NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944239
Clone id YMU02A01NGRL0005_G13
Library
Length 224
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_G13. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
TTGTGAAGGTATCTGGAGTGTCTCTCCTTGCCCTTTTCAAGGAAAAGAAGGAGAAACCAA
GGTCTTAAGTTTTGAGAGGATATGTGAAGGTCCAGCAGGACTTGTACCTTATTGATTAGC
TTCCTGGGAATGTTCAGGAGAGATCATCACGAAAATTTTGTTAATCTCATGACATGAGCC
AGCTGCTTCTTTTCGAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P46297
Definition sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa
Align length 21
Score (bit) 42.7
E-value 0.0006
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944239|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_G13, 5'
         (195 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria anana...    43   6e-04
sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esul...    43   6e-04
sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis...    43   6e-04
sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis...    43   6e-04
sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces ...    41   0.002
sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces ...    41   0.002
sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces ...    41   0.002
sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabra...    41   0.002
sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora cra...    39   0.006
sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus fu...    39   0.006
sp|Q962Q7|RS23_SPOFR 40S ribosomal protein S23 OS=Spodoptera fru...    37   0.031
sp|Q6EV23|RS23_PAPDA 40S ribosomal protein S23 OS=Papilio dardan...    37   0.031
sp|Q8T3U2|RS23_DROME 40S ribosomal protein S23 OS=Drosophila mel...    37   0.031
sp|Q86FP7|RS23_DERVA 40S ribosomal protein S23 OS=Dermacentor va...    37   0.031
sp|Q9GRJ3|RS23_LUMRU 40S ribosomal protein S23 OS=Lumbricus rube...    36   0.069
sp|P79057|RS23_SCHPO 40S ribosomal protein S23 OS=Schizosaccharo...    34   0.20 
sp|P62268|RS23_RAT 40S ribosomal protein S23 OS=Rattus norvegicu...    34   0.20 
sp|Q6SA96|RS23_PIG 40S ribosomal protein S23 OS=Sus scrofa GN=RP...    34   0.20 
sp|P62267|RS23_MOUSE 40S ribosomal protein S23 OS=Mus musculus G...    34   0.20 
sp|Q90YQ1|RS23_ICTPU 40S ribosomal protein S23 OS=Ictalurus punc...    34   0.20 
sp|P62266|RS23_HUMAN 40S ribosomal protein S23 OS=Homo sapiens G...    34   0.20 
sp|P62298|RS23_CHILA 40S ribosomal protein S23 OS=Chinchilla lan...    34   0.20 
sp|Q3T199|RS23_BOVIN 40S ribosomal protein S23 OS=Bos taurus GN=...    34   0.20 
sp|Q19877|RS23_CAEEL 40S ribosomal protein S23 OS=Caenorhabditis...    33   0.45 
sp|P90707|RS23_BRUMA 40S ribosomal protein S23 OS=Brugia malayi ...    33   0.45 
sp|Q8I7D5|RS23_CIOIN 40S ribosomal protein S23 OS=Ciona intestin...    30   2.9  
sp|Q7N9N4|LIGB_PHOLL DNA ligase B OS=Photorhabdus luminescens su...    29   8.4  
sp|P06147|RS12_TETTH 40S ribosomal protein S12 OS=Tetrahymena th...    29   8.5  

>sp|P46297|RS23_FRAAN 40S ribosomal protein S23 OS=Fragaria ananassa
           GN=RPS23 PE=2 SV=1
          Length = 142

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142


>sp|Q9M5Z9|RS23_EUPES 40S ribosomal protein S23 OS=Euphorbia esula
           GN=RPS23 PE=2 SV=1
          Length = 142

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142


>sp|P49201|RS232_ARATH 40S ribosomal protein S23-2 OS=Arabidopsis
           thaliana GN=RPS23B PE=2 SV=2
          Length = 142

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142


>sp|Q9SF35|RS231_ARATH 40S ribosomal protein S23-1 OS=Arabidopsis
           thaliana GN=RPS23A PE=2 SV=2
          Length = 142

 Score = 42.7 bits (99), Expect = 6e-04
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142


>sp|P32827|RS23_YEAST 40S ribosomal protein S23 OS=Saccharomyces
           cerevisiae GN=RPS23A PE=1 SV=1
          Length = 145

