DK944254 |
Clone id |
YMU02A01NGRL0005_H08 |
Library |
YMU02 |
Length |
409 |
Definition |
Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_H08. 5' end sequence. |
Accession |
DK944254 |
Tissue type |
young leaves |
Developmental stage |
sporophyte |
Contig ID |
CL559Contig1 |
Sequence |
TTGGTTCTGAAGCTGACGATGACAGGATAGACTTGCTACTGAGCGAGTTGAAAGGCAAGG ACATTGTGGAGCTCATTGCTGCCGGAAAGGAGAAGCTTGCTTCTGTCCCTGCAGGTGGAG GTGGTGGCGTTGTGGTCAGTGCAGGAGGTGGTGGTGGTGCAGGTCCTGCCGCAGCAGTTG AGGAGAAAAAGGAGGAGAAAGAGGAAAAGAAGGAGCCCGAGGAGGAGTCCGATGATGACA TGGGATTCAGTCTGTTTGACTAAGGTTTTTGCAAAGGGAGGCAGTGAACCGATTTTGTAA TGCCCTTTCTTTAGATGTAATAGAAGTATATTTTCGCAAAAAAAAAAAAAAAAAAAAGAA AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA |
■■Homology search results ■■ |
- |
Swiss-Prot (release 56.9) |
Link to BlastX Result : Swiss-Prot |
sp_hit_id |
P41099 |
Definition |
sp|P41099|RLA2_PARAR 60S acidic ribosomal protein P2 OS=Parthenium argentatum |
Align length |
32 |
Score (bit) |
51.2 |
E-value |
2.0e-06 |
Report |
|
TrEMBL (release 39.9) |
Link to BlastX Result : TrEMBL |
tr_hit_id |
Q3HVP0 |
Definition |
tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein OS=Solanum tuberosum |
Align length |
32 |
Score (bit) |
55.8 |
E-value |
1.0e-06 |
Report |
BLASTX 2.2.19 [Nov-02-2008]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402.
Query= DK944254|Adiantum capillus-veneris mRNA, clone: YMU02A01NGRL0005_H08, 5' (337 letters)
Database: uniprot_trembl.fasta 7,341,751 sequences; 2,391,615,440 total letters
Searching..................................................done
Score E Sequences producing significant alignments: (bits) Value
tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein... 56 1e-06 tr|A8QJ72|A8QJ72_9ROSI 60S acidic ribosomal protein P2 OS=Juglan... 56 1e-06 tr|A7PPG7|A7PPG7_VITVI Chromosome chr8 scaffold_23, whole genome... 56 1e-06 tr|A5AGQ2|A5AGQ2_VITVI Putative uncharacterized protein (Chromos... 55 2e-06 tr|Q8H2B9|Q8H2B9_PRUDU 60s acidic ribosomal protein OS=Prunus du... 54 5e-06 tr|A7QBE6|A7QBE6_VITVI Chromosome chr13 scaffold_74, whole genom... 53 7e-06 tr|Q38M67|Q38M67_SOLTU Putative uncharacterized protein OS=Solan... 53 9e-06 tr|A9PCM7|A9PCM7_POPTR Putative uncharacterized protein OS=Popul... 53 9e-06 tr|A9PAR7|A9PAR7_POPTR Putative uncharacterized protein OS=Popul... 53 9e-06 tr|A9P894|A9P894_POPTR Putative uncharacterized protein OS=Popul... 53 9e-06 tr|Q5YJR8|Q5YJR8_HYAOR 60S acidic ribosomal protein OS=Hyacinthu... 52 2e-05 tr|Q677G0|Q677G0_HYAOR Acidic ribosomal protein OS=Hyacinthus or... 50 4e-05 tr|A5BNT4|A5BNT4_VITVI Putative uncharacterized protein OS=Vitis... 49 2e-04 tr|A9U0Z9|A9U0Z9_PHYPA Predicted protein OS=Physcomitrella paten... 48 2e-04 tr|B6DRE4|B6DRE4_9LAMI 60S acidic ribosomal protein P2-like prot... 48 3e-04 tr|A9RKJ0|A9RKJ0_PHYPA Predicted protein OS=Physcomitrella paten... 48 3e-04 tr|B2WCX9|B2WCX9_PYRTR 60S acidic ribosomal protein P2 OS=Pyreno... 48 3e-04 tr|B7FMX7|B7FMX7_MEDTR Putative uncharacterized protein OS=Medic... 47 4e-04 tr|A9S6G5|A9S6G5_PHYPA Predicted protein OS=Physcomitrella paten... 47 4e-04 tr|Q65WT5|Q65WT5_ORYSJ Os05g0445500 protein OS=Oryza sativa subs... 47 5e-04 tr|B8AYR2|B8AYR2_ORYSI Putative uncharacterized protein OS=Oryza... 47 5e-04 tr|A9NWC8|A9NWC8_PICSI Putative uncharacterized protein OS=Picea... 47 5e-04 tr|A7QN01|A7QN01_VITVI Chromosome undetermined scaffold_129, who... 47 5e-04 tr|A6MZN1|A6MZN1_ORYSI 60S acidic ribosomal protein p2b (Fragmen... 47 5e-04 tr|A3B4J3|A3B4J3_ORYSJ Putative uncharacterized protein OS=Oryza... 47 5e-04 tr|Q9SM26|Q9SM26_MAIZE 60S acidic ribosomal protein P2A OS=Zea m... 47 6e-04 tr|Q7XYD5|Q7XYD5_WHEAT Acidic ribosomal protein (Fragment) OS=Tr... 47 6e-04 tr|B4FI88|B4FI88_MAIZE 60S acidic ribosomal protein P2A OS=Zea m... 47 6e-04 tr|A9RV72|A9RV72_PHYPA Predicted protein OS=Physcomitrella paten... 47 6e-04 tr|A9RPY2|A9RPY2_PHYPA Predicted protein OS=Physcomitrella paten... 47 6e-04
