DK944254
Clone id YMU02A01NGRL0005_H08
Library
Length 409
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_H08. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID
Sequence
TTGGTTCTGAAGCTGACGATGACAGGATAGACTTGCTACTGAGCGAGTTGAAAGGCAAGG
ACATTGTGGAGCTCATTGCTGCCGGAAAGGAGAAGCTTGCTTCTGTCCCTGCAGGTGGAG
GTGGTGGCGTTGTGGTCAGTGCAGGAGGTGGTGGTGGTGCAGGTCCTGCCGCAGCAGTTG
AGGAGAAAAAGGAGGAGAAAGAGGAAAAGAAGGAGCCCGAGGAGGAGTCCGATGATGACA
TGGGATTCAGTCTGTTTGACTAAGGTTTTTGCAAAGGGAGGCAGTGAACCGATTTTGTAA
TGCCCTTTCTTTAGATGTAATAGAAGTATATTTTCGCAAAAAAAAAAAAAAAAAAAAGAA
AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA
■■Homology search results ■■ -
sp_hit_id P41099
Definition sp|P41099|RLA2_PARAR 60S acidic ribosomal protein P2 OS=Parthenium argentatum
Align length 32
Score (bit) 51.2
E-value 2.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944254|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_H08, 5'
(337 letters)

Database: uniprot_sprot.fasta
412,525 sequences; 148,809,765 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

sp|P41099|RLA2_PARAR 60S acidic ribosomal protein P2 OS=Partheni... 51 2e-06
sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 OS=Alternar... 48 2e-05
sp|Q9SLF7|RLA22_ARATH 60S acidic ribosomal protein P2-2 OS=Arabi... 48 2e-05
sp|P51407|RLA21_ARATH 60S acidic ribosomal protein P2-1 OS=Arabi... 48 2e-05
sp|O24415|RLA2B_MAIZE 60S acidic ribosomal protein P2B OS=Zea ma... 45 9e-05
sp|P46252|RLA2A_MAIZE 60S acidic ribosomal protein P2A OS=Zea ma... 45 9e-05
sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 OS=Podospor... 45 1e-04
sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha OS=Sc... 44 3e-04
sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 OS=Fusarium... 44 3e-04
sp|Q9LXM8|RLA24_ARATH 60S acidic ribosomal protein P2-4 OS=Arabi... 43 4e-04
sp|O01725|RLA2_BRAFL 60S acidic ribosomal protein P2 OS=Branchio... 43 6e-04
sp|P17478|RLA4_SCHPO 60S acidic ribosomal protein P2-beta OS=Sch... 42 0.001
sp|O14317|RLA6_SCHPO 60S acidic ribosomal protein P2-C OS=Schizo... 42 0.001
sp|P42039|RLA2_CLAHE 60S acidic ribosomal protein P2 OS=Cladospo... 42 0.001
sp|Q9LH85|RLA23_ARATH 60S acidic ribosomal protein P2-3 OS=Arabi... 41 0.002
sp|Q6X9Z5|RLA2_HORSE 60S acidic ribosomal protein P2 OS=Equus ca... 40 0.004
sp|Q9UUZ6|RLA2_ASPFU 60S acidic ribosomal protein P2 OS=Aspergil... 39 0.006
sp|Q9LUK2|RLA25_ARATH 60S acidic ribosomal protein P2-5 OS=Arabi... 39 0.006
sp|P99027|RLA2_MOUSE 60S acidic ribosomal protein P2 OS=Mus musc... 39 0.011
sp|P05387|RLA2_HUMAN 60S acidic ribosomal protein P2 OS=Homo sap... 38 0.014
sp|Q96UQ7|RLA2_RHOGU 60S acidic ribosomal protein P2 OS=Rhodotor... 38 0.018
sp|P42899|RLA2_BOVIN 60S acidic ribosomal protein P2 OS=Bos taur... 38 0.018
sp|Q9HFQ4|RLA4_CANAL 60S acidic ribosomal protein P2-B OS=Candid... 37 0.024
sp|P02401|RLA2_RAT 60S acidic ribosomal protein P2 OS=Rattus nor... 37 0.031
sp|Q29315|RLA2_PIG 60S acidic ribosomal protein P2 OS=Sus scrofa... 35 0.090
sp|P05319|RLA2_YEAST 60S acidic ribosomal protein P2-alpha OS=Sa... 34 0.20
sp|P22683|RLA2_DICDI 60S acidic ribosomal protein P2 OS=Dictyost... 34 0.20
sp|Q9HFQ5|RLA2_CANAL 60S acidic ribosomal protein P2-A OS=Candid... 34 0.20
sp|Q9GPU2|RLA2_EUPRA 60S acidic ribosomal protein P2 OS=Euplotes... 33 0.34
sp|O61463|RLA2_CRYST 60S acidic ribosomal protein P2 OS=Cryptoch... 33 0.34

