Length = 66
Score = 42.0 bits (97), Expect = 0.027 Identities = 24/62 (38%), Positives = 39/62 (62%) Frame = +2
Query: 344 VEVIDNDIDDAIKVYKRKLNNCKVEDKLKTKQYFVKPCERRKLAKHYKKLNRAKRELFDK 523 V V DN+ID A++V K+KL V ++K K++F KP E+R L + + + RA++ K Sbjct: 3 VSVRDNNIDQALRVLKKKLQREGVFREMKLKEHFEKPSEKR-LREKGEAIRRARKLARKK 61
Query: 524 LD 529 L+ Sbjct: 62 LE 63
>tr|A6WRG1|A6WRG1_SHEB8 Phage integrase family protein OS=Shewanella baltica (strain OS185) GN=Shew185_3273 PE=4 SV=1 Length = 401
Score = 41.2 bits (95), Expect = 0.047 Identities = 27/88 (30%), Positives = 43/88 (48%), Gaps = 1/88 (1%) Frame = +2
Query: 191 SARAFSSLLSKWQESGKPIGKSSHGPSLQSFPLH-HPLSAHLISAQQVRHVYVEVIDNDI 367 +A S L +W ES + K+SH L+SF LH P HL + + H++++VI+ Sbjct: 96 TALTMSELFMQWYESYCVVNKTSHAEILRSFKLHVLPKIGHLPADKVSLHIWLDVIETKA 155
Query: 368 DDAIKVYKRKLNNCKVEDKLKTKQYFVK 451 + + R L N K K K+ +K Sbjct: 156 KTSPSIADRLLTNGKQLLKWGVKRQLLK 183
>tr|Q1V1Y9|Q1V1Y9_9RICK 30S ribosomal protein S21 OS=Candidatus Pelagibacter ubique HTCC1002 GN=PU1002_03441 PE=4 SV=1 Length = 64
Score = 40.8 bits (94), Expect = 0.061 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +2
Query: 344 VEVIDNDIDDAIKVYKRKLNNCKVEDKLKTKQYFVKPCERRKL-----AKHYKKLNRAKR 508 +EV DN+I+ A++V KRKL +K K + KP E++K K KKLN+ K Sbjct: 3 IEVKDNNIEQALRVLKRKLQRDGFFKVVKLKSVYEKPSEKKKRILQENIKRVKKLNKLKN 62
Query: 509 EL 514 + Sbjct: 63 RI 64
>tr|B6BQX0|B6BQX0_9RICK Ribosomal protein S21 OS=Candidatus Pelagibacter sp. HTCC7211 GN=rpsU PE=4 SV=1 Length = 64
Score = 40.8 bits (94), Expect = 0.061 Identities = 23/62 (37%), Positives = 34/62 (54%), Gaps = 5/62 (8%) Frame = +2
Query: 344 VEVIDNDIDDAIKVYKRKLNNCKVEDKLKTKQYFVKPCERRKL-----AKHYKKLNRAKR 508 +EV DN+I+ A++V KRKL +K K + KP E++K K KKLN+ K Sbjct: 3 IEVKDNNIEQALRVLKRKLQRDGFFKVIKLKNTYEKPSEKKKRILQENIKRVKKLNKLKN 62
Query: 509 EL 514 + Sbjct: 63 RI 64
>tr|A9NSA1|A9NSA1_PICSI Putative uncharacterized protein OS=Picea sitchensis PE=2 SV=1 Length = 166
Score = 40.0 bits (92), Expect = 0.10 Identities = 21/69 (30%), Positives = 41/69 (59%), Gaps = 1/69 (1%) Frame = +2
Query: 323 QQVRHVYVEVIDNDIDDAIKVYKRKLNNCKVEDKL-KTKQYFVKPCERRKLAKHYKKLNR 499 QQ+R + V+V+D +++ A++V +RK+ +E + K +Y +K E+R +A+ ++ Sbjct: 87 QQIRGIRVKVLDGNLERALQVLQRKMIGSGMERLIRKVPRYHIKDSEKRIMARKRRERKE 146
Query: 500 AKRELFDKL 526 EL KL Sbjct: 147 RSEELAGKL 155
>tr|A9KZC4|A9KZC4_SHEB9 Integrase family protein OS=Shewanella baltica (strain OS195) GN=Sbal195_3410 PE=4 SV=1 Length = 401
Score = 39.7 bits (91), Expect = 0.14 Identities = 27/88 (30%), Positives = 42/88 (47%), Gaps = 1/88 (1%) Frame = +2
Query: 191 SARAFSSLLSKWQESGKPIGKSSHGPSLQSFPLH-HPLSAHLISAQQVRHVYVEVIDNDI 367 +A S L +W ES K+SH L+SF LH P HL + + H++++VI+ Sbjct: 96 TALTMSELFMQWYESYCVANKTSHAEILRSFKLHVLPKIGHLPADKVSLHIWLDVIETKA 155
Query: 368 DDAIKVYKRKLNNCKVEDKLKTKQYFVK 451 + + R L N K K K+ +K Sbjct: 156 KTSPSIADRLLTNGKQLLKWGVKRQLLK 183
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