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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944250
Clone id YMU02A01NGRL0005_H03
Library
Length 195
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_H03. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
CTCTCTGTGTGCGTGTGTCTCATGGCTCACTCATTGCGGCGCGTGTGCAAAACATTGCAC
CTCGCCCATGGCGAGGAAACGAAGAAGCTCTTTGAGCTGGGACCCGTATCAGTGCAGACG
GCTCTCTACGCGAAGGCCTCGCAGGACGAGGTCGTGAAGAAGAAGAAAAAAAAAAAAAAA
AAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id Q58699
Definition sp|Q58699|Y1303_METJA Uncharacterized polyferredoxin-like protein MJ1303 OS=Methanocaldococcus jannaschii
Align length 32
Score (bit) 29.6
E-value 5.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944250|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_H03, 5'
         (156 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58699|Y1303_METJA Uncharacterized polyferredoxin-like protei...    30   5.0  

>sp|Q58699|Y1303_METJA Uncharacterized polyferredoxin-like protein
           MJ1303 OS=Methanocaldococcus jannaschii GN=MJ1303 PE=4
           SV=1
          Length = 501

 Score = 29.6 bits (65), Expect = 5.0
 Identities = 12/32 (37%), Positives = 16/32 (50%)
 Frame = +2

Query: 20  SWLTHCGACAKHCTSPMARKRRSSLSWDPYQC 115
           S+  +CG CA+HC S   R     L + P  C
Sbjct: 264 SYCINCGLCAEHCPSGALRFENGHLYYSPDVC 295
tr_hit_id Q01BI0
Definition tr|Q01BI0|Q01BI0_OSTTA FOG: PPR repeat (ISS) OS=Ostreococcus tauri
Align length 46
Score (bit) 34.7
E-value 2.5
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944250|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_H03, 5'
         (156 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|Q01BI0|Q01BI0_OSTTA FOG: PPR repeat (ISS) OS=Ostreococcus tau...    35   2.5  

>tr|Q01BI0|Q01BI0_OSTTA FOG: PPR repeat (ISS) OS=Ostreococcus tauri
           GN=Ot04g00680 PE=4 SV=1
          Length = 501

 Score = 34.7 bits (78), Expect = 2.5
 Identities = 22/46 (47%), Positives = 28/46 (60%)
 Frame = +3

Query: 18  SHGSLIAARVQNIAPRPWRGNEEAL*AGTRISADGSLREGLAGRGR 155
           SHG+  AAR  N + RP RGNE  + +G R  + GS R G +GR R
Sbjct: 11  SHGA--AARHVNASKRP-RGNERVVTSGRRGESSGSERTGTSGRDR 53