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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
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AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944252
Clone id YMU02A01NGRL0005_H06
Library
Length 573
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_H06. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence 
GTGTTTCTGAAGGTCTGCCACGTGGCAGTGCATCTCAATCTCAAAGTAGATGGCTGCAAT
GGCGACGATACCAATTCAGCTTCCGCGCTACCAGAGGGTTCAAAATGCATTTGGGCAGAC
CACGGTCGGCGGGCTGAGGCCAAGCTACATGCAATGGGTGTCCACCAGGACTGCTTCATG
TAAGAGCAAGTTGGGCGTTTGTCTGGGAGCACAAGCCTCTTCTTCCGAGCTCGCTGGGGC
CGTCGACTGGGGTGAACCCATCTCCCTTGGCACTGTAAAGCTGCCGGACAACATCAATCT
TCAAAAGCTTGACATCCTTCTCTACCAGTGGGGAAGCAATCTCACGCAAAATGCAAATCT
ACCTCTGCCGGCCCCAATCAAGGTAGATAAAATAAAGGGTGGAGTAAGGCTCGGCTACAT
CCGACTTGTGGATGGCGCTATTGAGGACCTTGCACACATAGACTGTTGTGTCTCTCCAGG
CACCAAAGATTCTAGTGCCATGTTTCGAGCAGTGAGAAGTGGACGTTTTAAGGACCAAGT
TCCACCAGGTGAAGCCTTAATCATGCAAAGTCT
■■Homology search results ■■ -
sp_hit_id P46814
Definition sp|P46814|DAPF_MYCLE Diaminopimelate epimerase OS=Mycobacterium leprae
Align length 37
Score (bit) 33.1
E-value 1.0
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944252|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_H06, 5'
         (573 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P46814|DAPF_MYCLE Diaminopimelate epimerase OS=Mycobacterium ...    33   1.0  
sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from t...    32   2.9  
sp|P49997|RECF_AZOVI DNA replication and repair protein recF OS=...    30   6.5  
sp|Q5FMD6|GUAA_LACAC GMP synthase [glutamine-hydrolyzing] OS=Lac...    30   6.5  
sp|Q0KK55|VKIND_MOUSE Protein very KIND OS=Mus musculus GN=Kndc1...    30   8.5  
sp|Q2UMJ1|MED14_ASPOR Mediator of RNA polymerase II transcriptio...    30   8.5  

>sp|P46814|DAPF_MYCLE Diaminopimelate epimerase OS=Mycobacterium
           leprae GN=dapF PE=3 SV=1
          Length = 296

 Score = 33.1 bits (74), Expect = 1.0
 Identities = 16/37 (43%), Positives = 23/37 (62%)
 Frame = +2

Query: 200 CLGAQASSSELAGAVDWGEPISLGTVKLPDNINLQKL 310
           C+  Q S  ELA A+D G P+ L  V+ PD +N++ L
Sbjct: 172 CMDPQLSLEELA-ALDLGAPVHLDRVQFPDGVNIEVL 207


>sp|Q95SX7|RTBS_DROME Probable RNA-directed DNA polymerase from
           transposon BS OS=Drosophila melanogaster GN=RTase PE=2
           SV=1
          Length = 906

 Score = 31.6 bits (70), Expect = 2.9
 Identities = 17/41 (41%), Positives = 21/41 (51%)
 Frame = +3

Query: 144 ATCNGCPPGLLHVRASWAFVWEHKPLLPSSLGPSTGVNPSP 266
           A  +G P  L  +  SW    +H PL+ S    ST VNPSP
Sbjct: 192 AVYHGIPDHLATITQSWDLDSDHLPLIISIETDSTHVNPSP 232


>sp|P49997|RECF_AZOVI DNA replication and repair protein recF
           OS=Azotobacter vinelandii GN=recF PE=3 SV=1
          Length = 364

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 14/30 (46%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
 Frame = -2

Query: 245 RRPQRA-RKKRLVLPDKRPTCSYMKQSWWT 159
           RRPQRA R++RL     R  C  + +SWW+
Sbjct: 234 RRPQRADRRRRLARTMPRTCCRAVTRSWWS 263


>sp|Q5FMD6|GUAA_LACAC GMP synthase [glutamine-hydrolyzing]
           OS=Lactobacillus acidophilus GN=guaA PE=3 SV=1
          Length = 516