>tr|Q3HVP0|Q3HVP0_SOLTU 60s acidic ribosomal protein-like protein OS=Solanum tuberosum PE=4 SV=1 Length = 115
Score = 55.8 bits (133), Expect = 1e-06 Identities = 26/32 (81%), Positives = 31/32 (96%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G+EADDDRI+LLLS++KGKDI ELIAAG+EKL Sbjct: 31 GAEADDDRIELLLSQVKGKDITELIAAGREKL 62
>tr|A8QJ72|A8QJ72_9ROSI 60S acidic ribosomal protein P2 OS=Juglans regia PE=4 SV=1 Length = 113
Score = 55.8 bits (133), Expect = 1e-06 Identities = 26/32 (81%), Positives = 31/32 (96%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G+EADDD+I+LLLSE+KGKDI ELIAAG+EKL Sbjct: 31 GAEADDDKIELLLSEVKGKDITELIAAGREKL 62
>tr|A7PPG7|A7PPG7_VITVI Chromosome chr8 scaffold_23, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00021645001 PE=4 SV=1 Length = 114
Score = 55.8 bits (133), Expect = 1e-06 Identities = 26/32 (81%), Positives = 31/32 (96%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G+EADDDRI+LLLSE+KGKDI ELIA+G+EKL Sbjct: 31 GAEADDDRIELLLSEVKGKDITELIASGREKL 62
>tr|A5AGQ2|A5AGQ2_VITVI Putative uncharacterized protein (Chromosome chr6 scaffold_25, whole genome shotgun sequence) OS=Vitis vinifera GN=GSVIVT00022049001 PE=4 SV=1 Length = 113
Score = 54.7 bits (130), Expect = 2e-06 Identities = 25/32 (78%), Positives = 31/32 (96%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G+EADDDRI+LLL+E+KGKDI ELIA+G+EKL Sbjct: 31 GAEADDDRIELLLAEVKGKDITELIASGREKL 62
>tr|Q8H2B9|Q8H2B9_PRUDU 60s acidic ribosomal protein OS=Prunus dulcis GN=AL60SRP PE=4 SV=1 Length = 113
Score = 53.5 bits (127), Expect = 5e-06 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G+E DDDRI LLLSE+KGKDI ELIA+G+EKL Sbjct: 31 GAETDDDRIQLLLSEVKGKDITELIASGREKL 62
>tr|A7QBE6|A7QBE6_VITVI Chromosome chr13 scaffold_74, whole genome shotgun sequence OS=Vitis vinifera GN=GSVIVT00034930001 PE=4 SV=1 Length = 111
Score = 53.1 bits (126), Expect = 7e-06 Identities = 25/32 (78%), Positives = 30/32 (93%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G+EADDD I+LLLSE+KGKDI ELIA+G+EKL Sbjct: 31 GAEADDDGIELLLSEVKGKDITELIASGREKL 62
>tr|Q38M67|Q38M67_SOLTU Putative uncharacterized protein OS=Solanum tuberosum PE=2 SV=1 Length = 162
Score = 52.8 bits (125), Expect = 9e-06 Identities = 25/32 (78%), Positives = 29/32 (90%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G+EADDDRI LLLS++ GKDI ELIAAG+EKL Sbjct: 31 GAEADDDRIQLLLSQVDGKDITELIAAGREKL 62
>tr|A9PCM7|A9PCM7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 113
Score = 52.8 bits (125), Expect = 9e-06 Identities = 24/32 (75%), Positives = 30/32 (93%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G++ADDDRI+LLLS +KGKDI ELIA+G+EKL Sbjct: 31 GADADDDRIELLLSSVKGKDITELIASGREKL 62
>tr|A9PAR7|A9PAR7_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 114
Score = 52.8 bits (125), Expect = 9e-06 Identities = 24/32 (75%), Positives = 30/32 (93%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G++ADDDRI+LLLS +KGKDI ELIA+G+EKL Sbjct: 31 GADADDDRIELLLSSVKGKDITELIASGREKL 62
>tr|A9P894|A9P894_POPTR Putative uncharacterized protein OS=Populus trichocarpa PE=4 SV=1 Length = 114
Score = 52.8 bits (125), Expect = 9e-06 Identities = 24/32 (75%), Positives = 30/32 (93%) Frame = +3
Query: 3 GSEADDDRIDLLLSELKGKDIVELIAAGKEKL 98 G++ADDDRI+LLLS +KGKDI ELIA+G+EKL Sbjct: 31 GADADDDRIELLLSSVKGKDITELIASGREKL 62
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