NBDC - アーカイブトップ - ヘルプ
データベースの説明 | データ項目の説明 | ダウンロード | 利用許諾 | ヘルプ
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
NBDC - LSDB Archive
Description of this DB | Description of data items | Download | License
AcEST | BlastX Result : Swiss-Prot | BlastX Result : TrEMBL | AcESTcontig | About Libraries
DK944259
Clone id YMU02A01NGRL0005_H14
Library
Length 546
Definition Adiantum capillus-veneris mRNA. clone: YMU02A01NGRL0005_H14. 5' end sequence.
Accession
Tissue type young leaves
Developmental stage sporophyte
Contig ID -
Sequence 
GATATCTAGTTTTTCCAGTTTTCCGTTTGATGCCTTCAGGCCTGCTATGTAAGCAGTGAT
GTACTTGCCCTCAGAATAGGCACCATTTGGGCGTTACAAGTAATAGAATCAGCCTCTTTT
TCTTGGGGGGGAAAAAGGTCCTTCCTGTGGCGTTAAGGCAGGTCTTTGATGCACCGAAGC
TCTTCTCCGGCATAAATTATGTTGGGTGTGGAAGACTTGATGAAGGAAGAAGATTGTAAT
ATAAATCCAGTCTCAAGGAAGTGGCACAACTGGCAACACATGTGGGGGTGCTCTCTTGTT
GTTTAGGCTGGAGCGAAACTCACTTCGTCTATGCTGGAGCTGCATACGTTGTAAGGGCCT
CAGCTAGATTCATGCCATCATCATGTACACCAATCATGTCCTGAAGGGTTGTAGCCTGTT
AACTATGTGATCATAACTCTTGAACATTATTCCACGAGGTGCTGTATCATTCAGATGAAC
ATCCCCTCAAAAGTTGAATTGATTCCTTTAGTTTTCTAAAAAAAAAAAAAAAAAAAAAAA
AAAAAA
■■Homology search results ■■ -
sp_hit_id A2BQ40
Definition sp|A2BQ40|GLO2_PROMS Hydroxyacylglutathione hydrolase OS=Prochlorococcus marinus (strain AS9601)
Align length 83
Score (bit) 32.0
E-value 1.8
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944259|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_H14, 5'
         (517 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|A2BQ40|GLO2_PROMS Hydroxyacylglutathione hydrolase OS=Prochlo...    32   1.8  
sp|A3PBT3|GLO2_PROM0 Hydroxyacylglutathione hydrolase OS=Prochlo...    32   2.3  
sp|Q4K6J3|MURG_PSEF5 UDP-N-acetylglucosamine--N-acetylmuramyl-(p...    31   3.0  
sp|Q1LT01|GLO2_BAUCH Hydroxyacylglutathione hydrolase OS=Baumann...    31   3.0  
sp|Q31BX5|GLO2_PROM9 Hydroxyacylglutathione hydrolase OS=Prochlo...    30   5.1  
sp|A8GA75|GLO2_SERP5 Hydroxyacylglutathione hydrolase OS=Serrati...    30   6.7  

>sp|A2BQ40|GLO2_PROMS Hydroxyacylglutathione hydrolase
           OS=Prochlorococcus marinus (strain AS9601) GN=gloB PE=3
           SV=2
          Length = 246

 Score = 32.0 bits (71), Expect = 1.8
 Identities = 26/83 (31%), Positives = 40/83 (48%)
 Frame = +3

Query: 87  LGVTSNRISLFFLGGKKVLPVALRQVFDAPKLFSGINYVGCGRLDEGRRL*YKSSLKEVA 266
           LG TS+ I+ F  G   VL       F    LFSG    GCGR+ EG      SSL+ + 
Sbjct: 115 LGHTSSHIAFFLNGENPVL-------FIGDTLFSG----GCGRIFEGTYQQMYSSLERIK 163