>sp|P41099|RLA2_PARAR 60S acidic ribosomal protein P2 OS=Parthenium
argentatum PE=3 SV=1
Length = 114

Score = 51.2 bits (121), Expect = 2e-06
Identities = 22/32 (68%), Positives = 31/32 (96%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G++ADDD+I+LLLS++KGKDI ELIA+G+E+L
Sbjct: 31 GADADDDKIELLLSQVKGKDITELIASGRERL 62


>sp|P42037|RLA2_ALTAL 60S acidic ribosomal protein P2 OS=Alternaria
alternata GN=ALTA5 PE=1 SV=1
Length = 113

Score = 47.8 bits (112), Expect = 2e-05
Identities = 23/32 (71%), Positives = 27/32 (84%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G EAD DR+D L+SEL+GKDI ELIA+G EKL
Sbjct: 31 GIEADSDRLDKLISELEGKDINELIASGSEKL 62


>sp|Q9SLF7|RLA22_ARATH 60S acidic ribosomal protein P2-2
OS=Arabidopsis thaliana GN=RPP2B PE=1 SV=1
Length = 115

Score = 47.8 bits (112), Expect = 2e-05
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+E +D +I+LLL E+KGKD+ ELIAAG+EKL
Sbjct: 31 GAETEDSQIELLLKEVKGKDLAELIAAGREKL 62


>sp|P51407|RLA21_ARATH 60S acidic ribosomal protein P2-1
OS=Arabidopsis thaliana GN=RPP2A PE=2 SV=2
Length = 115

Score = 47.8 bits (112), Expect = 2e-05
Identities = 21/32 (65%), Positives = 28/32 (87%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+E +D +I+LLL E+KGKD+ ELIAAG+EKL
Sbjct: 31 GAETEDSQIELLLKEVKGKDLAELIAAGREKL 62


>sp|O24415|RLA2B_MAIZE 60S acidic ribosomal protein P2B OS=Zea mays
GN=RPP2B PE=1 SV=1
Length = 113

Score = 45.4 bits (106), Expect = 9e-05
Identities = 19/32 (59%), Positives = 29/32 (90%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+EAD+++++ LL+ELK KDI E+IAAG+E+L
Sbjct: 31 GAEADEEKLEFLLTELKDKDITEVIAAGRERL 62


>sp|P46252|RLA2A_MAIZE 60S acidic ribosomal protein P2A OS=Zea mays
GN=RPP2A PE=1 SV=3
Length = 112

Score = 45.4 bits (106), Expect = 9e-05
Identities = 20/31 (64%), Positives = 27/31 (87%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEK 95
G E D+++++LLLS+L GKDI ELIAAG+EK
Sbjct: 31 GCEVDNEKMELLLSQLSGKDITELIAAGREK 61


>sp|Q9C3Z5|RLA2_PODAN 60S acidic ribosomal protein P2 OS=Podospora
anserina PE=3 SV=1
Length = 111

Score = 44.7 bits (104), Expect = 1e-04
Identities = 21/32 (65%), Positives = 25/32 (78%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G EAD DR+D L+SEL+GKD+ ELIA G KL
Sbjct: 31 GIEADSDRLDKLISELEGKDVNELIAEGSSKL 62


>sp|P08094|RLA2_SCHPO 60S acidic ribosomal protein P2-alpha
OS=Schizosaccharomyces pombe GN=rpp201 PE=1 SV=1
Length = 110

Score = 43.9 bits (102), Expect = 3e-04
Identities = 21/32 (65%), Positives = 26/32 (81%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G EA+ +RI+ L++EL GKDI ELIAAG EKL
Sbjct: 31 GIEAESERIETLINELNGKDIDELIAAGNEKL 62


>sp|Q8TFM9|RLA2_FUSCU 60S acidic ribosomal protein P2 OS=Fusarium
culmorum PE=1 SV=1
Length = 109