 Score = 30.4 bits (67), Expect = 6.5
 Identities = 32/113 (28%), Positives = 47/113 (41%), Gaps = 20/113 (17%)
 Frame = +2

Query: 191 LGVCLGAQASSSELAGAVDWGEPISLG----TVKLPDNINLQKLDILLYQW---GSNLTQ 349
           LG+C G Q  S +L G V+  E    G    TV+ PD+   + L    Y W   G  +TQ
Sbjct: 84  LGICYGMQLMSYDLGGKVERAENKEYGRANITVEDPDSALFKGLPTKQYVWMSHGDLVTQ 143

Query: 350 ----------NANLPLPAPIKVDKIKGGVRL-GYIRLVDGAIEDLAH--IDCC 469
                     + N P+ A    DK   G++    +R  +  ++ L H   D C
Sbjct: 144 APEGFEVTASSKNCPIAAIANPDKKFYGIQFHAEVRNSEYGLDILKHFAFDVC 196


>sp|Q0KK55|VKIND_MOUSE Protein very KIND OS=Mus musculus GN=Kndc1
           PE=1 SV=2
          Length = 1742

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 19/50 (38%), Positives = 24/50 (48%), Gaps = 2/50 (4%)
 Frame = -3

Query: 259 GFTPVDGPSEL--GRRGLCSQTNAQLALT*SSPGGHPLHVAWPQPADRGL 116
           G T + GP+    G R  C     + A + SSP G   H   P+PADR L
Sbjct: 812 GTTVLPGPTSASQGSRHPCKPPRGKAAASPSSPRGSDGHPEKPRPADRKL 861


>sp|Q2UMJ1|MED14_ASPOR Mediator of RNA polymerase II transcription
            subunit 14 OS=Aspergillus oryzae GN=rgr1 PE=3 SV=2
          Length = 1107

 Score = 30.0 bits (66), Expect = 8.5
 Identities = 13/35 (37%), Positives = 23/35 (65%)
 Frame = -3

Query: 358  ICILREIASPLVEKDVKLLKIDVVRQLYSAKGDGF 254
            + IL+E++SP        LK+ +  +LY++KGDG+
Sbjct: 981  VWILKELSSPKERSSQDQLKLRLRERLYNSKGDGW 1015
tr_hit_id A9NKZ7
Definition tr|A9NKZ7|A9NKZ7_PICSI Putative uncharacterized protein OS=Picea sitchensis
Align length 109
Score (bit) 150.0
E-value 4.0e-35
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944252|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_H06, 5'
         (573 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|A9NKZ7|A9NKZ7_PICSI Putative uncharacterized protein OS=Picea...   150   4e-35
tr|A9RYQ8|A9RYQ8_PHYPA Predicted protein (Fragment) OS=Physcomit...   146   7e-34
tr|Q94CW5|Q94CW5_ORYSJ cDNA clone:001-025-F01, full insert seque...   132   1e-29
tr|A2WX82|A2WX82_ORYSI Putative uncharacterized protein OS=Oryza...   132   1e-29
tr|B7ZYU1|B7ZYU1_MAIZE Putative uncharacterized protein OS=Zea m...   132   2e-29
tr|B6U3G5|B6U3G5_MAIZE Putative uncharacterized protein OS=Zea m...   132   2e-29
tr|A7PPA4|A7PPA4_VITVI Chromosome chr8 scaffold_23, whole genome...   119   9e-26
tr|A5BJZ6|A5BJZ6_VITVI Putative uncharacterized protein OS=Vitis...   119   9e-26
tr|A9NQI6|A9NQI6_PICSI Putative uncharacterized protein OS=Picea...   111   3e-23
tr|Q67XT7|Q67XT7_ARATH Putative uncharacterized protein At2g3614...   108   2e-22
tr|Q8VXY0|Q8VXY0_ARATH Putative uncharacterized protein At2g3614...   107   4e-22
tr|B6T6G8|B6T6G8_MAIZE Putative uncharacterized protein OS=Zea m...    95   2e-18
tr|A8IRT5|A8IRT5_CHLRE Predicted protein (Fragment) OS=Chlamydom...    46   0.002
tr|A4S6G1|A4S6G1_OSTLU Predicted protein OS=Ostreococcus lucimar...    42   0.024
tr|B8LPU9|B8LPU9_PICSI Putative uncharacterized protein OS=Picea...    42   0.032
tr|B8LKN5|B8LKN5_PICSI Putative uncharacterized protein OS=Picea...    42   0.032
tr|A4S8B0|A4S8B0_OSTLU Predicted protein OS=Ostreococcus lucimar...    39   0.27 
tr|A4CF91|A4CF91_9GAMM NH(3)-dependent NAD(+) synthetase OS=Pseu...    37   0.78 
tr|Q973N8|Q973N8_SULTO Putative uncharacterized protein ST0862 O...    37   0.78 
tr|Q00UA5|Q00UA5_OSTTA Molecular chaperone (DnaJ superfamily) (I...    36   1.7  
tr|A8L085|A8L085_FRASN Putative uncharacterized protein OS=Frank...    35   2.3  
tr|B1VF18|B1VF18_CORU7 Putative inosine-5'-monophosphate dehydro...    35   3.9  
tr|A3K5W9|A3K5W9_9RHOB Putative oxidoreductase OS=Sagittula stel...    34   5.0  
tr|Q5QMG9|Q5QMG9_ORYSJ Putative pectate lyase OS=Oryza sativa su...    34   6.5  
tr|A2ZZC9|A2ZZC9_ORYSJ Putative uncharacterized protein OS=Oryza...    34   6.5  
tr|A2WWS1|A2WWS1_ORYSI Putative uncharacterized protein OS=Oryza...    34   6.5  
tr|Q099I3|Q099I3_STIAU Putative uncharacterized protein OS=Stigm...    33   8.6  
tr|Q9KFW0|Q9KFW0_BACHD BH0361 protein OS=Bacillus halodurans GN=...    33   8.6  
tr|O30894|O30894_MYXXA Putative uncharacterized protein OS=Myxoc...    33   8.6  