Query: 267 QLATHVGVLSCCLGWSETHFVYA 335
            L  +  ++ C   +++ + ++A
Sbjct: 164 SLPKNT-LIYCAHEYTKANILWA 185


>sp|A3PBT3|GLO2_PROM0 Hydroxyacylglutathione hydrolase
           OS=Prochlorococcus marinus (strain MIT 9301) GN=gloB
           PE=3 SV=2
          Length = 246

 Score = 31.6 bits (70), Expect = 2.3
 Identities = 26/83 (31%), Positives = 40/83 (48%)
 Frame = +3

Query: 87  LGVTSNRISLFFLGGKKVLPVALRQVFDAPKLFSGINYVGCGRLDEGRRL*YKSSLKEVA 266
           LG TS+ I+ F  G   VL       F    LFSG    GCGR+ EG      SSL+ + 
Sbjct: 115 LGHTSSHIAFFLNGENPVL-------FIGDTLFSG----GCGRIFEGTYQQMYSSLERIK 163

Query: 267 QLATHVGVLSCCLGWSETHFVYA 335
            L     ++ C   +++++ ++A
Sbjct: 164 SLPKDT-LIYCAHEYTKSNILWA 185


>sp|Q4K6J3|MURG_PSEF5
           UDP-N-acetylglucosamine--N-acetylmuramyl-(pentapeptide)
           pyrophosphoryl-undecaprenol N-acetylglucosamine
           transferase OS=Pseudomonas fluorescens (strain Pf-5 /
           ATCC BAA-477) GN=murG PE=3 SV=1
          Length = 356

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 30/108 (27%), Positives = 48/108 (44%), Gaps = 7/108 (6%)
 Frame = +3

Query: 93  VTSNRISLFFLGGK-------KVLPVALRQVFDAPKLFSGINYVGCGRLDEGRRL*YKSS 251
           +   +  L  LGG        K+LP AL QV  AP+L   + +      DE     Y+++
Sbjct: 175 LAGRKARLLILGGSLGAEPLNKLLPEALAQV--APELRPEVFHQAGKNHDEVTAERYRAA 232

Query: 252 LKEVAQLATHVGVLSCCLGWSETHFVYAGAAYVVRASARFMPSSCTPI 395
             E AQ+   +  ++   GW++     AGA  V   +A  +PS   P+
Sbjct: 233 GVE-AQVQPFIKDMAQAYGWADLVVCRAGALTVSELAAAGLPSMLVPL 279


>sp|Q1LT01|GLO2_BAUCH Hydroxyacylglutathione hydrolase OS=Baumannia
           cicadellinicola subsp. Homalodisca coagulata GN=gloB
           PE=3 SV=1
          Length = 257

 Score = 31.2 bits (69), Expect = 3.0
 Identities = 19/61 (31%), Positives = 32/61 (52%), Gaps = 2/61 (3%)
 Frame = +3

Query: 165 FDAPKLFSG--INYVGCGRLDEGRRL*YKSSLKEVAQLATHVGVLSCCLGWSETHFVYAG 338
           +  P LF G  +   GCGR+ EG       S +EV QL++H  ++ C   ++ T+  +A 
Sbjct: 117 YSYPWLFCGDTVFSAGCGRIFEGTTKQMYESFQEVNQLSSHT-LICCAHEYTLTNLAFAS 175

Query: 339 A 341
           +
Sbjct: 176 S 176


>sp|Q31BX5|GLO2_PROM9 Hydroxyacylglutathione hydrolase
           OS=Prochlorococcus marinus (strain MIT 9312) GN=gloB
           PE=3 SV=1
          Length = 246

 Score = 30.4 bits (67), Expect = 5.1
 Identities = 25/83 (30%), Positives = 40/83 (48%)
 Frame = +3

Query: 87  LGVTSNRISLFFLGGKKVLPVALRQVFDAPKLFSGINYVGCGRLDEGRRL*YKSSLKEVA 266
           LG T++ I+ F  G   VL       F    LFSG    GCGR+ EG      SSL+ + 
Sbjct: 115 LGHTNSHIAFFVNGESPVL-------FIGDTLFSG----GCGRIFEGTYQQMYSSLERIK 163