Score = 43.9 bits (102), Expect = 3e-04
Identities = 20/32 (62%), Positives = 27/32 (84%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G +AD+DR++ L+SEL+GKDI +LIA G EKL
Sbjct: 31 GIDADEDRLNKLISELEGKDIQQLIAEGSEKL 62


>sp|Q9LXM8|RLA24_ARATH 60S acidic ribosomal protein P2-4
OS=Arabidopsis thaliana GN=RPP2D PE=2 SV=1
Length = 111

Score = 43.1 bits (100), Expect = 4e-04
Identities = 19/32 (59%), Positives = 26/32 (81%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G++ D + I+LLL E+ GKDI ELIA+G+EKL
Sbjct: 31 GADVDGESIELLLKEVSGKDIAELIASGREKL 62


tr_hit_id Q3HVP0
Definition tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein OS=Solanum tuberosum
Align length 32
Score (bit) 55.8
E-value 1.0e-06
Report
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.

Query= DK944254|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_H08, 5'
(337 letters)

Database: uniprot_trembl.fasta
7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



Score E
Sequences producing significant alignments: (bits) Value

tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein... 56 1e-06
tr|A8QJ72|A8QJ72_9ROSI 60S acidic ribosomal protein P2 OS=Juglan... 56 1e-06
tr|A7PPG7|A7PPG7_VITVI Chromosome chr8 scaffold_23, whole genome... 56 1e-06
tr|A5AGQ2|A5AGQ2_VITVI Putative uncharacterized protein (Chromos... 55 2e-06
tr|Q8H2B9|Q8H2B9_PRUDU 60s acidic ribosomal protein OS=Prunus du... 54 5e-06
tr|A7QBE6|A7QBE6_VITVI Chromosome chr13 scaffold_74, whole genom... 53 7e-06
tr|Q38M67|Q38M67_SOLTU Putative uncharacterized protein OS=Solan... 53 9e-06
tr|A9PCM7|A9PCM7_POPTR Putative uncharacterized protein OS=Popul... 53 9e-06
tr|A9PAR7|A9PAR7_POPTR Putative uncharacterized protein OS=Popul... 53 9e-06
tr|A9P894|A9P894_POPTR Putative uncharacterized protein OS=Popul... 53 9e-06
tr|Q5YJR8|Q5YJR8_HYAOR 60S acidic ribosomal protein OS=Hyacinthu... 52 2e-05
tr|Q677G0|Q677G0_HYAOR Acidic ribosomal protein OS=Hyacinthus or... 50 4e-05
tr|A5BNT4|A5BNT4_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04
tr|A9U0Z9|A9U0Z9_PHYPA Predicted protein OS=Physcomitrella paten... 48 2e-04
tr|B6DRE4|B6DRE4_9LAMI 60S acidic ribosomal protein P2-like prot... 48 3e-04
tr|A9RKJ0|A9RKJ0_PHYPA Predicted protein OS=Physcomitrella paten... 48 3e-04
tr|B2WCX9|B2WCX9_PYRTR 60S acidic ribosomal protein P2 OS=Pyreno... 48 3e-04
tr|B7FMX7|B7FMX7_MEDTR Putative uncharacterized protein OS=Medic... 47 4e-04
tr|A9S6G5|A9S6G5_PHYPA Predicted protein OS=Physcomitrella paten... 47 4e-04
tr|Q65WT5|Q65WT5_ORYSJ Os05g0445500 protein OS=Oryza sativa subs... 47 5e-04
tr|B8AYR2|B8AYR2_ORYSI Putative uncharacterized protein OS=Oryza... 47 5e-04
tr|A9NWC8|A9NWC8_PICSI Putative uncharacterized protein OS=Picea... 47 5e-04
tr|A7QN01|A7QN01_VITVI Chromosome undetermined scaffold_129, who... 47 5e-04
tr|A6MZN1|A6MZN1_ORYSI 60S acidic ribosomal protein p2b (Fragmen... 47 5e-04
tr|A3B4J3|A3B4J3_ORYSJ Putative uncharacterized protein OS=Oryza... 47 5e-04
tr|Q9SM26|Q9SM26_MAIZE 60S acidic ribosomal protein P2A OS=Zea m... 47 6e-04
tr|Q7XYD5|Q7XYD5_WHEAT Acidic ribosomal protein (Fragment) OS=Tr... 47 6e-04
tr|B4FI88|B4FI88_MAIZE 60S acidic ribosomal protein P2A OS=Zea m... 47 6e-04
tr|A9RV72|A9RV72_PHYPA Predicted protein OS=Physcomitrella paten... 47 6e-04
tr|A9RPY2|A9RPY2_PHYPA Predicted protein OS=Physcomitrella paten... 47 6e-04

>tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein
OS=Solanum tuberosum PE=4 SV=1
Length = 115

Score = 55.8 bits (133), Expect = 1e-06
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+EADDDRI+LLLS++KGKDI ELIAAG+EKL
Sbjct: 31 GAEADDDRIELLLSQVKGKDITELIAAGREKL 62


>tr|A8QJ72|A8QJ72_9ROSI 60S acidic ribosomal protein P2 OS=Juglans
regia PE=4 SV=1
Length = 113

Score = 55.8 bits (133), Expect = 1e-06
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+EADDD+I+LLLSE+KGKDI ELIAAG+EKL
Sbjct: 31 GAEADDDKIELLLSEVKGKDITELIAAGREKL 62


>tr|A7PPG7|A7PPG7_VITVI Chromosome chr8 scaffold_23, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00021645001
PE=4 SV=1
Length = 114

Score = 55.8 bits (133), Expect = 1e-06
Identities = 26/32 (81%), Positives = 31/32 (96%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+EADDDRI+LLLSE+KGKDI ELIA+G+EKL
Sbjct: 31 GAEADDDRIELLLSEVKGKDITELIASGREKL 62


>tr|A5AGQ2|A5AGQ2_VITVI Putative uncharacterized protein (Chromosome
chr6 scaffold_25, whole genome shotgun sequence)
OS=Vitis vinifera GN=GSVIVT00022049001 PE=4 SV=1
Length = 113

Score = 54.7 bits (130), Expect = 2e-06
Identities = 25/32 (78%), Positives = 31/32 (96%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+EADDDRI+LLL+E+KGKDI ELIA+G+EKL
Sbjct: 31 GAEADDDRIELLLAEVKGKDITELIASGREKL 62


>tr|Q8H2B9|Q8H2B9_PRUDU 60s acidic ribosomal protein OS=Prunus
dulcis GN=AL60SRP PE=4 SV=1
Length = 113

Score = 53.5 bits (127), Expect = 5e-06
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+E DDDRI LLLSE+KGKDI ELIA+G+EKL
Sbjct: 31 GAETDDDRIQLLLSEVKGKDITELIASGREKL 62


>tr|A7QBE6|A7QBE6_VITVI Chromosome chr13 scaffold_74, whole genome
shotgun sequence OS=Vitis vinifera GN=GSVIVT00034930001
PE=4 SV=1
Length = 111

Score = 53.1 bits (126), Expect = 7e-06
Identities = 25/32 (78%), Positives = 30/32 (93%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+EADDD I+LLLSE+KGKDI ELIA+G+EKL
Sbjct: 31 GAEADDDGIELLLSEVKGKDITELIASGREKL 62


>tr|Q38M67|Q38M67_SOLTU Putative uncharacterized protein OS=Solanum
tuberosum PE=2 SV=1
Length = 162

Score = 52.8 bits (125), Expect = 9e-06
Identities = 25/32 (78%), Positives = 29/32 (90%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G+EADDDRI LLLS++ GKDI ELIAAG+EKL
Sbjct: 31 GAEADDDRIQLLLSQVDGKDITELIAAGREKL 62


>tr|A9PCM7|A9PCM7_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 113

Score = 52.8 bits (125), Expect = 9e-06
Identities = 24/32 (75%), Positives = 30/32 (93%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G++ADDDRI+LLLS +KGKDI ELIA+G+EKL
Sbjct: 31 GADADDDRIELLLSSVKGKDITELIASGREKL 62


>tr|A9PAR7|A9PAR7_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 114

Score = 52.8 bits (125), Expect = 9e-06
Identities = 24/32 (75%), Positives = 30/32 (93%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G++ADDDRI+LLLS +KGKDI ELIA+G+EKL
Sbjct: 31 GADADDDRIELLLSSVKGKDITELIASGREKL 62


>tr|A9P894|A9P894_POPTR Putative uncharacterized protein OS=Populus
trichocarpa PE=4 SV=1
Length = 114

Score = 52.8 bits (125), Expect = 9e-06
Identities = 24/32 (75%), Positives = 30/32 (93%)
Frame = +3

Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98
G++ADDDRI+LLLS +KGKDI ELIA+G+EKL
Sbjct: 31 GADADDDRIELLLSSVKGKDITELIASGREKL 62