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLAL+KEKKEKPRS
Sbjct: 125 VKVSGVSLLALWKEKKEKPRS 145


>sp|Q6YIA2|RS23_SACCA 40S ribosomal protein S23 OS=Saccharomyces
           castellii GN=RPS23A PE=3 SV=1
          Length = 145

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLAL+KEKKEKPRS
Sbjct: 125 VKVSGVSLLALWKEKKEKPRS 145


>sp|Q6YIA3|RS23_SACBA 40S ribosomal protein S23 OS=Saccharomyces
           bayanus GN=RPS23A PE=3 SV=1
          Length = 145

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLAL+KEKKEKPRS
Sbjct: 125 VKVSGVSLLALWKEKKEKPRS 145


>sp|Q6FLA8|RS23_CANGA 40S ribosomal protein S23 OS=Candida glabrata
           GN=RPS23 PE=3 SV=1
          Length = 145

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 20/21 (95%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLAL+KEKKEKPRS
Sbjct: 125 VKVSGVSLLALWKEKKEKPRS 145


>sp|Q9HE74|RS23_NEUCR 40S ribosomal protein S23 OS=Neurospora crassa
           GN=rps-23 PE=3 SV=1
          Length = 145

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGV LLAL+KEKKEKPRS
Sbjct: 125 VKVSGVGLLALWKEKKEKPRS 145


>sp|Q873W8|RS23_ASPFU 40S ribosomal protein S23 OS=Aspergillus
           fumigatus GN=rps23 PE=2 SV=1
          Length = 145

 Score = 39.3 bits (90), Expect = 0.006
 Identities = 19/21 (90%), Positives = 20/21 (95%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGV LLAL+KEKKEKPRS
Sbjct: 125 VKVSGVGLLALWKEKKEKPRS 145
tr_hit_id Q8VYX8
Definition tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein (Fragment) OS=Pisum sativum
Align length 21
Score (bit) 42.7
E-value 0.009
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944239|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_G13, 5'
         (195 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein (...    43   0.009
tr|Q8L4F2|Q8L4F2_ORYSJ Os03g0818400 protein OS=Oryza sativa subs...    43   0.009
tr|Q8H6J0|Q8H6J0_MAIZE Putative 40S ribosomal protein OS=Zea may...    43   0.009
tr|Q677G5|Q677G5_HYAOR 40S ribosomal protein S23 (Fragment) OS=H...    43   0.009
tr|Q5YJP7|Q5YJP7_HYAOR 40S ribosomal protein S23 (Fragment) OS=H...    43   0.009
tr|Q38HT5|Q38HT5_SOLTU Putative uncharacterized protein OS=Solan...    43   0.009
tr|Q2Q9T1|Q2Q9T1_PICMA 40S ribosomal protein (Fragment) OS=Picea...    43   0.009
tr|Q1H5G2|Q1H5G2_ARATH At3g09680 OS=Arabidopsis thaliana PE=2 SV=1     43   0.009
tr|Q0JHZ3|Q0JHZ3_ORYSJ Os01g0834600 protein (Fragment) OS=Oryza ...    43   0.009
tr|B8LKM8|B8LKM8_PICSI Putative uncharacterized protein OS=Picea...    43   0.009
tr|B7FHD2|B7FHD2_MEDTR Putative uncharacterized protein OS=Medic...    43   0.009
tr|B6TI93|B6TI93_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=...    43   0.009
tr|B6T6W0|B6T6W0_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=...    43   0.009
tr|B4FMD3|B4FMD3_MAIZE Putative uncharacterized protein OS=Zea m...    43   0.009
tr|B4FBY5|B4FBY5_MAIZE 40S ribosomal protein S23 OS=Zea mays PE=...    43   0.009
tr|B3TLT8|B3TLT8_ELAGV 40S ribosomal protein S23 OS=Elaeis guine...    43   0.009
tr|B3TLT7|B3TLT7_ELAGV 40S ribosomal protein S23 OS=Elaeis guine...    43   0.009
tr|A9SB19|A9SB19_PHYPA Predicted protein OS=Physcomitrella paten...    43   0.009
tr|A9PBK6|A9PBK6_POPTR Putative uncharacterized protein OS=Popul...    43   0.009
tr|A7PSZ0|A7PSZ0_VITVI Chromosome chr8 scaffold_29, whole genome...    43   0.009
tr|A5BX16|A5BX16_VITVI Putative uncharacterized protein OS=Vitis...    43   0.009
tr|A2ZZB2|A2ZZB2_ORYSJ Putative uncharacterized protein OS=Oryza...    43   0.009
tr|A2WWQ4|A2WWQ4_ORYSI Putative uncharacterized protein OS=Oryza...    43   0.009
tr|Q7YY06|Q7YY06_CRYPV Ribosomal protein S23 OS=Cryptosporidium ...    43   0.009
tr|B6ADS5|B6ADS5_9CRYT 40S ribosomal protein S23, putative OS=Cr...    43   0.009
tr|A3FPT1|A3FPT1_CRYPV Ribosomal protein S23 (Fragment) OS=Crypt...    43   0.009
tr|Q4UB42|Q4UB42_THEAN 40s ribosomal protein s23, putative OS=Th...    42   0.020
tr|Q4MYU6|Q4MYU6_THEPA 40S ribosomal protein S23, putative OS=Th...    42   0.020
tr|Q875Q2|Q875Q2_SACKL RPS23 OS=Saccharomyces kluyveri PE=3 SV=1       41   0.034
tr|Q875M3|Q875M3_KLULA KLLA0B11231p OS=Kluyveromyces lactis GN=K...    41   0.034