Query: 267 QLATHVGVLSCCLGWSETHFVYA 335
            L  +  ++ C   +++ + ++A
Sbjct: 164 SLPKNT-LIYCAHEYTKANLLWA 185


>sp|A8GA75|GLO2_SERP5 Hydroxyacylglutathione hydrolase OS=Serratia
           proteamaculans (strain 568) GN=gloB PE=3 SV=1
          Length = 251

 Score = 30.0 bits (66), Expect = 6.7
 Identities = 20/48 (41%), Positives = 26/48 (54%), Gaps = 2/48 (4%)
 Frame = +3

Query: 165 FDAPKLFSG--INYVGCGRLDEGRRL*YKSSLKEVAQLATHVGVLSCC 302
           + AP LF G  I   GCGRL EG      +S +++AQL  +   L CC
Sbjct: 118 YSAPYLFCGDTIFSAGCGRLFEGTAEQMFNSFQQLAQLPDN--TLICC 163
tr_hit_id B7G4U5
Definition tr|B7G4U5|B7G4U5_PHATR G protein beta subunit OS=Phaeodactylum tricornutum CCAP 1055/1
Align length 79
Score (bit) 37.7
E-value 0.34
Report 
BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944259|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_H14, 5'
         (517 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B7G4U5|B7G4U5_PHATR G protein beta subunit OS=Phaeodactylum t...    38   0.34 
tr|Q7NS75|Q7NS75_CHRVO Dihydroorotate oxidase OS=Chromobacterium...    33   6.4  
tr|Q4SHL7|Q4SHL7_TETNG Chromosome 5 SCAF14581, whole genome shot...    33   8.5  

>tr|B7G4U5|B7G4U5_PHATR G protein beta subunit OS=Phaeodactylum
           tricornutum CCAP 1055/1 GN=PHATRDRAFT_21897 PE=4 SV=1
          Length = 351

 Score = 37.7 bits (86), Expect = 0.34
 Identities = 23/79 (29%), Positives = 38/79 (48%)
 Frame = +3

Query: 93  VTSNRISLFFLGGKKVLPVALRQVFDAPKLFSGINYVGCGRLDEGRRL*YKSSLKEVAQL 272
           +TSN++    L    V+ V + Q           N V CG LD    +  ++++ + A++
Sbjct: 88  ITSNKLQSIGLKSSYVMAVGIEQTRG--------NLVACGGLDNLCTIFPRNNVGKAAEM 139

Query: 273 ATHVGVLSCCLGWSETHFV 329
           A+H G LSCC   SE   +
Sbjct: 140 ASHDGFLSCCRFLSEQEII 158


>tr|Q7NS75|Q7NS75_CHRVO Dihydroorotate oxidase OS=Chromobacterium
           violaceum GN=pydA PE=4 SV=1
          Length = 316

 Score = 33.5 bits (75), Expect = 6.4
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +3

Query: 123 LGGKKVLPVALRQVFDAPKLFSGINYVGCGRLDEGR 230
           LGG  VLP AL  V +  +L  G + VGCG +  GR
Sbjct: 225 LGGDYVLPTALANVREFYRLLPGKDVVGCGGVKSGR 260


>tr|Q4SHL7|Q4SHL7_TETNG Chromosome 5 SCAF14581, whole genome shotgun
           sequence. (Fragment) OS=Tetraodon nigroviridis
           GN=GSTENG00018094001 PE=4 SV=1
          Length = 441

 Score = 33.1 bits (74), Expect = 8.5
 Identities = 14/41 (34%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
 Frame = +1

Query: 367 DSCHHHVHQ-SCPEGL*PVNYVIITLEHYSTRCCIIQMNIP 486
           +SC H++H    PE L P  +  + +   STR C+ Q+ +P
Sbjct: 315 ESCVHYIHNVRAPEQLHPCGWTCLLVRVCSTRSCVCQVKVP 355