BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944280|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_I19, 5'
         (645 letters)

Database: uniprot_sprot.fasta 
           412,525 sequences; 148,809,765 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|Q58734|HMDY_METJA H(2)-forming methylenetetrahydromethanopter...    34   0.57 
sp|Q5T1N1|CA062_HUMAN Uncharacterized protein C1orf62 OS=Homo sa...    32   2.2  
sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH...    32   2.8  
sp|Q49537|VLPE_MYCHR Variant surface antigen E OS=Mycoplasma hyo...    31   6.3  
sp|O14529|CUX2_HUMAN Homeobox protein cut-like 2 OS=Homo sapiens...    30   8.2  
sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subuni...    30   8.3  

>sp|Q58734|HMDY_METJA H(2)-forming methylenetetrahydromethanopterin
           dehydrogenase-related protein MJ1338
           OS=Methanocaldococcus jannaschii GN=MJ1338 PE=3 SV=1
          Length = 353

 Score = 34.3 bits (77), Expect = 0.57
 Identities = 17/46 (36%), Positives = 26/46 (56%)
 Frame = -3

Query: 505 MGLSSRENAVMP*TYDSNHYNMGGKKSINKNLVSPVPLKETLTLAK 368
           +G+SS   A +P T    HY +GGK +  K L +   +K+ + LAK
Sbjct: 149 VGISSMHPAAVPGTPQHGHYVIGGKTTDGKELATEEQIKKAVELAK 194


>sp|Q5T1N1|CA062_HUMAN Uncharacterized protein C1orf62 OS=Homo
           sapiens GN=C1orf62 PE=2 SV=2
          Length = 836

 Score = 32.3 bits (72), Expect = 2.2
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = -2

Query: 644 GKQSPTSQKFCQNKRPTKGTYILAKSAPERFSEIGKRTTFLQEHSND 504
           G + PTS++ C+ K PTK  +    +  + +S   KR  F+Q HS D
Sbjct: 670 GTKIPTSRRACR-KEPTKEFHYRYNTPGQNYSNHSKRGAFVQPHSLD 715


>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10
           OS=Homo sapiens GN=MARCH10 PE=2 SV=2
          Length = 808

 Score = 32.0 bits (71), Expect = 2.8
 Identities = 19/73 (26%), Positives = 31/73 (42%)
 Frame = -3

Query: 622 KNFAKTKGQPRGLTSSPSQPQKGSQRSENGQHSYKSTPMMGLSSRENAVMP*TYDSNHYN 443
           KNF +     RG +S  S+P  GS R  N        P  G    ++  +P    +   +
Sbjct: 330 KNFEENAENCRGHSSRRSEPSHGSLRISNAMEPATERPSAGQRLSQDPGLPDRESATEKD 389

Query: 442 MGGKKSINKNLVS 404
            GG ++  K+ +S
Sbjct: 390 RGGSENAKKSPLS 402


>sp|Q49537|VLPE_MYCHR Variant surface antigen E OS=Mycoplasma
           hyorhinis GN=vlpE PE=4 SV=1
          Length = 243

 Score = 30.8 bits (68), Expect = 6.3
 Identities = 20/69 (28%), Positives = 25/69 (36%), Gaps = 4/69 (5%)
 Frame = -3

Query: 637 KAQLPKNFAKTKGQPRG----LTSSPSQPQKGSQRSENGQHSYKSTPMMGLSSRENAVMP 470
           K   P N   + GQ        TS P +    +  + +GQHS  S P        N   P
Sbjct: 122 KESNPSNPTTSDGQHSNPSNPTTSDPKESNPSNPTTSDGQHSNPSNPTTSDGQHSNPSNP 181

Query: 469 *TYDSNHYN 443
            T D  H N
Sbjct: 182 TTSDGQHSN 190


>sp|O14529|CUX2_HUMAN Homeobox protein cut-like 2 OS=Homo sapiens
           GN=CUX2 PE=1 SV=3
          Length = 1424

 Score = 30.4 bits (67), Expect = 8.2
 Identities = 15/52 (28%), Positives = 23/52 (44%)
 Frame = -3

Query: 625 PKNFAKTKGQPRGLTSSPSQPQKGSQRSENGQHSYKSTPMMGLSSRENAVMP 470
           P+      G    L+ SP QP  G     +G  ++  +P   L+S E  +MP
Sbjct: 380 PQQLPPPPGPEDPLSPSPGQPLLGPSLGPDGTRTFSLSPFPSLASGERLMMP 431


>sp|O84834|RIR1_CHLTR Ribonucleoside-diphosphate reductase subunit
           alpha OS=Chlamydia trachomatis GN=nrdA PE=3 SV=2
          Length = 1047

 Score = 30.4 bits (67), Expect = 8.3
 Identities = 11/28 (39%), Positives = 19/28 (67%)
 Frame = -1

Query: 252 GPKYQQSKKINVPAWIPSLFSTKLYQKG 169
           G + +++  +N+ +WIP LF  +L QKG
Sbjct: 557 GDERRRAHDVNIASWIPDLFFKRLQQKG 584

BLASTX 2.2.19 [Nov-02-2008]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= DK944280|Adiantum capillus-veneris mRNA, clone:
YMU02A01NGRL0005_I19, 5'
         (645 letters)

Database: uniprot_trembl.fasta 
           7,341,751 sequences; 2,391,615,440 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

tr|B4DET8|B4DET8_HUMAN cDNA FLJ57956 OS=Homo sapiens PE=2 SV=1         33   4.2  

>tr|B4DET8|B4DET8_HUMAN cDNA FLJ57956 OS=Homo sapiens PE=2 SV=1
          Length = 443

 Score = 33.1 bits (74), Expect(2) = 4.2
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = -2

Query: 644 GKQSPTSQKFCQNKRPTKGTYILAKSAPERFSEIGKRTTFLQEHSNDGAIIPGKCSH 474
           G + PTS++ C+ K PTK  +    +  + +S   KR  F+Q HS D +     C +
Sbjct: 377 GTKIPTSRRACR-KEPTKEFHYRYNTPGQNYSNHSKRGAFVQPHSLDESKNSSPCKY 432



 Score = 20.4 bits (41), Expect(2) = 4.2
 Identities = 8/15 (53%), Positives = 10/15 (66%)
 Frame = -1

Query: 492 PGKMQSCLKPTIQTT 448
           P K  SC+ P+I TT
Sbjct: 429 PCKYISCMTPSISTT 443