>tr|Q8VYX8|Q8VYX8_PEA Ultraviolet-B-inducible ribosomal protein
           (Fragment) OS=Pisum sativum PE=2 SV=1
          Length = 78

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 58  VKVSGVSLLALFKEKKEKPRS 78


>tr|Q8L4F2|Q8L4F2_ORYSJ Os03g0818400 protein OS=Oryza sativa subsp.
           japonica GN=P0460C04.38 PE=2 SV=1
          Length = 142

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142


>tr|Q8H6J0|Q8H6J0_MAIZE Putative 40S ribosomal protein OS=Zea mays
           GN=ZMRS072.4 PE=4 SV=1
          Length = 309

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 249 VKVSGVSLLALFKEKKEKPRS 269


>tr|Q677G5|Q677G5_HYAOR 40S ribosomal protein S23 (Fragment)
           OS=Hyacinthus orientalis GN=RPS23 PE=2 SV=1
          Length = 71

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 51  VKVSGVSLLALFKEKKEKPRS 71


>tr|Q5YJP7|Q5YJP7_HYAOR 40S ribosomal protein S23 (Fragment)
           OS=Hyacinthus orientalis PE=2 SV=1
          Length = 71

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 51  VKVSGVSLLALFKEKKEKPRS 71


>tr|Q38HT5|Q38HT5_SOLTU Putative uncharacterized protein OS=Solanum
           tuberosum PE=2 SV=1
          Length = 142

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142


>tr|Q2Q9T1|Q2Q9T1_PICMA 40S ribosomal protein (Fragment) OS=Picea
           mariana PE=4 SV=1
          Length = 82

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 62  VKVSGVSLLALFKEKKEKPRS 82


>tr|Q1H5G2|Q1H5G2_ARATH At3g09680 OS=Arabidopsis thaliana PE=2 SV=1
          Length = 142

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142


>tr|Q0JHZ3|Q0JHZ3_ORYSJ Os01g0834600 protein (Fragment) OS=Oryza
          sativa subsp. japonica GN=Os01g0834600 PE=4 SV=1
          Length = 46

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3  VKVSGVSLLALFKEKKEKPRS 65
          VKVSGVSLLALFKEKKEKPRS
Sbjct: 26 VKVSGVSLLALFKEKKEKPRS 46


>tr|B8LKM8|B8LKM8_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 142

 Score = 42.7 bits (99), Expect = 0.009
 Identities = 21/21 (100%), Positives = 21/21 (100%)
 Frame = +3

Query: 3   VKVSGVSLLALFKEKKEKPRS 65
           VKVSGVSLLALFKEKKEKPRS
Sbjct: 122 VKVSGVSLLALFKEKKEKPRS 142