>tr|A9NKZ7|A9NKZ7_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 209

 Score =  150 bits (380), Expect = 4e-35
 Identities = 63/109 (57%), Positives = 94/109 (86%)
 Frame = +2

Query: 245 DWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIKGGVRLGYIR 424
           D+GEPISLGT++LP N++++K++ LL+QWG++LTQ+A LPLP P+KVDK+KGG+RLG+++
Sbjct: 87  DFGEPISLGTMQLPSNVDVKKIESLLFQWGNSLTQSATLPLPVPLKVDKVKGGIRLGFVQ 146

Query: 425 LVDGAIEDLAHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQS 571
           + +G +EDL HIDC V P  + SSA+FRA+R+G+ K++ PPGE +IM+S
Sbjct: 147 INEGKVEDLVHIDCLVFPSVEGSSAVFRALRNGKLKNETPPGEPMIMRS 195


>tr|A9RYQ8|A9RYQ8_PHYPA Predicted protein (Fragment)
           OS=Physcomitrella patens subsp. patens
           GN=PHYPADRAFT_48298 PE=4 SV=1
          Length = 135

 Score =  146 bits (369), Expect = 7e-34
 Identities = 69/121 (57%), Positives = 89/121 (73%)
 Frame = +2

Query: 209 AQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVD 388
           AQA    L  +  WGE +SLGT  LP +++L +L+ LL+QWG++LT NANLPLP P+KVD
Sbjct: 2   AQAGEGSLQQSDKWGEGVSLGTALLPPDVDLARLENLLFQWGNSLTANANLPLPTPLKVD 61

Query: 389 KIKGGVRLGYIRLVDGAIEDLAHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQ 568
           ++KGGVRLGYIR+ +G IEDL HID  V+    D    F+A R+G+FKD+VPP E LIMQ
Sbjct: 62  RVKGGVRLGYIRINEGVIEDLVHIDVIVNAAEGDQKPYFQATRNGQFKDKVPPAEPLIMQ 121

Query: 569 S 571
           S
Sbjct: 122 S 122


>tr|Q94CW5|Q94CW5_ORYSJ cDNA clone:001-025-F01, full insert sequence
           OS=Oryza sativa subsp. japonica GN=P0423B08.8-1 PE=2
           SV=1
          Length = 186

 Score =  132 bits (333), Expect = 1e-29
 Identities = 63/121 (52%), Positives = 86/121 (71%)
 Frame = +2

Query: 209 AQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVD 388
           A A   E+  A D  + +SLGTVKLP NI++ + + LL+QWG++L Q A LPLP P++VD
Sbjct: 52  AAAGKDEIVRADDDDDGVSLGTVKLPANIDIARFETLLFQWGNSLCQGATLPLPVPLRVD 111

Query: 389 KIKGGVRLGYIRLVDGAIEDLAHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQ 568
           K++GGVRLG++ + DG  + L +IDC VSP T  S  +FRA+R+G  KDQ PPGE  IM+
Sbjct: 112 KVEGGVRLGFMAVDDGVTQVLVYIDCLVSPATAASGPVFRAIRNGPMKDQEPPGEPRIMR 171

Query: 569 S 571
           S
Sbjct: 172 S 172


>tr|A2WX82|A2WX82_ORYSI Putative uncharacterized protein OS=Oryza
           sativa subsp. indica GN=OsI_04525 PE=4 SV=1
          Length = 186

 Score =  132 bits (333), Expect = 1e-29
 Identities = 63/121 (52%), Positives = 86/121 (71%)
 Frame = +2

Query: 209 AQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVD 388
           A A   E+  A D  + +SLGTVKLP NI++ + + LL+QWG++L Q A LPLP P++VD
Sbjct: 52  AAAGKDEIVRADDDDDGVSLGTVKLPANIDIARFETLLFQWGNSLCQGATLPLPVPLRVD 111

Query: 389 KIKGGVRLGYIRLVDGAIEDLAHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQ 568
           K++GGVRLG++ + DG  + L +IDC VSP T  S  +FRA+R+G  KDQ PPGE  IM+
Sbjct: 112 KVEGGVRLGFMAVDDGVTQVLVYIDCLVSPATAASGPVFRAIRNGPMKDQEPPGEPRIMR 171

Query: 569 S 571
           S
Sbjct: 172 S 172


>tr|B7ZYU1|B7ZYU1_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 188

 Score =  132 bits (331), Expect = 2e-29
 Identities = 62/121 (51%), Positives = 85/121 (70%)
 Frame = +2

Query: 209 AQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVD 388
           A  +   +  A D  + +SLGTVKLP NI+  +L+ LL+QWG++L Q ANLPLP P+KVD
Sbjct: 54  ASPAKGGIVPASDDDDGVSLGTVKLPGNIDTARLESLLFQWGNSLCQGANLPLPVPLKVD 113

Query: 389 KIKGGVRLGYIRLVDGAIEDLAHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQ 568
           K++GG+RLG++ + DGA   L +IDC VSP    S  +FRA+R+G  KD+ PPGE  IM+
Sbjct: 114 KVEGGIRLGFVAVEDGATRTLVYIDCLVSPAPDGSGPVFRAIRNGPMKDKEPPGEPRIMR 173

Query: 569 S 571
           S
Sbjct: 174 S 174


>tr|B6U3G5|B6U3G5_MAIZE Putative uncharacterized protein OS=Zea mays
           PE=2 SV=1
          Length = 197

 Score =  132 bits (331), Expect = 2e-29
 Identities = 62/121 (51%), Positives = 85/121 (70%)
 Frame = +2

Query: 209 AQASSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVD 388
           A  +   +  A D  + +SLGTVKLP NI+  +L+ LL+QWG++L Q ANLPLP P+KVD
Sbjct: 63  ASPAKGGIVPASDDDDGVSLGTVKLPGNIDTARLESLLFQWGNSLCQGANLPLPVPLKVD 122

Query: 389 KIKGGVRLGYIRLVDGAIEDLAHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQ 568
           K++GG+RLG++ + DGA   L +IDC VSP    S  +FRA+R+G  KD+ PPGE  IM+
Sbjct: 123 KVEGGIRLGFVAVEDGATRTLVYIDCLVSPAPDGSGPVFRAIRNGPMKDKEPPGEPRIMR 182

Query: 569 S 571
           S
Sbjct: 183 S 183


>tr|A7PPA4|A7PPA4_VITVI Chromosome chr8 scaffold_23, whole genome
           shotgun sequence OS=Vitis vinifera GN=GSVIVT00021574001
           PE=4 SV=1
          Length = 190

 Score =  119 bits (299), Expect = 9e-26
 Identities = 56/106 (52%), Positives = 75/106 (70%)
 Frame = +2

Query: 254 EPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIKGGVRLGYIRLVD 433
           E +SLGT+KLP + ++ + + LL+QW ++L Q ANLPLP P+KVD+I+GG RLG+I + D
Sbjct: 71  EGVSLGTMKLPSDTDIPRFESLLFQWANSLCQGANLPLPVPLKVDRIQGGARLGFITIGD 130

Query: 434 GAIEDLAHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQS 571
           G  E L +IDC V P T  S   FRA+R+G  KD  PPGE  IM+S
Sbjct: 131 GKTEVLVYIDCLVFPATDGSGPTFRAIRNGPLKDLSPPGEPRIMRS 176


>tr|A5BJZ6|A5BJZ6_VITVI Putative uncharacterized protein OS=Vitis
           vinifera GN=VITISV_006537 PE=4 SV=1
          Length = 138

 Score =  119 bits (299), Expect = 9e-26
 Identities = 56/106 (52%), Positives = 75/106 (70%)
 Frame = +2

Query: 254 EPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIKGGVRLGYIRLVD 433
           E +SLGT+KLP + ++ + + LL+QW ++L Q ANLPLP P+KVD+I+GG RLG+I + D
Sbjct: 19  EGVSLGTMKLPSDTDIPRFESLLFQWANSLCQGANLPLPVPLKVDRIQGGARLGFITIGD 78

Query: 434 GAIEDLAHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQS 571
           G  E L +IDC V P T  S   FRA+R+G  KD  PPGE  IM+S
Sbjct: 79  GKTEVLVYIDCLVFPATDGSGPTFRAIRNGPLKDLSPPGEPRIMRS 124


>tr|A9NQI6|A9NQI6_PICSI Putative uncharacterized protein OS=Picea
           sitchensis PE=2 SV=1
          Length = 191

 Score =  111 bits (277), Expect = 3e-23
 Identities = 51/109 (46%), Positives = 78/109 (71%)
 Frame = +2

Query: 245 DWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIKGGVRLGYIR 424
           D+GEPISLGT++LP N++++K++ LL+Q                  VDK+KGG+RLG+++
Sbjct: 87  DFGEPISLGTMQLPSNVDVKKIESLLFQ------------------VDKVKGGIRLGFVQ 128

Query: 425 LVDGAIEDLAHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQS 571
           + +G +EDL HIDC V P  + SSA+FRA+R+G+ K++ PPGE +IM+S
Sbjct: 129 INEGKVEDLVHIDCLVFPSVEGSSAVFRALRNGKLKNETPPGEPMIMRS 177


>tr|Q67XT7|Q67XT7_ARATH Putative uncharacterized protein At2g36145
           (Fragment) OS=Arabidopsis thaliana GN=At2g36145 PE=2
           SV=1
          Length = 189

 Score =  108 bits (270), Expect = 2e-22
 Identities = 68/179 (37%), Positives = 104/179 (58%), Gaps = 2/179 (1%)
 Frame = +2

Query: 41  SK*MAAMATIPIQLPRYQRVQNAF-GQTTVGGLRPSYMQWVSTRTASCKSKLGVCLGAQA 217
           S+ MA  AT+ +  P   R    F G+ ++    P  +Q + T  A+   ++   + A A
Sbjct: 1   SRKMAFAATLFVPPPVAVRSPARFLGRLSI----PCLLQVLPTNGAASPRQVKRAIVANA 56

Query: 218 SSSELAGAVDWGEPISLGTVKLPDNINLQKLDILLYQWGSNLTQNANLPLPAPIKVDKIK 397
           S        +  + +SLGT+KLP + +L + + LL+QW ++L Q ANLPLP P+KVD+I 
Sbjct: 57  SPGNGGVKAEEEDGVSLGTMKLPVDTDLARFETLLFQWANSLCQGANLPLPVPLKVDRIS 116

Query: 398 GGVRLGYIRLVDGAIEDL-AHIDCCVSPGTKDSSAMFRAVRSGRFKDQVPPGEALIMQS 571
           GG RLG+I + D    D+  +IDC V   T ++  +F+A R+GR KD+ PPGE  IM+S
Sbjct: 117 GGARLGFIVMEDEGKTDVPVYIDCLVFQ-TTENGVVFQATRNGRKKDKAPPGEERIMRS 174